##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140079_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6012194 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.452308757834494 32.0 25.0 33.0 18.0 33.0 2 30.255349877266102 32.0 28.0 33.0 25.0 33.0 3 31.20058767232062 33.0 31.0 33.0 28.0 33.0 4 32.195869095375166 33.0 33.0 33.0 31.0 33.0 5 32.78855007007425 33.0 33.0 33.0 32.0 34.0 6 37.03779618555223 38.0 37.0 38.0 36.0 38.0 7 37.09371370917172 38.0 38.0 38.0 36.0 38.0 8 37.41608703910752 38.0 38.0 38.0 37.0 38.0 9 37.47412857935057 38.0 38.0 38.0 37.0 38.0 10-11 37.50404419750926 38.0 38.0 38.0 37.0 38.0 12-13 37.53062076839171 38.0 38.0 38.0 37.5 38.0 14-15 37.51749827101388 38.0 38.0 38.0 38.0 38.0 16-17 37.530070220621624 38.0 38.0 38.0 38.0 38.0 18-19 37.458044933347125 38.0 38.0 38.0 37.0 38.0 20-21 37.53518587571957 38.0 38.0 38.0 37.5 38.0 22-23 37.545536956326785 38.0 38.0 38.0 38.0 38.0 24-25 37.54825226838121 38.0 38.0 38.0 38.0 38.0 26-27 37.524958076892574 38.0 38.0 38.0 38.0 38.0 28-29 37.442880772685115 38.0 38.0 38.0 37.0 38.0 30-31 37.47684012164482 38.0 38.0 38.0 37.0 38.0 32-33 37.44797955929476 38.0 38.0 38.0 37.0 38.0 34-35 37.403492545910915 38.0 38.0 38.0 37.0 38.0 36-37 37.365558694316704 38.0 38.0 38.0 37.0 38.0 38-39 37.307323203553196 38.0 38.0 38.0 37.0 38.0 40-41 37.39530389438405 38.0 38.0 38.0 37.0 38.0 42-43 37.33417077845593 38.0 38.0 38.0 37.0 38.0 44-45 37.333821443568624 38.0 38.0 38.0 37.0 38.0 46-47 37.302430232575304 38.0 38.0 38.0 37.0 38.0 48-49 37.266350260111246 38.0 38.0 38.0 37.0 38.0 50-51 37.2329126578325 38.0 38.0 38.0 37.0 38.0 52-53 37.21213341183191 38.0 38.0 38.0 37.0 38.0 54-55 37.189676842653185 38.0 38.0 38.0 37.0 38.0 56-57 37.19032195185026 38.0 38.0 38.0 37.0 38.0 58-59 37.17961894519098 38.0 38.0 38.0 37.0 38.0 60-61 37.15983524553887 38.0 38.0 38.0 36.5 38.0 62-63 37.15730027788898 38.0 38.0 38.0 36.5 38.0 64-65 37.15135495385003 38.0 38.0 38.0 36.0 38.0 66-67 37.135260658077016 38.0 38.0 38.0 36.0 38.0 68-69 37.12341801871909 38.0 38.0 38.0 36.0 38.0 70-71 37.12164274937143 38.0 38.0 38.0 36.0 38.0 72-73 37.069715909328366 38.0 38.0 38.0 36.0 38.0 74-75 37.077555269053306 38.0 38.0 38.0 36.0 38.0 76-77 37.09269434353965 38.0 38.0 38.0 36.0 38.0 78-79 37.10273303432191 38.0 38.0 38.0 36.0 38.0 80-81 37.110946703733745 38.0 38.0 38.0 36.0 38.0 82-83 37.12552766102364 38.0 38.0 38.0 36.0 38.0 84-85 37.118532821963136 38.0 38.0 38.0 36.0 38.0 86-87 37.107720574557746 38.0 38.0 38.0 36.0 38.0 88-89 37.0965697197171 38.0 38.0 38.0 36.0 38.0 90-91 37.090461600711414 38.0 38.0 38.0 36.0 38.0 92-93 37.088763282987856 38.0 38.0 38.0 36.0 38.0 94-95 37.058015931539146 38.0 38.0 38.0 36.0 38.0 96-97 37.073490217728164 38.0 38.0 38.0 36.0 38.0 98-99 37.06916270895965 38.0 38.0 38.0 36.0 38.0 100 35.43028949600545 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 8.0 18 25.0 19 54.0 20 97.0 21 220.0 22 470.0 23 990.0 24 2099.0 25 4171.0 26 7341.0 27 12148.0 28 19676.0 29 29326.0 30 41127.0 31 54085.0 32 70198.0 33 93868.0 34 141066.0 35 261772.0 36 864282.0 37 4409171.