##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140075_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 17498158 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.36060452763085 33.0 31.0 34.0 28.0 34.0 2 31.872104309493604 33.0 31.0 34.0 30.0 34.0 3 31.893832196508914 33.0 31.0 34.0 30.0 34.0 4 35.32951879849296 37.0 35.0 37.0 33.0 37.0 5 35.261864877434526 37.0 35.0 37.0 33.0 37.0 6 35.28132561153008 37.0 35.0 37.0 33.0 37.0 7 35.403778271975824 37.0 35.0 37.0 33.0 37.0 8 35.56527361337119 37.0 35.0 37.0 33.0 37.0 9 37.48983310128986 39.0 37.0 39.0 35.0 39.0 10-11 37.598094953765994 39.0 37.5 39.0 35.0 39.0 12-13 37.61612165120466 39.0 38.0 39.0 35.0 39.0 14-15 38.98265866041443 40.0 38.5 41.0 36.0 41.0 16-17 39.01244445272468 40.5 39.0 41.0 36.0 41.0 18-19 39.07315401426824 41.0 39.0 41.0 36.0 41.0 20-21 39.100937551168414 41.0 39.0 41.0 36.0 41.0 22-23 39.06953456155758 41.0 39.0 41.0 35.5 41.0 24-25 39.046332301521005 41.0 39.0 41.0 35.0 41.0 26-27 38.96200474921385 41.0 39.0 41.0 35.0 41.0 28-29 38.90545753942362 40.0 39.0 41.0 35.0 41.0 30-31 38.81307116197742 40.0 38.0 41.0 35.0 41.0 32-33 38.73126487730447 40.0 38.0 41.0 35.0 41.0 34-35 38.67905429383506 40.0 38.0 41.0 35.0 41.0 36-37 38.617583532848386 40.0 38.0 41.0 34.5 41.0 38-39 38.557296918955224 40.0 38.0 41.0 34.0 41.0 40-41 38.522483087733804 40.0 38.0 41.0 34.0 41.0 42-43 38.45886316563701 40.0 38.0 41.0 34.0 41.0 44-45 38.393144212105966 40.0 38.0 41.0 34.0 41.0 46-47 38.33634587593503 40.0 38.0 41.0 34.0 41.0 48-49 38.24197518414644 40.0 38.0 41.0 33.0 41.0 50-51 38.15888552650639 40.0 37.5 41.0 33.0 41.0 52-53 38.05013439336216 40.0 37.0 41.0 33.0 41.0 54-55 37.918655359525275 40.0 37.0 41.0 33.0 41.0 56-57 37.733362441110074 39.5 36.5 41.0 33.0 41.0 58-59 37.563000744018325 39.0 36.0 41.0 33.0 41.0 60-61 37.37451065432607 39.0 36.0 41.0 32.0 41.0 62-63 37.16598453456504 39.0 35.0 40.5 32.0 41.0 64-65 36.91414412704355 38.0 35.0 40.0 32.0 41.0 66-67 36.638203665032776 38.0 35.0 40.0 31.5 41.0 68-69 36.330628946678374 37.0 35.0 40.0 31.0 41.0 70-71 36.021094486649815 37.0 35.0 39.0 31.0 41.0 72-73 35.681041767648125 36.0 34.5 39.0 31.0 40.5 74-75 35.34381330845331 36.0 34.0 38.5 31.0 40.0 76-77 35.309687199981994 35.5 34.0 37.5 31.0 39.5 78-79 35.0602798183942 35.0 34.0 37.0 31.0 39.0 80-81 34.79309518911589 35.0 34.0 37.0 31.0 39.0 82-83 34.51977834319908 35.0 34.0 36.0 31.0 38.0 84-85 34.29221845768797 35.0 34.0 36.0 31.0 37.0 86-87 34.10876163236959 35.0 34.0 35.5 31.0 37.0 88-89 33.9490704737175 35.0 34.0 35.0 31.0 36.5 90-91 33.83887742083826 35.0 34.0 35.0 31.0 36.0 92-93 33.76075370214559 35.0 34.0 35.0 31.0 36.0 94-95 33.718115645398576 35.0 34.0 35.0 31.0 36.0 96-97 33.7167402897299 35.0 34.0 35.0 31.0 35.5 98-99 33.75105083826102 35.0 34.0 35.0 31.0 35.0 100 33.26821190467589 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 7.0 17 173.0 18 1917.0 19 7191.0 20 14458.0 21 22386.0 22 31340.0 23 43448.0 24 58707.0 25 78477.0 26 103754.0 27 131853.0 28 165316.0 29 202835.0 30 250416.0 31 311096.0 32 395754.0 33 523102.0 34 746772.0 35 1109722.0 36 1864252.0 37 3654873.0 38 5090180.0 39 2571469.0 40 118660.