##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140077_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5378306 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.521609778246162 18.0 18.0 30.0 18.0 33.0 2 31.052201566813046 32.0 30.0 33.0 27.0 33.0 3 31.87980825189195 33.0 31.0 33.0 29.0 33.0 4 32.639325653839705 33.0 33.0 33.0 31.0 34.0 5 33.028792709079774 33.0 33.0 34.0 33.0 34.0 6 37.07478060935915 38.0 38.0 38.0 36.0 38.0 7 37.31327931136681 38.0 38.0 38.0 36.0 38.0 8 37.2674968661136 38.0 38.0 38.0 36.0 38.0 9 37.46889317937656 38.0 38.0 38.0 37.0 38.0 10-11 37.52321028219666 38.0 38.0 38.0 37.5 38.0 12-13 37.55430929366979 38.0 38.0 38.0 38.0 38.0 14-15 37.52814120282483 38.0 38.0 38.0 37.5 38.0 16-17 37.539376338943896 38.0 38.0 38.0 38.0 38.0 18-19 37.49354583022982 38.0 38.0 38.0 37.5 38.0 20-21 37.57207879117567 38.0 38.0 38.0 38.0 38.0 22-23 37.590181180022775 38.0 38.0 38.0 38.0 38.0 24-25 37.600951451437325 38.0 38.0 38.0 38.0 38.0 26-27 37.58208860052116 38.0 38.0 38.0 38.0 38.0 28-29 37.5159442039714 38.0 38.0 38.0 38.0 38.0 30-31 37.55246396250669 38.0 38.0 38.0 38.0 38.0 32-33 37.542970617968784 38.0 38.0 38.0 38.0 38.0 34-35 37.52273811873967 38.0 38.0 38.0 38.0 38.0 36-37 37.50447975600228 38.0 38.0 38.0 38.0 38.0 38-39 37.4909213933844 38.0 38.0 38.0 38.0 38.0 40-41 37.46744591489259 38.0 38.0 38.0 38.0 38.0 42-43 37.39417027496884 38.0 38.0 38.0 37.0 38.0 44-45 37.39079085034735 38.0 38.0 38.0 37.0 38.0 46-47 37.354703098834335 38.0 38.0 38.0 37.0 38.0 48-49 37.31315350538493 38.0 38.0 38.0 37.0 38.0 50-51 37.2819885218488 38.0 38.0 38.0 37.0 38.0 52-53 37.26531046615876 38.0 38.0 38.0 37.0 38.0 54-55 37.25627112686732 38.0 38.0 38.0 37.0 38.0 56-57 37.259514758357426 38.0 38.0 38.0 37.0 38.0 58-59 37.2578131474004 38.0 38.0 38.0 37.0 38.0 60-61 37.26078469672855 38.0 38.0 38.0 37.0 38.0 62-63 37.26665243493764 38.0 38.0 38.0 37.0 38.0 64-65 37.27352825086683 38.0 38.0 38.0 37.0 38.0 66-67 37.28411151031737 38.0 38.0 38.0 37.0 38.0 68-69 37.29394444876817 38.0 38.0 38.0 37.0 38.0 70-71 37.30388989308764 38.0 38.0 38.0 37.0 38.0 72-73 37.28650723219238 38.0 38.0 38.0 37.0 38.0 74-75 37.28623948649093 38.0 38.0 38.0 37.0 38.0 76-77 37.285155025418234 38.0 38.0 38.0 37.0 38.0 78-79 37.27073316273261 38.0 38.0 38.0 37.0 38.0 80-81 37.26190043661839 38.0 38.0 38.0 37.0 38.0 82-83 37.26223993959887 38.0 38.0 38.0 37.0 38.0 84-85 37.24599433517946 38.0 38.0 38.0 37.0 38.0 86-87 37.23008682586381 38.0 38.0 38.0 37.0 38.0 88-89 37.21144112773449 38.0 38.0 38.0 36.5 38.0 90-91 37.197601767123174 38.0 38.0 38.0 36.0 38.0 92-93 37.19049849126387 38.0 38.0 38.0 36.0 38.0 94-95 37.14992547550972 38.0 38.0 38.0 36.0 38.0 96-97 37.16213197657004 38.0 38.0 38.0 36.0 38.0 98-99 37.150539966673485 38.0 38.0 38.0 36.0 38.0 100 35.57433337632292 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 8.0 19 11.0 20 40.0 21 121.0 22 323.0 23 788.0 24 1811.0 25 3460.0 26 5950.0 27 9843.0 28 15564.0 29 23048.0 30 32660.0 31 43505.0 32 56761.0 33 73649.0 34 109853.0 35 207301.0 36 810929.0 37 3982678.