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.72642732420145 23.124819325524093 14.259902458237375 24.888850892037084 2 13.070916800118159 20.959280606077137 43.64579057285786 22.32401202094684 3 16.426898400151426 27.84143359312757 32.54312818249045 23.188539824230556 4 11.35051530273308 20.201061376262974 38.48806276044985 29.9603605605541 5 12.08307439054738 38.4479135754332 36.49690998638637 12.972102047633053 6 26.895839834043116 39.25443484242945 19.492315911542 14.357409411985437 7 23.816114383534533 33.666628189309925 23.11818281312945 19.399074614026095 8 22.695444205097346 37.37678572646336 22.872301585994716 17.05546848244458 9 24.005411013838238 16.820831438569225 21.271478474869856 37.902279072722685 10-11 22.833910549127324 27.268414824937455 29.767494195962406 20.130180429972818 12-13 24.212483828698808 24.496473334027478 29.318714599029903 21.97232823824381 14-15 21.404607036965206 26.044019870283623 26.327069618844632 26.22430347390653 16-17 21.061886891873417 29.92603864745549 26.959226531944914 22.052847928726184 18-19 21.3065147265707 27.997516380875272 29.046135237818337 21.64983365473569 20-21 21.759526928622137 27.17542376095205 28.85168882303668 22.21336048738913 22-23 21.34194102341169 28.46032650849289 28.743347997001283 21.45438447109413 24-25 21.61310099245885 28.68864232930191 29.175809931109352 20.522446747129887 26-27 21.7204648662219 28.764497954778616 29.35383681668007 20.161200362319413 28-29 20.943298813788356 27.68666842978706 29.96088569004776 21.40914706637682 30-31 21.428048302214535 29.100658664289508 28.919205830153384 20.552087203342573 32-33 22.891338476369803 27.469885215305993 29.32723826226645 20.311538046057745 34-35 21.377921310432534 27.433022837447872 29.92039929211398 21.268656560005613 36-37 20.662870122987457 28.719782890950896 29.595962149150413 21.021384836911235 38-39 20.76706845747921 27.024739782789737 30.41028558228324 21.797906177447814 40-41 20.97453691111218 26.919790448878288 30.71255011001365 21.39312252999587 42-43 21.858327725537478 26.533216784271634 30.50641521215225 21.102040278038643 44-45 20.723633225474984 27.541610645673227 30.30692401213585 21.427832116715944 46-47 21.964100025563624 26.436046870802464 29.33771585290011 22.2621372507338 48-49 21.444883357596847 26.495650321343607 29.51382132585307 22.545644995206477 50-51 20.732557627924677 26.791372032936668 30.3934046371528 22.082665701985853 52-53 20.949365274977904 27.097176074103274 31.198407377278947 20.75505127363987 54-55 20.927148779144257 27.323801309265004 29.833765417593455 21.91528449399728 56-57 21.949297070937163 28.384823174800395 28.291544143024783 21.37433561123766 58-59 20.26729159893568 29.893567074652267 29.843774056211387 