##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140076_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 33897913 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.116063398947304 31.0 31.0 34.0 28.0 34.0 2 31.166601879000634 31.0 31.0 34.0 28.0 34.0 3 31.169397390334915 31.0 31.0 34.0 27.0 34.0 4 34.867875848286 37.0 35.0 37.0 32.0 37.0 5 34.60269447856569 37.0 35.0 37.0 30.0 37.0 6 34.66792221102225 37.0 35.0 37.0 30.0 37.0 7 34.518664998638705 37.0 35.0 37.0 30.0 37.0 8 34.504510734923414 37.0 35.0 37.0 30.0 37.0 9 35.90702675412495 39.0 35.0 39.0 30.0 39.0 10-11 35.84938805819698 38.0 35.0 39.0 30.0 39.0 12-13 35.8062875286747 38.0 35.0 39.0 30.0 39.0 14-15 36.81574157677495 39.0 36.0 41.0 30.0 41.0 16-17 36.868331215553006 39.0 36.0 41.0 30.0 41.0 18-19 36.976930703668984 39.0 36.0 41.0 30.0 41.0 20-21 37.05585003118731 39.0 36.0 41.0 30.0 41.0 22-23 37.030523003179184 39.0 36.0 41.0 30.0 41.0 24-25 37.000513029188596 39.0 36.0 41.0 30.0 41.0 26-27 36.91005677117124 39.0 36.0 41.0 30.0 41.0 28-29 36.869631660641616 39.0 35.5 41.0 30.0 41.0 30-31 36.75878757993651 39.0 35.0 41.0 30.0 41.0 32-33 36.640852260287936 39.0 35.0 41.0 30.0 41.0 34-35 36.58985519467869 39.0 35.0 41.0 30.0 41.0 36-37 36.58109766383508 39.0 35.0 41.0 30.0 41.0 38-39 36.54215948786964 39.0 35.0 41.0 30.0 41.0 40-41 36.53181765798078 39.0 35.0 41.0 30.0 41.0 42-43 36.50886571589764 39.0 35.0 41.0 30.0 41.0 44-45 36.490063255938715 39.0 35.0 41.0 30.0 41.0 46-47 36.46522822929781 39.0 35.0 41.0 29.5 41.0 48-49 36.423072235886764 39.0 35.0 40.0 29.0 41.0 50-51 36.38936948118557 39.0 35.0 40.0 29.0 41.0 52-53 36.34147301895587 39.0 35.0 40.0 29.0 41.0 54-55 36.268145883971926 38.0 34.0 40.0 29.0 41.0 56-57 36.18436967816932 38.0 34.0 40.0 29.0 41.0 58-59 36.06000887231036 38.0 34.0 40.0 28.0 41.0 60-61 35.915116688672555 38.0 34.0 40.0 28.0 41.0 62-63 35.76948604388957 38.0 34.0 40.0 28.0 41.0 64-65 35.598491120644475 37.5 34.0 40.0 28.0 41.0 66-67 35.39910590760378 37.0 33.5 40.0 28.0 41.0 68-69 35.17168663455483 36.5 33.0 39.5 28.0 41.0 70-71 34.958592613833616 36.0 33.0 39.0 28.0 41.0 72-73 34.68425241030288 36.0 33.0 39.0 28.0 40.0 74-75 34.41574044492597 35.0 33.0 38.5 28.0 40.0 76-77 34.13271304743242 35.0 32.0 37.5 28.0 39.5 78-79 33.8571694343685 35.0 32.0 37.0 27.5 39.0 80-81 33.60016463495919 35.0 32.0 37.0 27.0 39.0 82-83 33.4745818086289 35.0 32.0 36.0 27.5 39.0 84-85 33.428988668445115 35.0 32.0 36.0 28.0 37.0 86-87 33.259454268528536 35.0 32.0 36.0 28.0 37.0 88-89 33.11347176503644 35.0 32.0 35.0 28.0 37.0 90-91 33.02586639997919 35.0 32.0 35.0 28.0 36.0 92-93 32.96706417515013 35.0 32.0 35.0 28.5 36.0 94-95 32.93988059836311 34.0 32.0 35.0 29.0 36.0 96-97 32.989884707283714 34.0 32.0 35.0 29.0 36.0 98-99 33.09148344944111 34.0 32.0 35.0 29.0 35.0 100 32.70223466679272 34.0 32.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 6.0 13 15.0 14 61.0 15 98.0 16 204.0 17 719.0 18 4504.0 19 21985.0 20 69576.0 21 155345.0 22 256614.0 23 350277.0 24 432370.0 25 509128.0 26 582798.0 27 654930.0 28 741047.0 29 841932.0 30 966480.0 31 1134850.0 32 1356286.0 33 1665217.0 34 2117410.0 35 2711754.0 36 3710585.0 37 5373499.0 38 6376153.0 39 3711399.0 40 152670.