##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140083_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15879618 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.08483453443276 33.0 31.0 34.0 30.0 34.0 2 32.29684612060567 33.0 31.0 34.0 30.0 34.0 3 32.38280517831097 34.0 31.0 34.0 30.0 34.0 4 35.97435379113024 37.0 35.0 37.0 35.0 37.0 5 35.70614897663155 37.0 35.0 37.0 33.0 37.0 6 35.7598578882691 37.0 35.0 37.0 33.0 37.0 7 35.74645718807594 37.0 35.0 37.0 33.0 37.0 8 35.73422748582491 37.0 35.0 37.0 33.0 37.0 9 37.55441900428587 39.0 37.0 39.0 35.0 39.0 10-11 37.36768242787704 39.0 37.0 39.0 34.5 39.0 12-13 37.374945795295574 39.0 37.0 39.0 34.5 39.0 14-15 38.5956964455946 40.0 38.0 41.0 34.5 41.0 16-17 38.53899719124226 40.0 38.0 41.0 34.0 41.0 18-19 38.5862207138736 40.0 38.0 41.0 34.0 41.0 20-21 38.603602103136495 40.0 38.0 41.0 34.0 41.0 22-23 38.53724749293818 40.0 38.0 41.0 34.0 41.0 24-25 38.54866228745473 40.0 38.0 41.0 34.0 41.0 26-27 38.422073633084324 40.0 38.0 41.0 34.0 41.0 28-29 38.327440790792856 40.0 38.0 41.0 34.0 41.0 30-31 38.20605821879025 40.0 38.0 41.0 34.0 41.0 32-33 38.113065666058205 40.0 38.0 41.0 34.0 41.0 34-35 38.05506378223221 40.0 37.5 41.0 34.0 41.0 36-37 38.0302854891234 40.0 37.0 41.0 33.5 41.0 38-39 37.94500826125455 40.0 37.0 41.0 33.0 41.0 40-41 37.9162468714094 40.0 37.0 41.0 33.0 41.0 42-43 37.86439372488135 40.0 37.0 41.0 33.0 41.0 44-45 37.76886769257608 40.0 37.0 41.0 33.0 41.0 46-47 37.69092993881105 40.0 37.0 41.0 33.0 41.0 48-49 37.70232827959443 40.0 37.0 41.0 33.0 41.0 50-51 37.63554195768796 39.0 37.0 41.0 33.0 41.0 52-53 37.44845073096195 39.0 36.0 40.0 32.0 41.0 54-55 37.28141677444163 39.0 36.0 40.0 31.5 41.0 56-57 37.155118077768144 39.0 36.0 40.0 31.0 41.0 58-59 36.99639803190932 39.0 35.5 40.0 31.0 41.0 60-61 36.81543448576692 38.5 35.0 40.0 31.0 41.0 62-63 36.67248972541343 38.0 35.0 40.0 31.0 41.0 64-65 36.47756527530976 38.0 35.0 40.0 31.0 41.0 66-67 36.20626380415198 37.5 34.5 40.0 30.5 41.0 68-69 35.974725365139705 37.0 34.0 40.0 30.0 41.0 70-71 35.702203479310484 36.5 34.0 39.0 30.0 41.0 72-73 35.40758221152147 36.0 34.0 39.0 30.0 40.0 74-75 34.9818965613122 36.0 34.0 38.5 29.5 40.0 76-77 33.01997674922671 34.0 31.0 36.5 27.0 39.0 78-79 34.169115438141645 35.0 33.0 37.0 29.0 39.0 80-81 34.18143543463858 35.0 33.0 37.0 29.0 39.0 82-83 33.93619469070535 35.0 33.0 36.0 29.0 38.5 84-85 33.664530285464 35.0 33.0 36.0 29.0 37.0 86-87 33.427213936262305 35.0 33.0 35.5 29.0 37.0 88-89 33.279516121766264 35.0 33.0 35.0 29.0 36.5 90-91 33.19132439434813 35.0 33.0 35.0 29.0 36.0 92-93 33.07036722713536 34.5 33.0 35.0 29.0 36.0 94-95 32.980538745020475 34.0 33.0 35.0 29.0 36.0 96-97 32.99439456575951 34.0 32.5 35.0 29.0 35.0 98-99 33.16776658569704 34.0 33.0 35.0 29.0 35.0 100-101 31.955659639879144 33.0 31.0 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 12.0 19 32.0 20 135.0 21 524.0 22 2214.0 23 6902.0 24 17332.0 25 36028.0 26 65230.0 27 104060.0 28 153567.0 29 213684.0 30 285036.0 31 373561.0 32 494007.0 33 674838.0 34 979075.0 35 1479291.0 36 2455808.0 37 3768189.0 38 3582001.0 39 1174925.0 40 13165.