##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140081_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 71310482 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.101496214820145 31.0 31.0 34.0 28.0 34.0 2 31.167434641656186 31.0 31.0 34.0 28.0 34.0 3 31.177969362204003 31.0 31.0 34.0 27.0 34.0 4 34.855788620248 37.0 35.0 37.0 32.0 37.0 5 34.56930201369274 37.0 35.0 37.0 30.0 37.0 6 34.6336199214023 37.0 35.0 37.0 30.0 37.0 7 34.48144347138195 37.0 35.0 37.0 30.0 37.0 8 34.4667927500476 37.0 35.0 37.0 30.0 37.0 9 35.87816008591837 38.0 35.0 39.0 30.0 39.0 10-11 35.818244791838595 38.0 35.0 39.0 30.0 39.0 12-13 35.77499973986994 38.0 35.0 39.0 30.0 39.0 14-15 36.81317618214949 39.0 36.0 41.0 30.0 41.0 16-17 36.85777633644378 39.0 36.0 41.0 30.0 41.0 18-19 36.93620635603052 39.0 36.0 41.0 30.0 41.0 20-21 37.007538405056266 39.0 36.0 41.0 30.0 41.0 22-23 36.990663473849516 39.0 36.0 41.0 30.0 41.0 24-25 36.96934984957698 39.0 36.0 41.0 30.0 41.0 26-27 36.8765615262747 39.0 36.0 41.0 30.0 41.0 28-29 36.83399506958245 39.0 36.0 41.0 30.0 41.0 30-31 36.73203259235143 39.0 35.0 41.0 30.0 41.0 32-33 36.623338515639105 39.0 35.0 41.0 30.0 41.0 34-35 36.57209807401519 39.0 35.0 41.0 30.0 41.0 36-37 36.561783697219 39.0 35.0 41.0 30.0 41.0 38-39 36.51784577784453 39.0 35.0 41.0 30.0 41.0 40-41 36.505394515343454 39.0 35.0 41.0 30.0 41.0 42-43 36.477935410809486 39.0 35.0 41.0 30.0 41.0 44-45 36.45755242375027 39.0 35.0 41.0 29.5 41.0 46-47 36.432377764406425 39.0 35.0 40.5 29.0 41.0 48-49 36.38251099562596 39.0 35.0 40.0 29.0 41.0 50-51 36.33953812189258 39.0 35.0 40.0 29.0 41.0 52-53 36.28160691094534 38.5 34.5 40.0 29.0 41.0 54-55 36.203407371141026 38.0 34.0 40.0 28.5 41.0 56-57 36.12074896282412 38.0 34.0 40.0 28.0 41.0 58-59 35.99634041262284 38.0 34.0 40.0 28.0 41.0 60-61 35.847077363043965 38.0 34.0 40.0 28.0 41.0 62-63 35.697333613819836 38.0 34.0 40.0 28.0 41.0 64-65 35.526682170737175 37.0 34.0 40.0 28.0 41.0 66-67 35.32531177404081 37.0 33.0 40.0 28.0 41.0 68-69 35.098336131165496 36.5 33.0 39.5 28.0 41.0 70-71 34.88156186433341 36.0 33.0 39.0 28.0 41.0 72-73 34.60707863793604 36.0 33.0 39.0 28.0 40.0 74-75 34.33812832359036 35.0 32.0 38.5 28.0 40.0 76-77 34.05879882892586 35.0 32.0 37.5 27.5 39.5 78-79 33.78298897322894 35.0 32.0 37.0 27.0 39.0 80-81 33.527742040142144 35.0 32.0 36.5 27.0 39.0 82-83 33.403647120946786 35.0 32.0 36.0 27.5 38.5 84-85 33.362401429640045 35.0 32.0 36.0 28.0 37.0 86-87 33.194161317774295 35.0 32.0 36.0 28.0 37.0 88-89 33.04700965340436 35.0 32.0 35.0 28.0 37.0 90-91 32.96337102336052 35.0 32.0 35.0 28.0 36.0 92-93 32.91074924623522 34.0 32.0 35.0 28.0 36.0 94-95 32.88244586365967 34.0 32.0 35.0 28.5 36.0 96-97 32.93432185018954 34.0 32.0 35.0 29.0 35.5 98-99 33.04099701192138 34.0 32.0 35.0 29.0 35.0 100 32.69054477990473 34.0 32.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 9.0 13 34.0 14 86.0 15 176.0 16 364.0 17 1376.0 18 9668.0 19 49773.0 20 157558.0 21 348401.0 22 572356.0 23 773038.0 24 947623.0 25 1110069.0 26 1269609.0 27 1430335.0 28 1612958.0 29 1824688.0 30 2082550.0 31 2431375.0 32 2902597.0 33 3541117.0 34 4458677.0 35 5732919.0 36 7837884.0 37 1.13751E7 38 1.3461447E7 39 7122715.0 40 255978.