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.11941901409106 19.355704193848396 20.06862383806351 22.456252953997037 2 13.999907033821096 21.965695479984383 42.69038543777774 21.344012048416786 3 17.504768229996582 27.75297649482941 31.44930764445162 23.292947630722388 4 11.596234948327597 18.92595921466722 40.44156282665954 29.036243010345636 5 12.370336184111927 38.68331887304187 35.54016719394356 13.406177748902648 6 27.286090773157103 38.966782354080834 20.266475230212748 13.480651642549319 7 25.06850670080877 34.13716140360924 23.941664903410107 16.852666992171887 8 23.777412441761403 36.40441804538455 22.37756646795478 17.440603044899266 9 26.182776375950834 16.710097374653213 22.18521134656143 34.92191490283452 10-11 23.46294539581794 27.55673440670724 29.302646595414988 19.67767360205983 12-13 24.663899748359427 25.661992828225095 29.441919072659683 20.232188350755795 14-15 21.89169786918037 26.609307837821056 28.077279351528155 23.421714941470416 16-17 20.400568506143014 29.673348820241912 28.69108786298139 21.234994810633683 18-19 20.340456641924057 28.45127257541687 31.153647635519437 20.054623147139637 20-21 22.05560879930918 27.237793113838865 30.83036540095336 19.87623268589859 22-23 21.596240156286115 27.244035525390725 30.553977922986142 20.605746395337025 24-25 20.867520997996696 27.519631622551614 30.971317963733934 20.641529415717752 26-27 20.75434558511123 27.74808367427263 30.81635573754296 20.681215003073177 28-29 20.614437514926117 27.81615253111085 30.86521306739165 20.70419688657138 30-31 20.885332204234995 27.661723781064325 30.78181938851148 20.6711246261892 32-33 20.692093352649486 27.72754673182823 30.705578123850998 20.874781791671293 34-35 20.834734705438954 27.80939896428642 30.775674752434718 20.58019157783991 36-37 20.760498254079877 27.74816655653629 30.676750542568925 20.814584646814907 38-39 20.634674003432846 27.829738782604608 30.785847555505025 20.74973965845752 40-41 20.84420910463637 27.80671220820424 30.612308581111563 20.736770106047828 42-43 20.849349723573578 27.81169713649152 30.40926886380545 20.92968427612945 44-45 20.887684019052514 28.020485335162054 30.112608456324057 20.979222189461378 46-47 20.922804934314808 28.079470291628745 29.794632135044996 21.20309263901145 48-49 20.949607486556523 28.161198695028162 29.734994323667387 21.15419949474793 50-51 21.0587798880043 28.375337742783106 29.374296724000796 21.1915856452118 52-53 21.161897332592254 28.47942280520963 29.086751162189312 21.2719287000088 54-55 21.211330532555625 28.425891525639912 29.027267379351134 21.335510562453326 56-57 21.264533708843945 28.494597973672537 28.87045925086878 21.37040906661474 58-59 21.17038491351752 28.506184408040795 29.026404565045855 21.297026113395827 60-61 