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.635774865617044 20.957821529459967 14.198389407100349 23.208014197822642 2 14.665439818791604 21.716977001829314 41.99357699669051 21.624006182688575 3 18.684104200000807 26.799111515039154 30.270883124629716 24.245901160330323 4 12.330756584136509 18.394693206093944 39.425660734242854 29.848889475526697 5 12.78259968218379 38.56631815702368 35.66246996621707 12.988612194575461 6 29.124756023728025 38.62678560655552 19.210972203487515 13.037486166228938 7 26.19429128200426 32.958912777723334 23.451801251592325 17.394994688680075 8 24.03143026615937 37.56201324338827 21.35800367657084 17.04855281388152 9 25.662642135084912 16.748627107513713 21.555218099787325 36.033512657614054 10-11 23.964563713622862 27.354444761308038 29.0181392180665 19.6628523070026 12-13 24.77067429540723 24.879398710219238 29.34391349201661 21.006013502356925 14-15 21.77399000076576 26.234922809216542 27.18367371100158 24.807413479016116 16-17 21.14493872187691 29.394238482336355 27.867931025318953 21.59289177046778 18-19 21.119531968590177 28.59232507986023 29.663040382961352 20.625102568588236 20-21 22.173763391643575 27.64621925134481 29.495848433443268 20.684168923568343 22-23 21.80031591771678 27.625721967845273 29.316771093938314 21.257191020499633 24-25 21.41656175990729 27.763199942544748 29.503353840091386 21.316884457456574 26-27 21.4106839217446 27.93125615269912 29.348106953920773 21.309952971635507 28-29 21.280684004048588 28.103251600123553 29.384961529533015 21.231102866294844 30-31 21.60199498141749 27.920644252107856 29.31790852132023 21.15945224515442 32-33 21.386410669621515 28.034875816056733 29.227294000214854 21.351419514106894 34-35 21.464180347804223 28.121672572513884 29.289570544471495 21.1245765352104 36-37 21.43400491263161 28.078700621253866 29.221528395405016 21.265766070709507 38-39 21.319450475696637 28.16123836839111 29.283142280394042 21.23616887551821 40-41 21.55890008237629 28.01857841616957 29.128202177612806 21.294319323841336 42-43 21.452731841463745 28.12653848745221 28.954450901603202 21.466278769480844 44-45 21.57574073846491 28.290262457399812 28.71777254047852 21.416224263656762 46-47 21.570494928896718 28.25873208938146 28.468952928400647 21.70182005332117 48-49 21.60713687564352 28.316859329356316 28.437537342247644 21.638466452752525 50-51 21.637462189557986 28.43787944956333 28.280129912905554 21.644528447973133 52-53 21.681831042032712 28.400756849408076 28.147166232195598 21.770245876363617 54-55 21.66923542488713 28.33158667949473 28.188724363177826 21.810453532440306 56-57 21.7461261319385 28.3510894339424 28.123443436253183 21.77934099786592 58-59 21.680093687736722 28.3909905414577 28.197338694493784 