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.52202286334286 21.80913319306971 14.874187780696813 23.79465616289061 2 14.10055116441367 22.918266069215463 40.816521195299174 22.164661571071697 3 16.513634871306813 28.417234567436463 32.10801437786296 22.961116183393763 4 11.736029425666212 19.951652969318403 40.103498275426126 28.208819329589264 5 11.503804801953388 39.62719313664472 36.63143743217138 12.237564629230512 6 27.085599704457252 40.9484141991386 19.48357856111919 12.48240753528496 7 23.79744658984801 34.532652229486594 24.93633304003458 16.733568140630815 8 23.60007768668909 37.309450346760784 22.031879674431124 17.058592292119005 9 25.26981201262529 16.258275013224104 21.962959609877934 36.50895336427267 10-11 22.820001110030738 27.659784218945187 30.237679125179078 19.282535545844993 12-13 24.157629615053633 25.639432927700557 30.16189077052063 20.04104668672518 14-15 21.33967093857308 26.65977698362308 28.206231534385157 23.794320543418685 16-17 20.220878535176144 29.638209615950466 28.878237041273625 21.262674807599762 18-19 20.186080483388803 28.65637270399311 31.07553609212543 20.082010720492658 20-21 21.383508291671944 27.659885123082745 30.895485463145754 20.061121122099557 22-23 20.97459460848184 27.64577932414912 30.73292726671868 20.64669880065036 24-25 20.592418279619253 27.836313537390478 30.889688595231252 20.681579587759018 26-27 20.591136733738484 28.010675731949696 30.663637704236475 20.734549830075345 28-29 20.524585256935985 28.104306937244832 30.744344488651144 20.62676331716804 30-31 20.9615905866729 27.893166607263836 30.571177758808442 20.57406504725482 32-33 20.748363426555237 28.087871425537703 30.404596407249112 20.759168740657945 34-35 20.848161165251295 28.188732568906822 30.42554357242603 20.537562693415857 36-37 20.84548938934615 28.101702366530024 30.335246791173354 20.717561452950477 38-39 20.772837348759023 28.185048719589506 30.303918602363332 20.738195329288132 40-41 20.992759685927716 28.088446873538842 30.13759328126734 20.781200159266103 42-43 20.90214564011892 28.219117601875983 29.84632989508026 21.032406862924837 44-45 21.016705171727075 28.470549737737677 29.548761102557243 20.963983987978004 46-47 21.106929962847776 28.48147886626922 29.145857216561588 21.265733954321416 48-49 21.166935919803606 28.567575732573474 29.031617631502815 21.23387071612011 50-51 21.16651767470062 28.684275445066497 28.772289647889 21.37691723234388 52-53 21.236386368934312 28.64577363621127 28.740531863548597 21.377308131305824 54-55 21.23579574487437 28.59989899224743 28.834600380015 21.329704882863197 56-57 21.28274578191757 28.62582924571632 28.759297206769062 21.332127765597043 58-59 21.251785361815053 28.68675338228237 28.79629669518285 21.26516456071973 60-61 21.3355235210079 28.69775041210435 28.752088084647504 21.21463798224024 62-63 21.26797496274705 28.70096982203401 28.732640409211086 21.298414806007848 64-65 21.19037572047725 28.63436321010206 28.758185656210557 21.417075413210142 66-67 21.309499014875932 28.727317047906514 28.59300923362919 21.37017470358836 68-69 21.26940915855074 28.65979179208249 28.680739670331484 21.39005937903529 70-71 21.271412036895555 28.4322850799971 28.76546647298493 21.53083641012242 72-73 21.321068159455663 28.53253434406886 28.75186562013761 21.394531876337865 74-75 21.218133210928457 28.66719625181309 28.6739522530142 21.440718284244255 76-77 21.27481171111073 28.640279974609502 28.63935827236493 21.445550041914842 78-79 21.220944004494424 28.649768784127566 