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.03816435992863 18.991804737390073 9.439142108557942 28.53088879412336 2 14.223739379636163 22.351769253387673 38.26243946681937 25.16205190015679 3 17.670654248292877 27.399043945082674 28.635979855708243 26.294321950916206 4 12.026774475347633 19.157456459131296 38.14371775589179 30.67205130962928 5 13.005580358801193 38.94888822012008 34.45571242413059 13.589818996948136 6 28.624244557611373 39.51261102916311 18.77127488023999 13.091869532985534 7 25.945838938451928 33.91773629921758 22.807597354759302 17.328827407571193 8 24.926749432711716 36.73576955928732 20.677387871340514 17.660093136660443 9 26.51122478148843 16.70518691167379 20.50907872702944 36.274509579808345 10-11 24.028506314778962 27.081436228887632 28.706167243432134 20.183890212901268 12-13 25.218280118398752 24.76062337532899 28.79768544780542 21.22341105846684 14-15 22.40985933502923 25.607113899979357 26.730116276660876 25.252910488330542 16-17 21.695015671999784 28.595544678429402 27.310589855370466 22.39884979420035 18-19 21.720946284746088 27.877825768860927 29.06438209096066 21.336845855432326 20-21 22.721557267915323 27.028354551082955 28.856388163336938 21.393700017664784 22-23 22.38036549638108 26.94819794117918 28.713682298560308 21.957754263879433 24-25 22.059635797505013 27.06971819095017 28.8754854459234 21.995160565621415 26-27 22.070599838598177 27.2211250818321 28.7006780823997 22.007596997170026 28-29 22.003825887031006 27.261753697308965 28.79211997390177 21.94230044175826 30-31 22.35526008238117 27.04392442811061 28.69485663647382 21.905958853034395 32-33 22.097519645859865 27.30464288519646 28.680468365533695 21.917369103409982 34-35 22.18781668568738 27.261171473549872 28.782357960389838 21.76865388037291 36-37 22.226385882019933 27.11240820135073 28.7297249440646 21.93148097256474 38-39 22.050222490261337 27.28712340682895 28.756487294760912 21.906166808148804 40-41 22.30122777129619 27.096712300624198 28.617689480758727 21.984370447320877 42-43 22.172753134848968 27.239426965740044 28.422681698811996 22.165138200598992 44-45 22.283975826713164 27.418562772342277 28.2416182213857 22.05584317955886 46-47 22.38516796989212 27.397503504839303 27.845439210717686 22.371889314550895 48-49 22.40376469694035 27.48590405090342 27.78402294299417 22.326308309162062 50-51 22.34435182208046 27.65640167098527 27.62961148433253 22.36963502260174 52-53 22.46770187268509 27.59845612796296 27.508646899378856 22.4251950999731 54-55 22.442040421607654 27.48850800996337 27.609173402781707 22.46027816564727 56-57 22.425386594891428 27.58929575167618 27.583891302478175 22.401426350954214 58-59 22.424609498721324 27.60480934723247 27.57678108479954 22.393800069246662 60-61 22.481782568557428 27.615160900903142 27.513126637279 22.389929893260433 