##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140078_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 43041742 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.87292166288251 31.0 30.0 33.0 28.0 34.0 2 31.559944808925252 33.0 31.0 34.0 28.0 34.0 3 31.622605725390947 33.0 31.0 34.0 28.0 34.0 4 35.05862404453797 37.0 35.0 37.0 32.0 37.0 5 35.09858985261331 37.0 35.0 37.0 32.0 37.0 6 35.12240085450073 37.0 35.0 37.0 32.0 37.0 7 35.23596161605169 37.0 35.0 37.0 32.0 37.0 8 35.40830698720326 37.0 35.0 37.0 33.0 37.0 9 37.288759595278464 39.0 37.0 39.0 34.0 39.0 10-11 37.422351353716124 39.0 37.0 39.0 34.5 39.0 12-13 37.450409953203106 39.0 37.0 39.0 34.5 39.0 14-15 38.72809475276349 40.0 38.0 41.0 34.0 41.0 16-17 38.764408152904224 40.0 38.0 41.0 34.5 41.0 18-19 38.833087401527564 40.0 38.5 41.0 35.0 41.0 20-21 38.86824628936316 40.0 39.0 41.0 35.0 41.0 22-23 38.8291837696528 40.0 38.5 41.0 34.0 41.0 24-25 38.802317122423474 40.0 38.0 41.0 34.0 41.0 26-27 38.70716245347977 40.0 38.0 41.0 34.0 41.0 28-29 38.649287204910024 40.0 38.0 41.0 34.0 41.0 30-31 38.544041873953844 40.0 38.0 41.0 34.0 41.0 32-33 38.44837792246 40.0 38.0 41.0 34.0 41.0 34-35 38.39471128777558 40.0 38.0 41.0 34.0 41.0 36-37 38.33251012533691 40.0 38.0 41.0 34.0 41.0 38-39 38.27321011625304 40.0 38.0 41.0 34.0 41.0 40-41 38.243213459678294 40.0 38.0 41.0 33.5 41.0 42-43 38.1806879312533 40.0 38.0 41.0 33.0 41.0 44-45 38.11982842244446 40.0 38.0 41.0 33.0 41.0 46-47 38.06994050890465 40.0 38.0 41.0 33.0 41.0 48-49 37.986095860458576 40.0 37.0 41.0 33.0 41.0 50-51 37.915370350574776 40.0 37.0 41.0 33.0 41.0 52-53 37.82897478881945 40.0 37.0 41.0 33.0 41.0 54-55 37.7187366622082 40.0 37.0 41.0 33.0 41.0 56-57 37.55175633402776 39.5 36.0 41.0 32.0 41.0 58-59 37.40370378820498 39.0 36.0 41.0 32.0 41.0 60-61 37.241971096214215 39.0 35.5 41.0 32.0 41.0 62-63 37.065128539911534 39.0 35.0 40.5 31.0 41.0 64-65 36.84446769915597 38.5 35.0 40.0 31.0 41.0 66-67 36.59830123682127 38.0 35.0 40.0 31.0 41.0 68-69 36.31729104425828 37.5 35.0 40.0 31.0 41.0 70-71 36.033667387079966 37.0 35.0 39.5 31.0 41.0 72-73 35.70988361532183 36.5 34.5 39.0 30.5 41.0 74-75 35.38051379385743 36.0 34.0 39.0 30.0 40.0 76-77 35.36254941425711 36.0 34.0 38.5 31.0 40.0 78-79 35.10888035438521 35.0 34.0 37.5 31.0 39.0 80-81 34.82768615642449 35.0 34.0 37.0 31.0 39.0 82-83 34.53332293200842 35.0 34.0 36.5 30.0 39.0 84-85 34.28439139522753 35.0 34.0 36.0 30.0 37.5 86-87 34.07882600393877 35.0 34.0 36.0 30.0 37.0 88-89 33.90136437584867 35.0 34.0 35.5 30.0 37.0 90-91 33.77445321905962 35.0 34.0 35.0 30.0 36.0 92-93 33.68724076324059 35.0 34.0 35.0 30.0 36.0 94-95 33.64167402694272 35.0 34.0 35.0 30.0 36.0 96-97 33.64170982165836 35.0 34.0 35.0 30.0 36.0 98-99 33.685754861955836 35.0 34.0 35.0 30.0 35.5 100 33.1924034023115 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 1.0 16 15.0 17 588.0 18 5777.0 19 20296.0 20 41175.0 21 65292.0 22 93777.0 23 129789.0 24 176174.0 25 235937.0 26 306969.0 27 389890.0 28 481281.0 29 586786.0 30 712432.0 31 876860.0 32 1096126.0 33 1425974.0 34 1988425.0 35 2853646.0 36 4476505.0 37 8220314.0 38 1.1851389E7 39 6719994.0 40 286329.