21.731577076311794 60-61 21.792665325242062 28.343752099812747 28.154518181951143 21.709064392994044 62-63 21.68368108549537 28.344124677963862 28.13134715436041 21.84084708218036 64-65 21.598416283849183 28.37536243969901 28.153399343666308 21.872821932785502 66-67 21.743968216631007 28.431316082121516 27.958805280425874 21.865910420821596 68-69 21.708870186616476 28.450797936739242 27.979671048476185 21.860660828168093 70-71 21.66411889834609 28.242110300517997 28.059317833327928 22.034452967807987 72-73 21.695702594700688 28.248453452513118 28.098330763791797 21.957513188994398 74-75 21.67877936207282 28.279007768907192 28.018703488391054 22.023509380628933 76-77 21.73911949645978 28.262331027694398 27.895981301210576 22.102568174635245 78-79 21.8021103250858 28.23701975382248 27.882460392987173 22.078409528104544 80-81 21.736637961791335 28.257897338554045 27.908305891446687 22.097158808207933 82-83 21.84987244836351 28.179120467180947 28.020938591097394 21.950068493358156 84-85 21.957331679299863 28.174177425961865 27.901648633629815 21.96684226110846 86-87 21.764121891383308 28.24503253154952 27.95496924421076 22.035876332856414 88-89 21.89115793304905 28.122708658887817 27.98952358901233 21.9966098190508 90-91 21.859473476096543 28.04524733213268 28.091778171780202 22.003501019990583 92-93 21.845695169320585 27.973457218055504 28.136053261132925 22.04479435149098 94-95 21.696407382436377 28.08099423516272 28.190183392831013 22.03241498956989 96-97 21.65890684902631 28.13433403158298 28.238872875980274 21.967886243410437 98-99 21.877956615505585 28.702014918815394 28.307970303121877 21.112058162557144 100-101 25.76670858050541 35.802505264403315 28.932556479841708 9.498229675249563 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2540.0 1 2480.0 2 4019.0 3 6111.5 4 8916.5 5 14999.5 6 19817.5 7 23201.5 8 25556.5 9 25012.0 10 22425.0 11 19987.0 12 22027.0 13 30086.5 14 48124.0 15 71727.0 16 89834.5 17 99242.5 18 99885.5 19 93790.0 20 85670.5 21 78750.0 22 76516.5 23 84043.0 24 101878.0 25 127592.5 26 160824.5 27 197633.0 28 235898.0 29 276684.5 30 313786.5 31 348315.5 32 385262.5 33 422640.0 34 459482.0 35 494552.0 36 528178.5 37 557884.5 38 579804.5 39 596620.5 40 616283.5 41 635564.5 42 649316.0 43 661253.5 44 672469.5 45 681109.0 46 684730.0 47 684059.0 48 677425.5 49 663368.0 50 644800.0 51 621202.5 52 586957.0 53 547124.5 54 504222.0 55 457959.0 56 410610.0 57 360094.5 58 312111.0 59 268617.5 60 223645.0 61 178399.5 62 139730.5 63 108289.0 64 80769.5 65 58192.0 66 42068.5 67 31101.5 68 22935.0 69 16055.5 70 11008.5 71 7689.0 72 5286.0 73 3586.0 74 2488.5 75 1772.5 76 1243.5 77 845.5 78 598.0 79 412.0 80 282.5 81 188.5 82 134.5 83 93.0 84 66.0 85 50.0 86 39.5 87 31.5 88 21.0 89 13.5 90 10.5 91 8.0 92 6.0 93 2.