62-63 22.452631675671704 27.693524669917462 27.490678461016977 22.363165193393858 64-65 22.41341244803821 27.579506895633184 27.52589713073284 22.481183525595767 66-67 22.458447830807067 27.704684528326595 27.3201999314717 22.516667709394632 68-69 22.40701097556717 27.631901614220173 27.45410236983263 22.506985040380027 70-71 22.462096496523316 27.38479478019771 27.466489061317567 22.686619661961412 72-73 22.519782633516357 27.396420597879363 27.454683600562994 22.629113168041282 74-75 22.355961354178056 27.56247990163116 27.47520563133124 22.606353112859544 76-77 22.488207605881254 27.517477291485264 27.34489146181251 22.64942364082097 78-79 22.49682641597626 27.552693867174906 27.314795542306396 22.63568417454244 80-81 22.506601524012524 27.62162149660641 27.283751740238603 22.588025239142468 82-83 22.553524889056842 27.53617420459723 27.399930364259383 22.510370542086545 84-85 22.671172441024385 27.497228662000907 27.31747305268808 22.514125844286635 86-87 22.42691252275794 27.60660302117418 27.455496631045563 22.510987825022315 88-89 22.495320270941395 27.552977849336415 27.374353038091147 22.577348841631046 90-91 22.600972675315827 27.538109919810168 27.389208830310423 22.471708574563586 92-93 22.61275110974231 27.540397939669113 27.37541286840033 22.471438082188243 94-95 22.400293230336064 27.59277782990695 27.48406979881681 22.52285914094017 96-97 22.48858542013152 27.713960769065366 27.50788302876964 22.28957078203347 98-99 23.4816567499624 29.69572550587983 27.71756892868753 19.105048815470234 100 22.522534600061718 30.625919762938924 21.453148184500584 25.398397452498774 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 7823.0 1 7107.5 2 4724.0 3 2975.5 4 3083.0 5 4351.0 6 6494.0 7 10168.5 8 16205.0 9 20514.0 10 20971.5 11 21020.0 12 24478.5 13 33061.0 14 52249.5 15 78850.0 16 100865.5 17 113784.0 18 114683.5 19 104780.0 20 89933.0 21 74885.0 22 65238.5 23 65886.5 24 77154.5 25 98328.0 26 128661.0 27 163540.5 28 198458.0 29 236734.0 30 273915.5 31 309261.0 32 350726.0 33 391049.5 34 431253.5 35 470213.0 36 510845.0 37 553166.0 38 583989.5 39 605520.0 40 629636.0 41 650508.5 42 668365.5 43 691435.0 44 709189.5 45 730776.0 46 749756.0 47 761007.0 48 764731.0 49 750467.5 50 734150.0 51 714336.0 52 683546.5 53 645559.5 54 604597.5 55 556854.5 56 505211.0 57 454423.5 58 402923.0 59 353700.5 60 297993.0 61 239944.5 62 187765.0 63 144444.5 64 108959.0 65 79281.5 66 57188.5 67 42434.5 68 31734.5 69 22869.5 70 16646.0 71 11875.5 72 8058.5 73 5367.0 74 3556.5 75 2247.0 76 1464.0 77 947.0 78 584.0 79 376.0 80 252.0 81 174.5 82 128.0 83 83.5 84 58.5 85 42.5 86 30.5 87 27.0 88 25.0 89 22.5 90 15.5 91 9.0 92 10.0 93 7.5 94 3.0 95 3.0 96 4.0 97 4.5 98 3.0 99 4.5 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0029888860301752903 3 0.0 4 0.0 5 0.0 6 0.007377919435862906 7 8.572330870483625E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.171551885632762E-4 16-17 4.11471881783214E-4 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.982927174175699E-4 