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.76930930821611 21.586246327318147 14.772561366831049 22.871882997634692 2 14.197107060838821 23.23337722885772 41.00962498782742 21.55989072247604 3 16.689503963179263 29.513266090040418 31.87226272590865 21.924967220871665 4 11.226851380595349 20.166207956240438 40.276345076048806 28.330595587115415 5 11.196396531087235 40.43754721171236 35.88116710511966 12.484889152080745 6 26.082599300839732 40.89523551708664 20.134822872984152 12.887342309089473 7 23.812342491498427 35.09324007639093 24.602489027824166 16.491928404286476 8 24.316978460661396 36.50090412632262 22.02823916350179 17.1538782495142 9 26.37348267595459 15.654385586216721 21.786025223223795 36.186106514604894 10-11 23.081487266488757 27.830581323432078 29.61056361780839 19.477367792270776 12-13 24.64832051744778 26.15563008656448 29.78843585267381 19.40761354331393 14-15 21.799988945416153 26.691803085084466 28.514703075928367 22.99350489357101 16-17 19.811045077549082 29.772944661684107 29.101941147179133 21.31406911358767 18-19 19.86747209153445 28.4663368798238 31.8230869652277 19.84310406341405 20-21 21.85347943488482 27.12952741580925 31.427136886417056 19.589856262888866 22-23 21.260498329731 27.245794329845076 31.233448962372435 20.26025837805149 24-25 20.37166974621046 27.565810466354822 31.658366194083992 20.40415359335072 26-27 20.309035672602004 27.781495958707858 31.452602091831633 20.456866276858506 28-29 20.194214265445414 27.878925437962515 31.514143743303546 20.412716553288522 30-31 20.535609968086025 27.734052070474075 31.371974214339417 20.358363747100483 32-33 20.376791133260813 27.91088940828731 31.118228100229555 20.59409135822232 34-35 20.58642943600575 28.012633582986613 31.16552224979745 20.235414731210184 36-37 20.500475446842135 27.986254801153343 30.971568281889166 20.541701470115356 38-39 20.4550574602891 27.980789074074647 31.018063568236208 20.54608989740004 40-41 20.64036551598684 27.97631326981986 30.816060330007844 20.56726088418545 42-43 20.65543809003482 28.115778121628082 30.403941581742767 20.824842206594326 44-45 20.731026418575187 28.496843851443153 29.928868597700593 20.843261132281064 46-47 20.841140380016522 28.52382233658014 29.426636856319366 21.208400427083966 48-49 21.015185051711637 28.64483328361794 29.160664502803264 21.179317161867157 50-51 21.036920656417323 28.78801202286137 28.82056434916737 21.354502971553934 52-53 21.05310423466463 28.82787180401288 28.724518802786136 21.394505158536354 54-55 21.13875509915499 28.846162223572126 28.74254725588622 21.272535421386664 56-57 21.252473695232695 28.794541500976962 28.62331842764129 21.32966637614905 58-59 21.11902039553115 28.833028484935657 28.753998313821988 21.293952805711204 60-61 21.222593978342292 28.902345337232727 28.598353916423047 21.276706768001937 62-63 21.17485637231023 28.82167167151565 28.62410104911049 21.379370907063635 64-65 21.04953659375065 28.759354069138322 28.714086304078485 21.47702303303255 66-67 21.263477603218867 28.805296159140326 28.551969312030973 21.379256925609834 68-69 21.223981139630233 28.79541939061682 28.602679793215625 21.37791967653732 70-71 21.146188711265594 28.592472163599282 28.710955692089545 21.550383433045578 72-73 21.1883931199168 28.678848830331383 28.751535823445256 21.381222226306566 74-75 21.18660822337785 28.75431399109527 