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0027834422717221536 3 1.2594761410507483E-5 4 3.085716545574333E-4 5 0.0 6 0.0 7 0.0020529461099127195 8 9.257149636722998E-4 9 3.778428423152245E-5 10-11 1.2279892375244796E-4 12-13 1.2594761410507482E-4 14-15 1.2594761410507483E-5 16-17 3.274637966731945E-4 18-19 0.0 20-21 5.667900873074004E-5 22-23 0.0 24-25 6.299917593927913E-6 26-27 6.050248829087781E-4 28-29 1.828628215134326E-4 30-31 3.157094729037767E-5 32-33 0.0016743565208922504 34-35 5.017264311230432E-4 36-37 0.001256950232937762 38-39 0.003507282106887313 40-41 1.0031671929896606E-4 42-43 8.026294663352569E-4 44-45 0.0016440651094591532 46-47 8.997602438870122E-5 48-49 2.089308080473138E-4 50-51 2.2475759382693052E-4 52-53 0.0 54-55 1.5262674089876337E-4 56-57 0.0014955747798597984 58-59 0.0028376980041818893 60-61 0.0010835318676019896 62-63 9.180552553603223E-4 64-65 7.305502413098766E-6 66-67 6.649977931309348E-5 68-69 2.2437635993109402E-5 70-71 1.1361565890397775E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 2.046654638613799E-5 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 435.0 20-21 1629.0 22-23 2886.0 24-25 5843.0 26-27 7493.0 28-29 14974.0 30-31 38491.0 32-33 47704.0 34-35 64861.0 36-37 97695.0 38-39 116776.0 40-41 123207.0 42-43 140893.0 44-45 169084.0 46-47 169868.0 48-49 158749.0 50-51 143017.0 52-53 127665.0 54-55 137468.0 56-57 143276.0 58-59 146831.0 60-61 151925.0 62-63 143525.0 64-65 151775.0 66-67 161690.0 68-69 167432.0 70-71 167043.0 72-73 159227.0 74-75 160794.0 76-77 156139.0 78-79 169003.0 80-81 174956.0 82-83 166688.0 84-85 165562.0 86-87 174618.0 88-89 189209.0 90-91 208550.0 92-93 216050.0 94-95 240392.0 96-97 348274.0 98-99 1342794.0 100-101 9205127.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.28427112019344 #Duplication Level Percentage of deduplicated Percentage of total 1 89.35226684960271 75.30990684355787 2 7.232347724480717 12.191463128912938 3 1.860310693178928 4.703847924950633 4 0.7278654649787807 2.4539044075718888 5 0.33781619709144756 1.4236295972224133 6 0.17174962624553178 0.8685475237962176 7 0.10171535321598708 0.6001103085279748 8 0.05657802462255308 0.38149100533857955 9 0.039208384803356 0.2974185121455837 >10 0.11688620917294046 1.4564059675348429 >50 0.0024900936692009083 0.14559820422666517 >100 6.927911582421096E-4 0.10389638980500043 >500 4.840273127764694E-5 0.03054376453964781 >1k 2.4185048343144053E-5 0.033236421869746 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 6.297380705253741E-6 0.0 2 0.0 6.297380705253741E-6 0.0 6.297380705253741E-6 0.0 3 0.0 6.297380705253741E-6 0.0 6.297380705253741E-6 0.0 4 0.0 1.8892142115761225E-5 0.0 1.2594761410507483E-5 0.0 5 0.0 1.8892142115761225E-5 0.0 1.8892142115761225E-5 0.0 6 0.0 1.8892142115761225E-5 0.0 1.8892142115761225E-5 0.0 7 0.0 1.8892142115761225E-5 0.0 4.4081664936776186E-5 0.0 8 0.0 1.8892142115761225E-5 0.0 5.667642634728367E-5 0.0 9 0.0 4.4081664936776186E-5 0.0 1.0075809128405986E-4 0.0 10-11 0.0 4.4081664936776186E-5 0.0 1.3224499481032857E-4 0.0 12-13 0.0 4.4081664936776186E-5 0.0 