28.631283747347307 21.4980034640307 80-81 21.215649636456853 28.656282568045555 28.650117242760775 21.47795055273681 82-83 21.325390763817555 28.583152479455592 28.76320240201689 21.32825435470996 84-85 21.408706434132405 28.65065197208048 28.60550084402793 21.33514074975918 86-87 21.154764457695826 28.740328740626918 28.707972155562 21.396934646115255 88-89 21.30970755087254 28.6243427526043 28.626457519217098 21.439492177306064 90-91 21.298556968950898 28.635087738132725 28.745375716107937 21.32097957680844 92-93 21.30282817416077 28.640354854398097 28.690123352777707 21.366693618663422 94-95 21.068182267449824 28.75663584645702 28.74663657814346 21.428545307949705 96-97 21.070027264364 28.938154240646124 28.819279612044223 21.17253888294566 98-99 22.020230057467284 30.88127353198168 29.059920944070573 18.038575466480463 100 21.21797096503609 31.856697417945 22.793877253339772 24.131454363679133 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 32767.0 1 32480.0 2 40572.0 3 49137.5 4 61532.0 5 102351.5 6 138315.0 7 160344.5 8 169480.0 9 156236.5 10 129987.0 11 103180.0 12 107217.5 13 149896.0 14 261885.0 15 422233.5 16 547001.5 17 607640.5 18 620871.5 19 601382.0 20 560002.5 21 521384.5 22 508377.5 23 543233.5 24 627049.5 25 754100.5 26 921669.0 27 1097211.0 28 1271656.0 29 1465008.0 30 1651822.5 31 1831810.0 32 2027452.5 33 2204720.5 34 2374690.5 35 2535399.0 36 2692265.0 37 2848234.5 38 2932208.5 39 2968757.0 40 3011840.0 41 3033757.5 42 3034155.0 43 3051223.0 44 3062848.5 45 3060983.5 46 3039460.0 47 3001121.5 48 2953123.0 49 2850531.0 50 2721877.5 51 2573556.0 52 2384269.0 53 2183310.5 54 1984599.5 55 1790995.0 56 1610140.0 57 1427811.5 58 1248862.5 59 1089063.5 60 920558.0 61 741411.0 62 580008.5 63 451046.5 64 348136.0 65 265005.0 66 198515.0 67 150641.5 68 116700.0 69 87659.5 70 65406.5 71 49393.0 72 37521.0 73 28370.0 74 20992.5 75 15547.5 76 11430.0 77 8180.5 78 6004.0 79 4507.5 80 3336.5 81 2511.0 82 1988.0 83 1360.0 84 903.5 85 687.0 86 562.5 87 455.5 88 301.5 89 185.0 90 136.0 91 109.5 92 84.5 93 49.5 94 24.5 95 18.0 96 16.5 97 12.0 98 7.0 99 6.0 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.021880373771698807 4 0.014794458968879218 5 0.07657359544982462 6 0.04600445696047883 7 0.00928615234994485 8 0.004968414040449201 9 0.01507071569085734 10-11 0.021257744408458776 12-13 0.0013329036255848052 14-15 0.00745332221986664 16-17 6.654000740031459E-4 18-19 0.008960113325275238 20-21 0.001969757939914549 22-23 0.0014040778682039706 24-25 0.01101557339366299 26-27 6.810094406045196E-4 28-29 0.0012280798013046112 30-31 0.004510918467299803 32-33 0.02376104960670477 34-35 3.9730055358023233E-4 36-37 8.446272997577089E-5 38-39 8.41546620878377E-4 40-41 0.0033709281889366654 42-43 0.013761656779882834 44-45 9.608817086648162E-4 46-47 0.0015524969366398852 48-49 1.128121953877553E-4 50-51 0.0011143091828100613 52-53 4.797481737816706E-4 54-55 3.377239711724247E-4 56-57 8.391565485836502E-5 58-59 0.009394255546936698 60-61 0.0068984980657675905 62-63 6.20791721548813E-4 64-65 0.010569317871505515 66-67 0.001310548368481965 68-69 0.005167043084461453 70-71 0.005159197656318559 72-73 0.023307387276087842 74-75 5.355065566162251E-4 76-77 0.005691797924730499 78-79 9.064875085975533E-5 80-81 6.493717870649426E-5 82-83 9.401151889296849E-7 84-85 0.0 86-87 0.011884187631494816 88-89 