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0010381729544088805 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0039960990751928575 52-53 0.0 54-55 0.0 56-57 8.846397661211814E-4 58-59 0.0034527969695742674 60-61 0.0037218222687450003 62-63 0.002443908939825283 64-65 0.002951794115254377 66-67 0.002897943380799096 68-69 0.0014484520282006742 70-71 0.0 72-73 0.004045415734889223 74-75 0.003126315188918593 76-77 0.006380496434457349 78-79 2.0506704256822682E-5 80-81 2.105662270826277E-4 82-83 0.003330991640396885 84-85 0.00203270771146246 86-87 8.895719852859101E-5 88-89 4.316344763865547E-5 90-91 3.4948912335240454E-4 92-93 0.0 94-95 4.040618088859477E-4 96-97 4.998712926816629E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 3645.0 20-21 9301.0 22-23 11692.0 24-25 10874.0 26-27 12823.0 28-29 18721.0 30-31 32024.0 32-33 38715.0 34-35 52367.0 36-37 81192.0 38-39 108751.0 40-41 114579.0 42-43 130681.0 44-45 159515.0 46-47 153530.0 48-49 137136.0 50-51 120688.0 52-53 107432.0 54-55 112609.0 56-57 121679.0 58-59 128304.0 60-61 129400.0 62-63 122243.0 64-65 123343.0 66-67 131028.0 68-69 137075.0 70-71 139252.0 72-73 129002.0 74-75 124740.0 76-77 131409.0 78-79 142143.0 80-81 150453.0 82-83 144111.0 84-85 139984.0 86-87 147629.0 88-89 161864.0 90-91 176704.0 92-93 186275.0 94-95 220765.0 96-97 594724.0 98-99 1112421.0 100-101 1.1487335E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.27947563417308 #Duplication Level Percentage of deduplicated Percentage of total 1 86.80440872830233 68.81808006714245 2 8.38180659836043 13.290104639701338 3 2.425360411791128 5.76843905012048 4 1.0335774001425526 3.2776589724253387 5 0.49942328136899095 1.979700793321584 6 0.2695729131536449 1.2822959519998467 7 0.16399263714261572 0.9100875196372253 8 0.10216719927011282 0.647980958811729 9 0.07023897925400628 0.5011658499903461 >10 0.24191879166720406 2.8819087886742096 >50 0.00549501179161017 0.299718269675818 >100 0.0019305319502639423 0.23712426185902272 >500 6.1445230190063E-5 0.03637484074675421 >1k 4.607057496932129E-5 0.06936003589393076 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.285954898795633E-5 0.0 5.714887246989083E-6 0.0 3 5.714887246989083E-6 2.285954898795633E-5 0.0 1.1429774493978165E-5 0.0 4 5.714887246989083E-6 7.429353421085807E-5 0.0 1.1429774493978165E-5 0.0 5 5.714887246989083E-6 7.429353421085807E-5 0.0 1.1429774493978165E-5 0.0 6 1.0858285769279257E-4 8.000842145784716E-5 0.0 1.1429774493978165E-5 0.0 7 1.0858285769279257E-4 8.000842145784716E-5 0.0 1.1429774493978165E-5 0.0 8 1.1429774493978166E-4 9.143819595182532E-5 0.0 1.1429774493978165E-5 5.714887246989083E-6 9 1.1429774493978166E-4 1.5430195566870525E-4 0.0 2.285954898795633E-5 5.714887246989083E-6 10-11 1.3429985030424346E-4 1.5430195566870525E-4 0.0 2.285954898795633E-5 5.714887246989083E-6 12-13 1.5144451204521068E-4 1.5430195566870525E-4 0.0 2.285954898795633E-5 5.714887246989083E-6 14-15 1.5430195566870525E-4 