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.331792704858465 19.78160177624781 9.731959733414136 28.154645785479595 2 13.82630007013855 22.9802127873722 38.469069289212186 24.724417853277064 3 17.26033532750603 28.320937846799975 29.03566495984294 25.383061865851065 4 11.387006594668032 20.09300181205491 38.62194053391241 29.89805105936465 5 12.213803985907449 39.81011735073362 34.71224747362688 13.26383118973205 6 27.318334074260175 40.68305036263283 18.950186318336794 13.048429244770205 7 25.070603604243253 35.032461069392404 22.956984145983782 16.939951180380557 8 24.626489327499804 37.202713589055016 20.716591814522747 17.454205268922436 9 26.345239465447285 17.01478532165357 20.986885242702304 35.65308997019684 10-11 23.44554734796747 27.966399454743257 28.729320481499098 19.858732715790172 12-13 24.742807220553647 25.80721235230703 29.014863734252756 20.435116692886563 14-15 21.946084078483747 26.591904132786198 27.27945827141615 24.182553517313902 16-17 20.627449340390466 29.610092570407964 28.065475085854512 21.696983003347057 18-19 20.590547891858094 28.66690316576871 30.19635566794671 20.546193274426486 20-21 21.88512443166509 27.610711064119315 30.041892588955537 20.462271915260057 22-23 21.530253717593194 27.540716718467923 29.931288501982095 20.997741061956784 24-25 21.033762507764948 27.72911045759921 30.158911724416747 21.078215310219093 26-27 20.94637223018774 27.952217246163297 29.972519081691708 21.128891441957254 28-29 20.830637260048114 27.93303060750107 30.18534912743162 21.05098300501919 30-31 21.276152793558797 27.686495693499293 30.076028966721935 20.961322546219975 32-33 21.033043391040305 27.87344039082581 30.024278128043 21.06923809009088 34-35 21.17923684233658 27.918108623218185 30.128851165255277 20.77380336918996 36-37 21.122785150986935 27.793696302168208 30.03258898818692 21.050929558657934 38-39 20.955407829503 27.900509856127943 30.090477793886635 21.053604520482423 40-41 21.174897736957238 27.755748219345485 29.98895248295496 21.08040156074232 42-43 21.180461480023062 27.831748505948212 29.704247813591973 21.283542200436752 44-45 21.25084983608218 28.207379393923972 29.34999214924256 21.191778620751286 46-47 21.32754916148804 28.12960399947375 28.946920606421756 21.595926232616453 48-49 21.432629019592973 28.264983720739465 28.806558489532847 21.495828770134707 50-51 21.389039416514034 28.401692547371304 28.60984896244276 21.599419073671893 52-53 21.374771989396073 28.439432571665296 28.581651559730126 21.604143879208507 54-55 21.38902430054768 28.407615740469126 28.598760697476422 21.604599261506774 56-57 21.528358093070977 28.440265522129955 28.437624746056922 21.593751638742145 58-59 21.414148571128273 28.481581412781164 28.582900261186513 21.52136975490405 60-61 21.52632472921805 28.56591298841982 28.42129127947541 21.48647100288672 62-63 21.43773012593641 28.58054321692541 28.431796327879276 21.549930329258903 64-65 21.333642311449218 28.482758501154095 28.482939889420074 21.70065929797662 66-67 21.529403239321486 28.52759932301111 28.266455474259978 21.67654196340743 68-69 21.465785063404166 28.496368025452462 28.364316130806948 21.67353078033642 70-71 21.457301638450016 28.236344164773136 28.45242691684607 21.853927279930783 72-73 21.50812107434006 