1.6831987281593834E-4 90-91 1.550703285689764E-4 92-93 1.8198736572934242E-5 94-95 1.7202791137410436E-4 96-97 4.117127505897574E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 56843.0 20-21 109326.0 22-23 122199.0 24-25 134477.0 26-27 157938.0 28-29 222357.0 30-31 321816.0 32-33 361550.0 34-35 439446.0 36-37 536233.0 38-39 673581.0 40-41 676105.0 42-43 773533.0 44-45 921531.0 46-47 890601.0 48-49 792191.0 50-51 698626.0 52-53 636856.0 54-55 650140.0 56-57 676663.0 58-59 690532.0 60-61 683657.0 62-63 636812.0 64-65 641955.0 66-67 671972.0 68-69 688346.0 70-71 703260.0 72-73 654591.0 74-75 642364.0 76-77 665067.0 78-79 699734.0 80-81 723193.0 82-83 684685.0 84-85 676784.0 86-87 711450.0 88-89 776467.0 90-91 837335.0 92-93 887634.0 94-95 1034261.0 96-97 2291284.0 98-99 4103359.0 100-101 4.1353728E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.73236142678746 #Duplication Level Percentage of deduplicated Percentage of total 1 87.84161255294225 69.1597758783008 2 7.869349586557671 12.391449516851981 3 1.9760712554045767 4.667422688567964 4 0.824067104799671 2.595229965400562 5 0.44070648942821655 1.7348931304396515 6 0.27662053323461677 1.3067392680419112 7 0.186479068678098 1.0277356203586312 8 0.12013766274284667 0.7566977507231442 9 0.08918924395550917 0.6319871811438361 >10 0.36358767431501415 4.671405519047539 >50 0.008923285713013722 0.4717976067331332 >100 0.003152126581770844 0.41183817402658685 >500 5.368661963487025E-5 0.029281257692708163 >1k 3.482691915618826E-5 0.06306792633826805 >5k 1.4902107926241763E-5 0.08067851633340653 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.2437094170812084E-5 0.0 7.0115919283787765E-6 0.0 3 1.4023183856757553E-6 2.383941255648784E-5 0.0 8.413910314054531E-6 0.0 4 1.4023183856757553E-6 5.8897372198381716E-5 0.0 2.2437094170812084E-5 0.0 5 9.816228699730287E-6 6.450664574108474E-5 0.0 2.383941255648784E-5 0.0 6 1.2620865471081797E-5 6.450664574108474E-5 0.0 2.664404932783935E-5 1.4023183856757553E-6 7 1.2620865471081797E-5 6.731128251243625E-5 0.0 3.0851004484866613E-5 1.4023183856757553E-6 8 1.2620865471081797E-5 7.572519282649077E-5 0.0 3.0851004484866613E-5 4.2069551570272655E-6 9 1.2620865471081797E-5 1.444387937246028E-4 0.0 3.505795964189388E-5 5.609273542703021E-6 10-11 2.944868609919086E-5 1.500480672673058E-4 0.0 3.7862596413245394E-5 5.609273542703021E-6 12-13 3.6460278027569635E-5 1.5285270403865732E-4 0.0 4.06672331845969E-5 5.609273542703021E-6 14-15 4.277071076311053E-5 2.124512354298769E-4 0.0 4.557534753446205E-5 7.011591928378776E-6 16-17 5.7495053812705964E-5 2.2366978251528295E-4 0.0 5.188578027000294E-5 8.413910314054531E-6 18-19 7.011591928378775E-5 2.594289013500147E-4 0.0 6.310432735540899E-5 1.191970627824392E-5 20-21 7.642635201932866E-5 2.951880201847465E-4 0.0 7.50240336336529E-5 1.6126661435271186E-5 22-23 8.203562556203167E-5 3.2113091031974795E-4 0.0 9.39553318402756E-5 1.6827820628109062E-5 24-25 8.834605829757258E-5 3.646027802756964E-4 0.0 1.5145038565298158E-4 1.7528979820946938E-5 26-27 9.535765022595136E-5 3.870398744465084E-4 0.0 2.4610687668609503E-4 1.8230139013784818E-5 28-29 1.065761973113574E-4 3.9264914798921145E-4 0.0 6.100084977689535E-4 1.9632457399460573E-5 30-31 1.290132914821695E-4 4.466384058377281E-4 0.0 0.0017136330672957727 2.1735934977974208E-5 32-33 1.3322024663919673E-4 4.5294883857326893E-4 0.0 