19.995367270200667 60-61 21.35191854566307 31.279555221881477 27.421982470602163 19.946543761853285 62-63 20.179564212323243 32.37892267165407 27.368508641860984 20.073004474161706 64-65 20.184446863486176 32.19006881464128 27.45816068850175 20.167323633370803 66-67 20.38138966176472 31.86659891993015 27.445743726041876 20.306267692263248 68-69 20.590411895700438 31.014590203699026 27.845518068532567 20.549479832067966 70-71 20.7824667516585 30.134952681413687 28.164243531308962 20.918337035618848 72-73 21.235049617376824 28.88122924536196 28.6538348145775 21.229886322683715 74-75 21.245925710190654 28.654948771783584 28.732337309081807 21.36678820894395 76-77 21.312587285091602 28.59605445332714 28.665662282666233 21.425695978915027 78-79 21.376627206580856 28.572035969921256 28.584475988155017 21.466860835342874 80-81 21.39121371162391 28.458450932513045 28.63596182915614 21.514373526706905 82-83 21.46792210044689 28.376805804434298 28.742458769852647 21.41281332526617 84-85 21.666352824969923 28.3042625716151 28.590508750545464 21.43887585286951 86-87 21.436310708983598 28.33006047655259 28.657277708685402 21.576351105778414 88-89 21.586687856062962 28.252099938059693 28.569906246734856 21.59130595914249 90-91 21.63156781369539 28.25778869629548 28.616155796131743 21.494487693877385 92-93 21.64845974079899 28.244664648122004 28.56299060069547 21.543885010383537 94-95 21.552875806394045 28.3567802734775 28.52458066072391 21.565763259404548 96-97 21.644943198452495 28.429891823509667 28.63386444887081 21.291300529167025 98-99 22.652448802544754 30.318817529377746 28.877770183232997 18.1509634848445 100 21.5008137078671 31.28791957634542 22.841845283833443 24.369421431954045 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1287.0 1 1319.0 2 2002.5 3 2883.5 4 3559.0 5 4594.0 6 5534.5 7 6935.0 8 8857.0 9 10168.5 10 10618.0 11 10942.0 12 12076.5 13 14424.0 14 18833.0 15 23623.0 16 26656.5 17 27879.0 18 27150.5 19 25106.5 20 22873.5 21 21829.5 22 23289.5 23 28000.0 24 35577.0 25 46528.5 26 61028.0 27 76497.5 28 91212.0 29 106642.0 30 121794.0 31 135991.5 32 151722.5 33 167290.5 34 181982.5 35 196299.5 36 211109.5 37 223556.5 38 232116.5 39 238935.5 40 243592.0 41 245378.5 42 263477.0 43 336210.0 44 356545.0 45 325066.5 46 300462.0 47 258079.0 48 235491.0 49 222635.5 50 213156.5 51 202738.5 52 189740.5 53 176188.5 54 163022.5 55 148444.0 56 133516.5 57 118966.0 58 104319.5 59 90768.0 60 76601.5 61 62199.0 62 48167.5 63 36750.0 64 28564.0 65 21332.5 66 15430.5 67 11516.0 68 8599.0 69 6141.5 70 4334.5 71 3102.5 72 2175.0 73 1490.0 74 1055.0 75 711.5 76 440.5 77 270.5 78 183.5 79 132.5 80 87.5 81 50.0 82 33.5 83 26.0 84 18.5 85 12.0 86 8.0 87 5.5 88 4.5 89 4.5 90 4.0 91 1.5 92 0.0 93 0.5 94 1.0 95 1.0 96 0.5 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 3.6592298917832657E-4 3 0.0 4 0.0 5 0.009480731992347552 6 4.989858943340817E-4 7 0.0 8 8.316431572234695E-5 