28.272345431142003 28.46889274432917 21.75064075018876 74-75 21.463035815682048 28.37479566910793 28.415890795618726 21.746277719591305 76-77 21.495383042199148 28.355706293863182 28.31609241902924 21.832818244908434 78-79 21.45823989388983 28.384740208701974 28.332424169521996 21.824595727886194 80-81 21.470207539099405 28.476767477325215 28.308723353783165 21.744301629792215 82-83 21.566835654984256 28.370677120958316 28.45138828767166 21.611098936385773 84-85 21.66743395159448 28.434892945589784 28.270536807362255 21.62713629545348 86-87 21.378480172307473 28.535943407530528 28.414167428194194 21.6714089919678 88-89 21.520022977241656 28.39102538183812 28.360827743249207 21.728123897671015 90-91 21.5830446819468 28.323551950012217 28.435051784105557 21.658351583935424 92-93 21.5759277468197 28.393188540068476 28.414754609307607 21.61612910380422 94-95 21.306786167026832 28.446989886218937 28.566719675547976 21.679504271206255 96-97 21.384582392357494 28.60040677540987 28.615570014158326 21.399440818074307 98-99 22.229900055405437 30.577627288521793 28.90576126106035 18.28671139501242 100 21.450456292341684 31.508894624738932 22.619428552629728 24.421220530289652 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 84258.0 1 74952.0 2 43775.5 3 20614.5 4 19675.5 5 22266.0 6 26779.0 7 36717.0 8 55034.5 9 68285.5 10 67221.5 11 64907.0 12 76045.5 13 105641.0 14 170647.5 15 257995.0 16 328189.5 17 367646.0 18 370970.0 19 342927.5 20 297955.0 21 251209.0 22 222716.0 23 225241.0 24 258045.0 25 316613.0 26 401560.5 27 498716.0 28 591401.0 29 692757.0 30 800560.5 31 909719.0 32 1036174.5 33 1158895.5 34 1277410.5 35 1390686.0 36 1500961.0 37 1603853.0 38 1666833.5 39 1705790.0 40 1742382.0 41 1758409.0 42 1766197.0 43 1795638.5 44 1820126.5 45 1842673.0 46 1859093.0 47 1868323.0 48 1847859.5 49 1779697.0 50 1709902.5 51 1627499.5 52 1518118.0 53 1394562.0 54 1263411.0 55 1132306.0 56 1013595.0 57 896645.0 58 780865.5 59 676636.5 60 562268.0 61 437288.0 62 328061.0 63 248594.0 64 188725.0 65 141293.5 66 105297.0 67 79669.5 68 59885.5 69 43216.0 70 30621.0 71 21377.5 72 15052.0 73 10921.0 74 7722.0 75 5324.0 76 3791.0 77 2544.5 78 1555.0 79 944.5 80 634.0 81 440.0 82 321.5 83 236.0 84 177.0 85 130.5 86 100.5 87 83.0 88 62.0 89 53.0 90 50.5 91 37.0 92 24.0 93 13.5 94 6.5 95 7.5 96 13.0 97 16.5 98 24.0 99 36.5 100 51.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.002829811116845596 3 0.0 4 0.0 5 0.0 6 0.0076785925625408 7 6.96997812030935E-5 8 0.0 9 0.0 10-11 0.0 12-13 2.323326040103117E-6 14-15 9.409470462417622E-5 16-17 4.170370241985094E-4 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.6506096617080097E-4 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 9.503898395098902E-4 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.00391644543766164 52-53 0.0 54-55 0.0 56-57 8.422423897666358E-4 58-59 0.0034170935647931853 60-61 0.0036968425453915775 62-63 0.002550756932790845 64-65 0.002881974943666459 66-67 0.0029812436257106788 68-69 0.00148355336706191 70-71 0.0 72-73 0.004075313809634344 74-75 0.0033009703458040463 76-77 0.006297900920996216 78-79 1.4355971590336157E-5 80-81 2.4811530309896013E-4 82-83 0.0034197607065357656 84-85 0.002080151421976241 86-87 