21.266048134338032 28.49828784971683 28.945206227384805 21.29045778856033 62-63 21.211273963611898 28.454987531269644 28.970606171347978 21.363132333770476 64-65 21.127119539723914 28.406184968394022 29.028324795458587 21.438370696423473 66-67 21.22975778260534 28.448218427562683 28.86286110222791 21.45916268760407 68-69 21.271581833899205 28.470101080902598 28.877282513820866 21.38103457137732 70-71 21.27698109814814 28.21381167234897 28.952685037749287 21.556522191753597 72-73 21.27723265817294 28.26942833037845 28.928873084161218 21.524465927287398 74-75 21.242842498076197 28.392968126369816 28.802206461780933 21.561982913773054 76-77 21.28390120505104 28.407776659280305 28.712092206116708 21.596229929551942 78-79 21.33665123704393 28.351317568109618 28.71792570516317 21.59410548968328 80-81 21.284742955052376 28.4631069368742 28.622190813332548 21.62995929474088 82-83 21.448858973739323 28.384380321926734 28.704577932844437 21.462182771489502 84-85 21.559604874884826 28.346027963418692 28.555390350367592 21.538976811328887 86-87 21.3280986210635 28.50752805978528 28.565861589426977 21.59851172972424 88-89 21.469259936787857 28.367830601731747 28.53755864896042 21.62535081251998 90-91 21.484716973147883 28.433233514670263 28.513414518202296 21.568634993979554 92-93 21.501903280557993 28.432363785356763 28.52944799138196 21.536284942703283 94-95 21.425371157428557 28.520739359169433 28.48401330712491 21.5698761762771 96-97 21.37313216674089 28.650264854863877 28.634710288968783 21.34189268942644 98-99 22.429542148455724 30.544269699928243 28.836593619015133 18.189594532600896 100 28.131593746682565 41.68493723959499 30.18346901372245 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2344.0 1 2284.0 2 2637.0 3 3276.0 4 4288.5 5 5499.0 6 6036.0 7 6175.5 8 6017.0 9 5900.0 10 6328.5 11 7862.0 12 10450.0 13 16825.5 14 26869.0 15 34694.0 16 38825.5 17 38737.5 18 35762.5 19 31824.5 20 28121.0 21 26036.5 22 26661.0 23 30712.5 24 37749.5 25 48050.5 26 60750.0 27 74812.0 28 89852.5 29 105480.0 30 120045.5 31 134562.0 32 150306.5 33 165925.0 34 181144.5 35 195778.5 36 209324.0 37 220271.5 38 228121.0 39 233579.5 40 238459.0 41 242824.0 42 245392.0 43 248458.5 44 250493.0 45 249623.0 46 246340.0 47 240681.0 48 233660.0 49 224370.5 50 212719.0 51 198062.0 52 181959.0 53 165149.0 54 147775.5 55 131392.5 56 115402.0 57 100967.0 58 87306.0 59 74032.0 60 62491.0 61 50618.0 62 39980.5 63 30582.5 64 22428.0 65 17206.0 66 13491.0 67 10586.5 68 7466.0 69 5001.5 70 3526.5 71 2574.0 72 1820.0 73 1365.5 74 1055.0 75 724.5 76 440.5 77 258.0 78 168.0 79 121.5 80 96.5 81 82.5 82 63.0 83 41.5 84 23.0 85 14.0 86 10.5 87 8.0 88 4.0 89 2.5 90 2.5 91 1.