28.652324642257337 21.40675314326954 76-77 21.14427572623644 28.770348923758082 28.622308483587368 21.463066866418114 78-79 21.127510287610907 28.75008453788988 28.64841146801997 21.473993706479245 80-81 21.095457360428192 28.790529359312185 28.690552864013846 21.423460416245774 82-83 21.283940180218455 28.670864005390918 28.768050468194673 21.277145346195955 84-85 21.346762574985874 28.77347465933493 28.563809898019617 21.315952867659583 86-87 21.053882144736015 28.905265565802317 28.705115808275373 21.33573648118629 88-89 21.227900764095057 28.70843068291625 28.6092283114171 21.45444024157159 90-91 21.279578766371525 28.703489356764344 28.6622637231007 21.354668153763434 92-93 21.242609000510598 28.816650741971362 28.532859975668824 21.407880281849216 94-95 20.918108604559187 28.965575757519325 28.702592264200007 21.41372337372148 96-97 21.00407319050236 29.113195457132996 28.713911434458073 21.16881991790657 98-99 21.856211791653738 31.0762702148259 29.01966143754315 18.047856555977212 100 27.84491200969237 42.297197073237086 29.857890917070545 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 11968.0 1 11943.0 2 18695.0 3 26300.0 4 35518.5 5 61932.5 6 83028.5 7 90794.0 8 88486.5 9 75683.5 10 60718.0 11 47948.5 12 52639.5 13 84319.0 14 160717.0 15 267534.5 16 352032.0 17 390644.0 18 395534.5 19 371998.0 20 330826.5 21 291912.5 22 268143.0 23 275196.0 24 312852.5 25 372021.0 26 448852.0 27 529933.0 28 610726.0 29 703277.5 30 798235.0 31 888311.5 32 980857.5 33 1073558.0 34 1162970.5 35 1256022.0 36 1338046.5 37 1406431.5 38 1456725.5 39 1473693.5 40 1483740.5 41 1492433.0 42 1494490.0 43 1505687.5 44 1530229.5 45 1542789.5 46 1536491.5 47 1522620.5 48 1488242.0 49 1433385.5 50 1372777.0 51 1288680.0 52 1181459.5 53 1068585.5 54 945999.0 55 827215.0 56 724142.0 57 626687.5 58 536811.0 59 454070.0 60 371415.5 61 289638.0 62 219375.5 63 168364.0 64 128218.5 65 98264.0 66 76468.0 67 58972.0 68 43451.0 69 31252.5 70 22919.5 71 17037.0 72 12867.0 73 9770.0 74 7290.5 75 5433.0 76 4087.5 77 3052.5 78 2327.5 79 1782.5 80 1333.5 81 1003.0 82 782.0 83 557.5 84 401.0 85 296.5 86 231.5 87 178.0 88 107.0 89 67.0 90 53.5 91 45.5 92 38.0 93 22.0 94 8.0 95 5.5 96 4.0 97 2.5 98 3.5 99 4.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.02196300403508617 4 0.014959623030479782 5 0.07832635596179623 6 0.04756930021031088 7 0.009776413078881878 8 0.004879356437076229 9 0.0148121213244013 10-11 0.020608938373285694 12-13 0.0013673408153475409 14-15 0.007291009331459432 16-17 7.419335815747713E-4 18-19 0.009115605435650272 20-21 0.0020542164276352273 22-23 0.001377092450191964 24-25 0.011310271965883965 26-27 7.304989301754083E-4 28-29 0.0012757465033641673 30-31 0.004744358451079073 32-33 0.024077031952922347 34-35 3.7812819404885515E-4 36-37 8.993984563974906E-5 38-39 8.809165326657095E-4 40-41 0.003266346771525701 42-43 0.014126329612357916 44-45 9.407830744951144E-4 46-47 0.0016929626332321227 48-49 1.2105468479557304E-4 50-51 0.0011490906539688892 52-53 4.612350477206592E-4 54-55 3.4227620382776123E-4 56-57 7.351178412277434E-5 58-59 0.009428454234192694 60-61 0.006724973874852427 62-63 5.706044009532484E-4 64-65 0.010999641312032049 66-67 0.0011981152768202358 68-69 0.005187605843358631 70-71 0.0051577113956163415 72-73 