0.0036453266435641256 2.2437094170812084E-5 34-35 1.5145038565298158E-4 5.076392556146234E-4 0.0 0.0061176139575104815 2.2437094170812084E-5 36-37 1.724851614381179E-4 5.581227174989505E-4 0.0 0.009795895083137988 2.2437094170812084E-5 38-39 1.8089907175217242E-4 5.833644484411142E-4 0.0 0.015553113215529803 2.734520852067723E-5 40-41 1.977268923802815E-4 6.394571838681444E-4 0.0 0.022047249659594224 2.8046367713515106E-5 42-43 1.9842805157311937E-4 6.618942780389564E-4 0.0 0.027560464392878455 2.8747526906352982E-5 44-45 2.159570313940663E-4 7.38320630058285E-4 0.0 0.033732768767430296 3.225332287054237E-5 46-47 2.2156630493676933E-4 7.90907569521126E-4 0.0 0.040509472366208374 3.3655641256218124E-5 48-49 2.257732600937966E-4 8.014249574136941E-4 0.0 0.04691526275197523 3.3655641256218124E-5 50-51 2.2998021525082386E-4 9.178173834247818E-4 0.0 0.0535047568462656 3.786259641324539E-5 52-53 2.3699180717920264E-4 9.332428856672151E-4 0.0 0.05986427072530515 3.786259641324539E-5 54-55 2.4821035426460865E-4 9.374498408242424E-4 0.0 0.06584235400344089 3.786259641324539E-5 56-57 2.4821035426460865E-4 9.493695471024863E-4 0.0 0.07157292808650487 3.926491479892114E-5 58-59 2.4961267265028445E-4 9.746112780446498E-4 0.0 0.0770195326964695 4.06672331845969E-5 60-61 2.615323789285284E-4 0.0010005541681796515 0.0 0.08250259758446171 4.06672331845969E-5 62-63 2.664404932783935E-4 0.0010117727152650574 0.0 0.08786225845451445 4.06672331845969E-5 64-65 2.664404932783935E-4 0.0010966129775984406 0.0 0.0925929795285916 4.06672331845969E-5 66-67 2.720497668210965E-4 0.0011071303654910088 0.0 0.09724937772822795 4.136839237743478E-5 68-69 2.734520852067723E-4 0.001139383688361551 0.0 0.10193873040992768 4.837998430581355E-5 70-71 2.7695788117096165E-4 0.0011597173049538497 0.0 0.10604752327995765 5.048346188432719E-5 72-73 2.846706322921783E-4 0.0011737404888106072 0.0 0.1092805683181331 5.118462107716507E-5 74-75 2.895787466420434E-4 0.0012221204731164208 0.0 0.11176056838320067 5.469041704135446E-5 76-77 2.9869381614893586E-4 0.00129504102917156 0.0 0.11408841690342242 5.7495053812705964E-5 78-79 3.0360193049880097E-4 0.001324489715270751 0.0 0.11570038188775669 5.7495053812705964E-5 80-81 3.0570540807731464E-4 0.0013293978296206159 0.0 0.11627182662991957 5.889737219838172E-5 82-83 3.064065672701525E-4 0.0013413175358988599 0.0 0.11668410823530824 6.170200896973323E-5 84-85 3.0921120404150406E-4 0.0013658581076481857 0.0 0.11682363891468298 6.170200896973323E-5 86-87 3.2113091031974795E-4 0.001419847365496702 0.0 0.1168720188989888 6.310432735540899E-5 88 3.2814250224812673E-4 0.001500480672673058 0.0 0.1168776281725315 6.450664574108474E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 125640 0.0 50.71681 1 GTATCAA 227120 0.0 35.198013 1 ATCAACG 296440 0.0 26.592194 3 TCAACGC 299785 0.0 26.293951 4 CAACGCA 301295 0.0 26.139042 5 TATCAAC 303675 0.0 26.103968 2 AACGCAG 311750 0.0 25.363237 6 ACGCAGA 352660 0.0 22.283117 7 CGCAGAG 355955 0.0 22.054586 8 GCAGAGT 396700 0.0 19.344995 9 AGAGTAC 369655 0.0 18.275389 10-11 GAGTACT 243380 0.0 18.15007 12-13 GTACATG 259155 0.0 17.791235 1 TACATGG 253950 0.0 17.74656 2 CAGAGTA 389145 0.0 17.679893 10-11 GTGGTAT 49275 0.0 17.636675 1 TGGTATC 46705 0.0 17.305035 2 ACATGGG 255625 0.0 17.223 3 AGTACTT 259110 0.0 17.019876 12-13 GTACTTT 272630 0.0 16.138952 14-15 >>END_MODULE