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 1.115592902300464E-4 3 0.0 4 0.0 5 0.006693557413802785 6 3.718643007668214E-4 7 0.0 8 0.0 9 1.3015250526838748E-4 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.3961569198470036E-4 26-27 2.793375156987684E-5 28-29 6.522490432205374E-4 30-31 2.706991000281714E-4 32-33 0.0015831123689412463 34-35 3.1054372159171914E-4 36-37 0.001335565590715451 38-39 5.736994925723605E-4 40-41 7.7286695964765E-4 42-43 1.2691066445933227E-4 44-45 6.91898012651454E-5 46-47 4.7120435120123527E-4 48-49 0.0017082088484608275 50-51 0.0018475006876521416 52-53 0.0019464938152252025 54-55 0.0016420055095111316 56-57 0.003381284600470632 58-59 4.6787061745320614E-4 60-61 3.309034723686776E-5 62-63 0.002179898164100945 64-65 0.002593975542775223 66-67 0.0036986453998385004 68-69 9.790160725301727E-4 70-71 0.005488783245583777 72-73 9.96220842236307E-4 74-75 0.00429656838073779 76-77 2.5928550791561614E-4 78-79 0.0011406626297237378 80-81 0.0 82-83 1.2923177525043503E-5 84-85 0.0011146636096033646 86-87 0.0 88-89 1.3515529884458438E-5 90-91 0.0037643536591028806 92-93 5.446293748227336E-4 94-95 1.4196384549961121E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1060.0 20-21 3051.0 22-23 1869.0 24-25 1913.0 26-27 3028.0 28-29 6630.0 30-31 17991.0 32-33 22748.0 34-35 30655.0 36-37 46433.0 38-39 54591.0 40-41 52564.0 42-43 60196.0 44-45 70241.0 46-47 71142.0 48-49 66122.0 50-51 76098.0 52-53 57190.0 54-55 61161.0 56-57 62787.0 58-59 62061.0 60-61 61475.0 62-63 58392.0 64-65 60353.0 66-67 62938.0 68-69 63111.0 70-71 62186.0 72-73 58131.0 74-75 57795.0 76-77 60303.0 78-79 60844.0 80-81 60012.0 82-83 56466.0 84-85 55852.0 86-87 56868.0 88-89 59192.0 90-91 59880.0 92-93 58338.0 94-95 60583.0 96-97 148355.0 98-99 1048079.0 100-101 2279622.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.68911300579101 #Duplication Level Percentage of deduplicated Percentage of total 1 92.47005065704748 82.93556823031153 2 5.645727033432181 10.127204998026965 3 1.1649445635045874 3.1344853380493447 4 0.375379925338533 1.3466997017517233 5 0.15286601894120155 0.6855208823781409 6 0.06606904177954209 0.35554042526098073 7 0.04164001719802397 0.26142593456256574 8 0.022678054823453548 0.16271796974497996 9 0.013061557333667935 0.10543315425578657 >10 0.04536437543222146 0.6447289170334161 >50 0.0015343313479309045 0.09547202433989775 >100 6.564048648662036E-4 0.1310793904724712 >500 2.8018956326309614E-5 0.014123033812231452 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 3.718643007668214E-5 0.0 6 0.0 0.0 0.0 3.718643007668214E-5 0.0 7 0.0 0.0 0.0 5.5779645115023205E-5 0.0 8 0.0 0.0 0.0 5.5779645115023205E-5 0.0 9 0.0 0.0 0.0 5.5779645115023205E-5 0.0 10-11 0.0 0.0 0.0 6.507625263419374E-5 0.0 12-13 0.0 0.0 0.0 7.437286015336428E-5 0.0 14-15 0.0 1.859321503834107E-5 0.0 7.437286015336428E-5 0.0 16-17 0.0 1.859321503834107E-5 0.0 8.366946767253481E-5 0.0 18-19 0.0 1.859321503834107E-5 0.0 1.0226268271087587E-4 0.0 20-21 0.0 1.859321503834107E-5 0.0 1.1155929023004641E-4 0.0 22-23 0.0 2.7889822557511603E-5 0.0 1.1155929023004641E-4 0.0 24-25 0.0 3.718643007668214E-5 0.0 1.5804232782589908E-4 