0.024761373817353754 74-75 4.883254724464921E-4 76-77 0.006152529069097109 78-79 6.706126190558396E-5 80-81 8.667222249370347E-5 82-83 0.0 84-85 0.0 86-87 0.012749256826100699 88-89 1.7117827868785003E-4 90-91 1.6538500735739788E-4 92-93 2.5072869737187547E-5 94-95 1.8156826938995482E-4 96-97 3.6544432942900256E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 27276.0 20-21 53414.0 22-23 58375.0 24-25 65037.0 26-27 79121.0 28-29 120791.0 30-31 179183.0 32-33 199883.0 34-35 245452.0 36-37 306616.0 38-39 396828.0 40-41 390409.0 42-43 448051.0 44-45 535818.0 46-47 520605.0 48-49 466173.0 50-51 448273.0 52-53 346426.0 54-55 351422.0 56-57 372695.0 58-59 387058.0 60-61 385186.0 62-63 339570.0 64-65 336112.0 66-67 356885.0 68-69 373171.0 70-71 386546.0 72-73 348696.0 74-75 330997.0 76-77 346215.0 78-79 370221.0 80-81 385519.0 82-83 359127.0 84-85 342505.0 86-87 357649.0 88-89 398837.0 90-91 435313.0 92-93 450436.0 94-95 487407.0 96-97 1023575.0 98-99 6249823.0 100-101 1.3835217E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.65385464482179 #Duplication Level Percentage of deduplicated Percentage of total 1 88.71669946744774 72.44060482883317 2 7.194497794989996 11.74916954389208 3 1.9247962123411928 4.715010904302338 4 0.8868121553097871 2.896465233077059 5 0.439720265249305 1.795242731152462 6 0.2682597605623929 1.3142666097609799 7 0.1582604902311556 0.9045805345747112 8 0.10231598666169422 0.6683595762172405 9 0.07539653428861612 0.5540775886373385 >10 0.23041774064673642 2.726931414809215 >50 0.0022871589307941437 0.12119837749159573 >100 4.883552198813589E-4 0.07133184177360533 >500 3.466433714657234E-5 0.018686404642772964 >1k 1.3413783606139615E-5 0.024074410835463682 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.950034121569667E-6 2 2.950034121569667E-6 0.0 0.0 0.0 2.950034121569667E-6 3 2.950034121569667E-6 0.0 0.0 0.0 2.950034121569667E-6 4 5.900068243139334E-6 0.0 0.0 8.850102364709001E-6 2.950034121569667E-6 5 8.850102364709001E-6 0.0 0.0 1.1800136486278668E-5 2.950034121569667E-6 6 1.1800136486278668E-5 0.0 0.0 1.1800136486278668E-5 2.950034121569667E-6 7 1.4750170607848335E-5 0.0 0.0 1.1800136486278668E-5 5.900068243139334E-6 8 2.065023885098767E-5 0.0 0.0 1.1800136486278668E-5 5.900068243139334E-6 9 2.065023885098767E-5 0.0 0.0 2.950034121569667E-5 5.900068243139334E-6 10-11 2.8025324154911836E-5 0.0 0.0 3.687542651962084E-5 5.900068243139334E-6 12-13 3.5400409458836005E-5 0.0 0.0 4.130047770197534E-5 8.850102364709001E-6 14-15 4.2775494762760177E-5 0.0 0.0 6.1950716552963E-5 8.850102364709001E-6 16-17 5.1625597127469176E-5 0.0 0.0 8.407597246473553E-5 8.850102364709001E-6 18-19 5.9000682431393334E-5 0.0 0.0 8.997604070787485E-5 1.4750170607848337E-5 20-21 7.227583597845685E-5 0.0 0.0 1.0325119425493835E-4 2.065023885098767E-5 22-23 7.375085303924168E-5 0.0 0.0 1.3570156959220468E-4 2.065023885098767E-5 24-25 8.407597246473553E-5 0.0 0.0 2.0945242263144636E-4 2.065023885098767E-5 26-27 8.555098952552035E-5 0.0 0.0 2.817282586099032E-4 2.065023885098767E-5 28-29 8.850102364709001E-5 0.0 0.0 8.127344004924433E-4 2.2125255911772502E-5 30-31 9.292607482944452E-5 0.0 0.0 0.0022980765807027706 2.507529003334217E-5 32-33 1.0325119425493835E-4 0.0 0.0 0.00474807991866638 2.6550307094127005E-5 34-35 