1.1237665875065504E-4 88-89 7.122794352848593E-5 90-91 4.436028236348147E-4 92-93 1.5564426171669768E-6 94-95 4.582241903881693E-4 96-97 5.676908890853765E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 12513.0 20-21 32628.0 22-23 44752.0 24-25 42866.0 26-27 50597.0 28-29 79118.0 30-31 118287.0 32-33 130223.0 34-35 174906.0 36-37 259443.0 38-39 346643.0 40-41 357194.0 42-43 402798.0 44-45 488014.0 46-47 465904.0 48-49 406645.0 50-51 344164.0 52-53 303755.0 54-55 311292.0 56-57 335618.0 58-59 357012.0 60-61 356044.0 62-63 326218.0 64-65 330313.0 66-67 342874.0 68-69 359344.0 70-71 365443.0 72-73 329042.0 74-75 315850.0 76-77 334621.0 78-79 362716.0 80-81 381229.0 82-83 362934.0 84-85 350842.0 86-87 368101.0 88-89 407201.0 90-91 445473.0 92-93 466933.0 94-95 550794.0 96-97 1370051.0 98-99 2615628.0 100-101 2.7235719E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 75.91936649497264 #Duplication Level Percentage of deduplicated Percentage of total 1 85.42418716407468 64.85350172844524 2 9.018378905291117 13.69339226602653 3 2.540970978528299 5.787267209159376 4 1.1293761114458487 3.429660756620979 5 0.6072936327807607 2.305267393857295 6 0.35116024645764654 1.5995918069569792 7 0.23208262196618293 1.2333695943915381 8 0.16378127427573264 0.9947336469402385 9 0.11670419964782104 0.7974098014108845 >10 0.40940820076987483 4.722927716992541 >50 0.005396035706418477 0.272446301228383 >100 0.0011264361172515203 0.13679349758179613 >500 7.524206963586787E-5 0.0431514235040555 >1k 4.4214869461609515E-5 0.06392136717112087 >5k 1.4735999230763194E-5 0.06656548971306178 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 2.323326040103117E-6 0.0 2 0.0 0.0 0.0 3.2526564561443635E-5 0.0 3 0.0 0.0 0.0 3.2526564561443635E-5 0.0 4 0.0 0.0 0.0 6.272980308278415E-5 0.0 5 4.646652080206234E-6 0.0 0.0 6.96997812030935E-5 0.0 6 6.9699781203093496E-6 0.0 0.0 7.434643328329974E-5 0.0 7 9.293304160412467E-6 0.0 0.0 7.666975932340285E-5 0.0 8 1.1616630200515584E-5 0.0 0.0 7.666975932340285E-5 0.0 9 1.6263282280721818E-5 4.646652080206234E-6 0.0 7.666975932340285E-5 0.0 10-11 1.6263282280721818E-5 4.646652080206234E-6 0.0 8.36397374437122E-5 0.0 12-13 1.8586608320824934E-5 4.646652080206234E-6 0.0 8.596306348381532E-5 0.0 14-15 2.207159738097961E-5 6.9699781203093496E-6 0.0 1.1151964992494959E-4 0.0 16-17 2.555658644113428E-5 9.293304160412467E-6 0.0 1.5682450770696036E-4 0.0 18-19 3.020323852134052E-5 1.0454967180464026E-5 0.0 2.0909934360928049E-4 0.0 20-21 5.459816194242324E-5 1.1616630200515584E-5 0.0 2.3233260401031165E-4 0.0 22-23 5.5759824962474797E-5 1.1616630200515584E-5 0.0 2.706674836720131E-4 0.0 24-25 5.808315100257791E-5 1.3939956240618699E-5 0.0 3.914804377573752E-4 0.0 26-27 5.808315100257791E-5 1.3939956240618699E-5 0.0 5.39011641303923E-4 0.0 28-29 6.156814006273259E-5 1.3939956240618699E-5 0.0 0.0012476260835353737 0.0 30-31 6.272980308278415E-5 1.8586608320824934E-5 0.0 0.0037626265219469976 0.0 32-33 6.621479214293882E-5 1.8586608320824934E-5 0.0 0.008228059171025186 0.0 34-35 7.086144422314506E-5 2.4394923421082726E-5 0.0 0.013714593614728697 0.0 36-37 7.666975932340285E-5 3.136490154139208E-5 0.0 0.022798798431531882 0.0 38-39 7.666975932340285E-5 