0.0 26-27 0.0 3.718643007668214E-5 0.0 2.0452536542175175E-4 0.0 28-29 0.0 3.718643007668214E-5 0.0 6.972455639377901E-4 0.0 30-31 0.0 3.718643007668214E-5 0.0 0.002138219729409223 0.0 32-33 0.0 3.718643007668214E-5 0.0 0.005280473070888863 0.0 34-35 0.0 3.718643007668214E-5 0.0 0.009315200734208877 0.0 36-37 0.0 4.648303759585267E-5 0.0 0.015014021143460413 0.0 38-39 0.0 5.5779645115023205E-5 0.0 0.02402243382953666 0.0 40-41 0.0 6.507625263419374E-5 0.0 0.03335622777878388 0.0 42-43 0.0 7.437286015336428E-5 0.0 0.04211363206184252 0.0 44-45 0.0 7.437286015336428E-5 0.0 0.0524049765855643 0.0 46-47 0.0 7.437286015336428E-5 0.0 0.06356090560856895 0.0 48-49 0.0 7.437286015336428E-5 0.0 0.07427989407817256 0.0 50-51 9.296607519170535E-6 7.437286015336428E-5 0.0 0.08519411130567878 0.0 52-53 1.859321503834107E-5 7.437286015336428E-5 0.0 0.09551334565195807 0.0 54-55 1.859321503834107E-5 7.437286015336428E-5 0.0 0.10557227498770058 0.0 56-57 1.859321503834107E-5 7.437286015336428E-5 0.0 0.11417163694293334 0.0 58-59 1.859321503834107E-5 7.437286015336428E-5 0.0 0.12301271069366451 0.0 60-61 1.859321503834107E-5 7.437286015336428E-5 0.0 0.13168644550905062 0.0 62-63 1.859321503834107E-5 7.437286015336428E-5 0.0 0.14008128209886161 0.0 64-65 1.859321503834107E-5 7.437286015336428E-5 0.0 0.1476952036570623 0.0 66-67 1.859321503834107E-5 9.296607519170534E-5 0.0 0.15575536237618315 0.0 68-69 1.859321503834107E-5 9.296607519170534E-5 0.0 0.16328561446671125 0.0 70-71 3.718643007668214E-5 1.2085589774921695E-4 0.0 0.17041611243391508 0.0 72-73 3.718643007668214E-5 1.3015250526838748E-4 0.0 0.17615211927324329 0.0 74-75 3.718643007668214E-5 1.3015250526838748E-4 0.0 0.18076323660275187 0.0 76-77 3.718643007668214E-5 1.3015250526838748E-4 0.0 0.18537435393226045 0.0 78-79 3.718643007668214E-5 1.3015250526838748E-4 0.0 0.18796810743010903 0.0 80-81 3.718643007668214E-5 1.4874572030672856E-4 0.0 0.18885128514443023 0.0 82-83 3.718643007668214E-5 1.6733893534506963E-4 0.0 0.18925103926775455 0.0 84-85 3.718643007668214E-5 1.6733893534506963E-4 0.0 0.1895578273158872 0.0 86-87 3.718643007668214E-5 1.6733893534506963E-4 0.0 0.18969727642867476 0.0 88 3.718643007668214E-5 1.6733893534506963E-4 0.0 0.18970657303619393 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10495 0.0 50.357807 1 GTATCAA 20125 0.0 34.546722 1 ATCAACG 26770 0.0 28.731092 3 TCAACGC 27385 0.0 28.100605 4 TGGTATC 4280 0.0 28.01704 2 CAACGCA 27655 0.0 27.840858 5 TATCAAC 27860 0.0 27.75219 2 AACGCAG 28670 0.0 26.896458 6 GTGGTAT 4250 0.0 26.029823 1 ACGCAGA 32355 0.0 23.807968 7 CGCAGAG 32695 0.0 23.535688 8 TACATGG 32060 0.0 21.106688 2 GCAGAGT 36430 0.0 21.05619 9 ACATGGG 32875 0.0 20.116558 3 GTACATG 31740 0.0 19.831192 1 TTATCAA 4280 0.0 19.810028 1 GAGTACT 18275 0.0 19.26391 12-13 CATGGGG 20265 0.0 18.966879 4 CAGAGTA 36570 0.0 18.403313 10-11 AGAGTAC 34940 0.0 18.100594 10-11 >>END_MODULE