1.1062627955886252E-4 0.0 0.0 0.007687788920810552 2.6550307094127005E-5 36-37 1.1210129661964734E-4 1.4750170607848335E-6 0.0 0.012049414369551304 2.6550307094127005E-5 38-39 1.1505133074121701E-4 2.950034121569667E-6 0.0 0.019215047250844025 3.09753582764815E-5 40-41 1.5930184256476203E-4 2.950034121569667E-6 0.0 0.027374841631105727 3.2450375337266336E-5 42-43 1.5930184256476203E-4 2.950034121569667E-6 0.0 0.03430594679973366 3.5400409458836005E-5 44-45 1.7257699611182553E-4 2.950034121569667E-6 0.0 0.0419362100551736 3.8350443580405673E-5 46-47 1.976522861451677E-4 2.950034121569667E-6 0.0 0.05000307836060586 3.8350443580405673E-5 48-49 2.0945242263144636E-4 2.950034121569667E-6 0.0 0.058139272467895 3.8350443580405673E-5 50-51 2.3010266148243403E-4 2.950034121569667E-6 0.0 0.06654096964612541 3.8350443580405673E-5 52-53 2.3600272972557336E-4 2.950034121569667E-6 0.0 0.07453998716676156 3.8350443580405673E-5 54-55 2.4485283209028236E-4 2.950034121569667E-6 0.0 0.08172922032102684 3.8350443580405673E-5 56-57 2.5222791739420655E-4 2.950034121569667E-6 0.0 0.0884449729987802 4.4250511823545004E-5 58-59 2.537029344549914E-4 2.950034121569667E-6 0.0 0.0945028680674235 5.015058006668434E-5 60-61 2.5665296857656103E-4 2.950034121569667E-6 0.0 0.10066991439856489 5.015058006668434E-5 62-63 2.5665296857656103E-4 2.950034121569667E-6 0.0 0.10677205997903175 5.310061418825401E-5 64-65 2.625530368197004E-4 2.950034121569667E-6 0.0 0.11193756972590024 5.605064830982367E-5 66-67 2.7730320742754873E-4 2.950034121569667E-6 0.0 0.11701162841500007 5.605064830982367E-5 68-69 2.832032756706881E-4 2.950034121569667E-6 0.0 0.1223379150214941 6.0475699492178176E-5 70-71 2.891033439138274E-4 2.950034121569667E-6 0.0 0.12733232278931156 6.490075067453267E-5 72-73 2.9057836097461223E-4 2.950034121569667E-6 0.0 0.13119096742032466 6.490075067453267E-5 74-75 3.038535145216757E-4 2.950034121569667E-6 0.0 0.1341837770366571 7.080081891767201E-5 76-77 3.068035486432454E-4 2.950034121569667E-6 0.0 0.136995159554513 7.375085303924168E-5 78-79 3.0975358276481504E-4 2.950034121569667E-6 0.0 0.13889645654586463 7.817590422159619E-5 80-81 3.127036168863847E-4 2.950034121569667E-6 0.0 0.1394643381142668 8.997604070787485E-5 82-83 3.156536510079544E-4 2.950034121569667E-6 0.0 0.13990684323250224 9.735112601179901E-5 84-85 3.1860368512952406E-4 2.950034121569667E-6 0.0 0.14008532029685722 9.735112601179901E-5 86-87 3.1860368512952406E-4 2.950034121569667E-6 0.0 0.14015317108165332 9.735112601179901E-5 88 3.1860368512952406E-4 2.950034121569667E-6 0.0 0.14016202118401802 9.735112601179901E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 83585 0.0 53.690636 1 GTATCAA 155620 0.0 36.10022 1 ATCAACG 208145 0.0 26.715166 3 TATCAAC 209860 0.0 26.58124 2 TCAACGC 212700 0.0 26.168371 4 CAACGCA 212690 0.0 26.114214 5 AACGCAG 219865 0.0 25.36184 6 TGCGCGA 2565 0.0 24.984917 94 ACGCAGA 250120 0.0 22.223675 7 CGCAGAG 251345 0.0 22.091333 8 TGGTATC 25165 0.0 21.413244 2 GTGGTAT 27475 0.0 20.755672 1 GCAGAGT 275280 0.0 19.757662 9 TACATGG 225305 0.0 19.72852 2 GTACATG 228750 0.0 19.700209 1 ACATGGG 231220 0.0 18.831938 3 GAGTACT 141345 0.0 18.674316 12-13 AGAGTAC 264860 0.0 17.967817 10-11 CAGAGTA 272835 0.0 17.91081 10-11 AGTACTT 148720 0.0 17.443731 12-13 >>END_MODULE