1.511371369260898E-4 0.0 14-15 0.0 5.35277359946568E-5 0.0 1.8577273080498536E-4 0.0 16-17 0.0 5.667642634728367E-5 0.0 1.9836749221549283E-4 0.0 18-19 0.0 6.612249740516429E-5 0.0 2.3615177644701528E-4 0.0 20-21 0.0 7.55685684630449E-5 0.0 3.4635593878895577E-4 0.0 22-23 0.0 8.186594916829864E-5 0.0 6.958605679305384E-4 0.0 24-25 0.0 8.816332987355237E-5 0.0 0.0015617504149029278 0.0 26-27 0.0 8.816332987355237E-5 0.0 0.0037847258038574984 0.0 28-29 0.0 8.816332987355237E-5 0.0 0.020762464185221582 0.0 30-31 0.0 9.760940093143298E-5 0.0 0.03059897284682793 0.0 32-33 0.0 1.0075809128405986E-4 0.0 0.03549833503551533 0.0 34-35 0.0 1.1965023339982107E-4 0.0 0.041852392167116365 0.0 36-37 0.0 1.385423755155823E-4 0.0 0.051433856910159934 0.0 38-39 0.0 1.511371369260898E-4 0.0 0.06987573630549551 0.0 40-41 0.0 1.826240404523585E-4 0.0 0.11061034339742934 0.0 42-43 0.0 1.920701115102391E-4 0.0 0.12722598238824134 0.0 44-45 0.0 2.2985439574176156E-4 0.0 0.14987136340433377 0.0 46-47 0.0 2.550439185627765E-4 0.0 0.1753348222860273 0.0 48-49 0.0 2.5819260891540337E-4 0.0 0.19802743365740916 0.0 50-51 0.0 2.896795124416721E-4 0.0 0.22112622608427984 0.0 52-53 0.0 2.959768931469258E-4 0.0 0.2517409423828709 0.0 54-55 0.0 3.0542296420480646E-4 0.0 0.3132317162793211 0.0 56-57 0.0 3.085716545574333E-4 0.0 0.3776759617265352 0.0 58-59 0.0 3.085716545574333E-4 0.0 0.44721478816429966 0.0 60-61 0.0 3.117203449100602E-4 0.0 0.49239534603414264 0.0 62-63 0.0 3.2116641596794076E-4 0.0 0.5129027663008014 0.0 64-65 0.0 3.526533194942095E-4 0.0 0.5317634215130365 0.0 66-67 0.0 3.526533194942095E-4 0.0 0.540450658195934 0.0 68-69 0.0 3.589507001994632E-4 0.0 0.5482971945546801 0.0 70-71 0.0 3.7469415196259763E-4 0.0 0.5553723017770327 0.0 72-73 0.0 3.841402230204782E-4 0.0 0.560728224066851 0.0 74-75 0.0 3.841402230204782E-4 0.0 0.5647648450989187 0.0 76-77 0.0 3.9043760372573194E-4 0.0 0.5684330693597289 0.0 78-79 0.0 3.9673498443098566E-4 0.0 0.5717612350624555 0.0 80-81 0.0 3.9673498443098566E-4 0.0 0.5734237435686426 0.0 82-83 0.0 3.9673498443098566E-4 0.0 0.5741164554462204 0.0 84-85 0.0 3.9673498443098566E-4 0.0 0.5746958144711038 0.0 86-87 0.0 4.061810554888663E-4 0.0 0.5749508583896665 0.0 88-89 0.0 4.156271265467469E-4 0.0 0.5750453191002454 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 21620 0.0 49.1153 1 GTATCAA 38810 0.0 35.94881 1 ATCAACG 47080 0.0 28.904354 3 TCAACGC 47885 0.0 28.409697 4 CAACGCA 48290 0.0 28.136656 5 TATCAAC 49720 0.0 27.707077 2 AACGCAG 50165 0.0 27.251936 6 ACGCAGA 58160 0.0 23.42654 7 CGCAGAG 58825 0.0 23.1612 8 TACATGG 62655 0.0 22.033787 2 GTACATG 64510 0.0 21.847929 1 TGGTATC 9780 0.0 21.107365 2 ACATGGG 64025 0.0 21.05173 3 GTGGTAT 10670 0.0 20.99484 1 GCAGAGT 69035 0.0 19.614326 9 CATGGGG 40325 0.0 19.240547 4 GAGTACT 36245 0.0 18.338806 12-13 CAGAGTA 68315 0.0 17.531939 10-11 AGAGTAC 64070 0.0 17.51722 10-11 GTACTTT 41115 0.0 16.197718 14-15 >>END_MODULE