9 1.995943577336327E-4 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 7.485667442070916E-5 26-27 2.495541299544813E-5 28-29 6.241340659946047E-4 30-31 2.3329357621971924E-4 32-33 0.0014620337407311237 34-35 3.0181225684726073E-4 36-37 0.0014407448195745151 38-39 8.147037045680691E-4 40-41 7.270325499315264E-4 42-43 1.034356050004564E-4 44-45 6.088446867646298E-5 46-47 4.0423579355045307E-4 48-49 0.0017487177771009757 50-51 0.001756323863611416 52-53 0.001961542202444895 54-55 0.0013221776795252853 56-57 0.003331611693846605 58-59 4.645716282575879E-4 60-61 7.505784614379995E-5 62-63 0.0022011677574464935 64-65 0.002276002900991377 66-67 0.0032889789633196867 68-69 8.467257116729607E-4 70-71 0.005045542121121494 72-73 9.635264397415277E-4 74-75 0.003940435903552574 76-77 2.041281151024723E-4 78-79 0.0010112849615075583 80-81 0.0 82-83 1.114659567920053E-5 84-85 9.471539939341552E-4 86-87 0.0 88-89 0.0 90-91 0.0030853470092118643 92-93 5.914825332250526E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 41.0 20-21 175.0 22-23 387.0 24-25 600.0 26-27 1736.0 28-29 4646.0 30-31 15317.0 32-33 19485.0 34-35 26070.0 36-37 40180.0 38-39 46946.0 40-41 44262.0 42-43 49676.0 44-45 58035.0 46-47 58113.0 48-49 54204.0 50-51 49329.0 52-53 47304.0 54-55 50005.0 56-57 51625.0 58-59 50996.0 60-61 59128.0 62-63 61693.0 64-65 71095.0 66-67 98531.0 68-69 111527.0 70-71 141969.0 72-73 78428.0 74-75 53071.0 76-77 55396.0 78-79 56884.0 80-81 56317.0 82-83 52107.0 84-85 50840.0 86-87 52256.0 88-89 52334.0 90-91 52073.0 92-93 51252.0 94-95 57785.0 96-97 164779.0 98-99 356808.0 100-101 3608789.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.46427624982037 #Duplication Level Percentage of deduplicated Percentage of total 1 89.78668145678242 76.73553747577077 2 7.092196517905687 12.122588848486116 3 1.8183483324452667 4.662114726075075 4 0.6375866096249361 2.1796351255268767 5 0.2794458346740228 1.1941318005721158 6 0.14172886353359537 0.7267652847364974 7 0.08154963261470694 0.4878706230898272 8 0.04659311869733483 0.31856377341517556 9 0.02853226896850547 0.21946407454426758 >10 0.08513343002233768 1.056864104946031 >50 0.0012263431497811852 0.07400617098563438 >100 8.575968657088575E-4 0.14177473149696945 >500 8.999604726018316E-5 0.053429912348890045 >1k 2.999866845353845E-5 0.02725334800573901 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.663286314446939E-5 0.0 0.0 0.0 3 0.0 1.663286314446939E-5 0.0 0.0 0.0 4 0.0 4.989858943340817E-5 0.0 1.663286314446939E-5 0.0 5 0.0 4.989858943340817E-5 0.0 1.663286314446939E-5 0.0 6 0.0 4.989858943340817E-5 0.0 1.663286314446939E-5 0.0 7 0.0 4.989858943340817E-5 0.0 1.663286314446939E-5 0.0 8 0.0 4.989858943340817E-5 0.0 3.326572628893878E-5 0.0 9 0.0 1.3306290515575513E-4 0.0 3.326572628893878E-5 0.0 10-11 0.0 1.3306290515575513E-4 0.0 6.653145257787756E-5 0.0 12-13 0.0 1.3306290515575513E-4 0.0 7.484788415011226E-5 