3.2526564561443635E-5 0.0 0.044796049379228195 0.0 40-41 7.666975932340285E-5 4.0658205701804544E-5 0.0 0.06917238619199009 0.0 42-43 7.666975932340285E-5 4.298153174190766E-5 0.0 0.08508949289273654 0.0 44-45 8.015474838355752E-5 4.6466520802062336E-5 0.0 0.10382014742804788 0.0 46-47 8.131641140360909E-5 4.8789846842165446E-5 0.0 0.12288536091313405 0.0 48-49 8.36397374437122E-5 4.8789846842165446E-5 0.0 0.14072850490112598 0.0 50-51 8.36397374437122E-5 5.808315100257791E-5 0.0 0.15898636258727633 0.0 52-53 8.36397374437122E-5 5.808315100257791E-5 0.0 0.19396635944706886 0.0 54-55 8.36397374437122E-5 5.924481402262947E-5 0.0 0.23126038904280408 1.1616630200515584E-6 56-57 8.828638952391844E-5 6.040647704268103E-5 2.323326040103117E-6 0.268705434831146 2.323326040103117E-6 58-59 8.828638952391844E-5 6.272980308278415E-5 2.323326040103117E-6 0.29546434249803366 2.323326040103117E-6 60-61 8.828638952391844E-5 6.272980308278415E-5 2.323326040103117E-6 0.3099793219335779 2.323326040103117E-6 62-63 9.060971556402156E-5 6.505312912288727E-5 2.323326040103117E-6 0.3247974954173556 2.323326040103117E-6 64-65 9.525636764422779E-5 6.505312912288727E-5 2.323326040103117E-6 0.33138993305614817 2.323326040103117E-6 66-67 9.525636764422779E-5 6.505312912288727E-5 2.323326040103117E-6 0.33618295467688086 2.323326040103117E-6 68-69 9.525636764422779E-5 6.505312912288727E-5 2.323326040103117E-6 0.34110724421887945 2.323326040103117E-6 70-71 9.525636764422779E-5 6.621479214293882E-5 2.323326040103117E-6 0.34548903713051393 2.323326040103117E-6 72-73 9.525636764422779E-5 6.96997812030935E-5 2.323326040103117E-6 0.3490890308296537 2.323326040103117E-6 74-75 9.525636764422779E-5 7.086144422314506E-5 2.323326040103117E-6 0.3518967703491183 2.323326040103117E-6 76-77 1.0222634576453713E-4 7.899308536350597E-5 2.323326040103117E-6 0.3544559139822919 2.323326040103117E-6 78-79 1.0222634576453713E-4 8.36397374437122E-5 2.323326040103117E-6 0.356103152144725 2.323326040103117E-6 80-81 1.0222634576453713E-4 8.36397374437122E-5 2.323326040103117E-6 0.35667933700267057 2.323326040103117E-6 82-83 1.0222634576453713E-4 8.36397374437122E-5 2.323326040103117E-6 0.3572415819043755 2.323326040103117E-6 84-85 1.0222634576453713E-4 8.36397374437122E-5 2.323326040103117E-6 0.3574971477687868 2.323326040103117E-6 86-87 1.0338800878458869E-4 8.596306348381532E-5 2.323326040103117E-6 0.3576075057556918 2.323326040103117E-6 88 1.0454967180464024E-4 9.293304160412467E-5 2.323326040103117E-6 0.357613314070792 2.323326040103117E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 81650 0.0 52.762543 1 GTATCAA 148370 0.0 37.749546 1 ATCAACG 181860 0.0 30.22677 3 TCAACGC 185100 0.0 29.715826 4 TATCAAC 187065 0.0 29.691776 2 CAACGCA 185140 0.0 29.664047 5 AACGCAG 193325 0.0 28.544958 6 ACGCAGA 219875 0.0 25.010263 7 CGCAGAG 222395 0.0 24.743858 8 GCAGAGT 252210 0.0 21.657291 9 TACATGG 190135 0.0 20.491495 2 GTACATG 194675 0.0 20.358713 1 ACATGGG 191145 0.0 20.06416 3 GAGTACT 140980 0.0 19.899523 12-13 CAGAGTA 249500 0.0 19.203598 10-11 GTACTTT 151400 0.0 18.551609 14-15 AGAGTAC 237145 0.0 18.090197 10-11 CATGGGG 112250 0.0 17.842468 4 GTGGTAT 30485 0.0 17.299675 1 AGTACTT 151070 0.0 17.203075 12-13 >>END_MODULE