0.0 14-15 0.0 1.663286314446939E-4 0.0 8.316431572234695E-5 0.0 16-17 0.0 1.663286314446939E-4 0.0 8.316431572234695E-5 0.0 18-19 0.0 1.8296149458916328E-4 0.0 9.979717886681634E-5 0.0 20-21 0.0 2.1622722087810207E-4 0.0 1.1643004201128573E-4 0.0 22-23 0.0 2.578093787392755E-4 0.0 1.2474647358352042E-4 0.0 24-25 0.0 3.3265726288938776E-4 0.0 1.8296149458916328E-4 0.0 26-27 0.0 3.6592298917832657E-4 0.0 2.6612581031151025E-4 0.0 28-29 0.0 3.6592298917832657E-4 0.0 6.486816626343063E-4 0.0 30-31 0.0 3.8255585232279597E-4 0.0 0.0017464506301692862 0.0 32-33 0.0 3.8255585232279597E-4 0.0 0.004831846743468357 0.0 34-35 0.0 4.2413801018396946E-4 0.0 0.008349697298523634 0.0 36-37 0.0 4.6572016804514294E-4 0.0 0.012898785368536012 0.0 38-39 0.0 4.823530311896123E-4 0.0 0.01985963859449645 0.0 40-41 0.0 5.239351890507858E-4 0.0 0.02729452842007427 0.0 42-43 0.0 5.322516206230205E-4 0.0 0.03434686239332929 0.0 44-45 0.0 6.070995047731327E-4 0.0 0.042106093050224266 0.0 46-47 0.0 6.81947388923245E-4 0.0 0.05078844761163728 0.0 48-49 0.0 6.81947388923245E-4 0.0 0.058930234120855046 0.0 50-51 0.0 7.651117046455919E-4 0.0 0.06720508353522858 0.0 52-53 0.0 7.651117046455919E-4 0.0 0.07485620058168449 0.0 54-55 0.0 7.651117046455919E-4 0.0 0.08203328102852303 0.0 56-57 0.0 7.817445677900613E-4 0.0 0.08820407325512117 0.0 58-59 0.0 7.90060999362296E-4 0.0 0.09459109270259741 0.0 60-61 0.0 8.066938625067655E-4 0.0 0.1005789234346064 0.0 62-63 0.0 8.316431572234695E-4 0.0 0.10645032412460409 0.0 64-65 0.0 9.148074729458164E-4 0.0 0.11227182622516838 0.0 66-67 0.0 9.148074729458164E-4 0.0 0.11825965695717737 0.0 68-69 0.0 9.647060623792246E-4 0.0 0.12401462760516377 0.0 70-71 0.0 9.81338925523694E-4 0.0 0.1285304499488872 0.0 72-73 0.0 9.81338925523694E-4 0.0 0.1322478948616761 0.0 74-75 0.0 9.979717886681634E-4 0.0 0.13534992383811967 0.0 76-77 0.0 0.001056186809673806 0.0 0.13801118194123477 0.0 78-79 0.0 0.0010811361043905102 0.0 0.1399821762238544 0.0 80-81 0.0 0.0010811361043905102 0.0 0.1407472879285 0.0 82-83 0.0 0.0010811361043905102 0.0 0.1412545902544063 0.0 84-85 0.0 0.0010811361043905102 0.0 0.14152903249629004 0.0 86-87 0.0 0.0010977689675349797 0.0 0.14164546253830132 0.0 88 0.0 0.0012141990095462655 0.0 0.14164546253830132 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 15175 0.0 64.87902 1 TATACAC 18850 0.0 53.680252 3 TTATACA 18910 0.0 52.874996 2 GGTATCA 8530 0.0 51.691803 1 GTATCAA 16230 0.0 37.320454 1 TACACAT 28165 0.0 36.029503 5 ATACACA 30800 0.0 33.511684 4 ACACATC 31460 0.0 31.77897 6 ATCAACG 19930 0.0 30.80765 3 TCAACGC 19975 0.0 30.717518 4 ACATCTC 33225 0.0 30.102997 8 CAACGCA 20425 0.0 30.020485 5 TATCAAC 20520 0.0 30.002562 2 CACATCT 33835 0.0 29.474632 7 AACGCAG 21090 0.0 29.12988 6 CATCTCC 35975 0.0 27.652037 9 ACGCAGA 23975 0.0 25.624361 7 TGGTATC 3285 0.0 25.33293 2 CGCAGAG 24310 0.0 25.25422 8 GTGGTAT 3820 0.0 23.627308 1 >>END_MODULE