2.1145082813859607E-4 0.0 2.285954898795633E-5 1.1429774493978165E-5 16-17 2.6574225698499233E-4 2.1716571538558515E-4 0.0 2.8574436234945415E-5 1.1429774493978165E-5 18-19 2.685997006084869E-4 2.4288270799703604E-4 0.0 2.8574436234945415E-5 1.1429774493978165E-5 20-21 2.685997006084869E-4 2.628848133614978E-4 0.0 3.1431879858439956E-5 1.1429774493978165E-5 22-23 2.828869187259596E-4 2.971741368434323E-4 0.0 4.8576541599407206E-5 2.000210536446179E-5 24-25 3.1146135496090503E-4 3.2003368583138865E-4 0.0 1.0001052682230896E-4 3.42893234819345E-5 26-27 3.2003368583138865E-4 3.314634603253668E-4 0.0 1.5430195566870525E-4 3.42893234819345E-5 28-29 3.2003368583138865E-4 3.3432090394886133E-4 0.0 4.4861864888864303E-4 3.42893234819345E-5 30-31 3.400357911958504E-4 3.657527838073013E-4 0.0 0.001688749181485274 3.42893234819345E-5 32-33 3.514655656898286E-4 3.657527838073013E-4 0.0 0.004057569945362249 3.42893234819345E-5 34-35 3.886123327952577E-4 4.4290376164165396E-4 0.0 0.007143609058736353 3.42893234819345E-5 36-37 4.11471881783214E-4 5.114824086055229E-4 0.0 0.012692764575562752 4.000421072892358E-5 38-39 4.11471881783214E-4 5.343419575934794E-4 0.0 0.02782864344921334 4.000421072892358E-5 40-41 4.1718676903020307E-4 6.17207822674821E-4 0.0 0.04510474759686134 4.000421072892358E-5 42-43 4.1718676903020307E-4 6.400673716627773E-4 0.0 0.05693456419812874 4.000421072892358E-5 44-45 4.314739871476758E-4 7.200757931206244E-4 0.0 0.07093318050962849 4.000421072892358E-5 46-47 4.457612052651485E-4 7.743672219670207E-4 0.0 0.08493179682112825 4.571909797591266E-5 48-49 4.543335361356321E-4 7.800821092140099E-4 0.0 0.09776457613424225 5.714887246989083E-5 50-51 4.943377468645557E-4 8.743777487893297E-4 0.0 0.11136600778207625 5.714887246989083E-5 52-53 5.029100777350393E-4 8.743777487893297E-4 0.0 0.1427978876405162 5.714887246989083E-5 54-55 5.029100777350393E-4 8.772351924128243E-4 0.0 0.17811303338328527 6.0006316093385374E-5 56-57 5.057675213585339E-4 8.972372977772861E-4 0.0 0.2133710302535844 6.286375971687991E-5 58-59 5.086249649820284E-4 9.143819595182533E-4 0.0 0.23323312088049497 6.286375971687991E-5 60-61 5.143398522290174E-4 9.200968467652424E-4 0.0 0.2484975847172028 6.8578646963869E-5 62-63 5.48629175710952E-4 9.315266212592205E-4 0.0 0.259644472292455 7.143609058736354E-5 64-65 5.48629175710952E-4 9.315266212592205E-4 0.0 0.26244476704347963 7.715097783435261E-5 66-67 5.829184991928864E-4 9.34384064882715E-4 0.0 0.2645964220919711 8.000842145784716E-5 68-69 6.000631609338538E-4 9.515287266236823E-4 0.0 0.2666337793955227 8.000842145784716E-5 70-71 6.257801535453046E-4 9.658159447411551E-4 0.0 0.2682168031629386 8.000842145784716E-5 72-73 6.514971461567554E-4 9.77245719235133E-4 0.0 0.269594090989463 8.572330870483625E-5 74-75 6.514971461567554E-4 9.91532937352606E-4 0.0 0.2707284961079903 8.572330870483625E-5 76-77 6.629269206507337E-4 0.0010801136896809367 0.0 0.27174003115070744 8.572330870483625E-5 78-79 6.800715823917009E-4 0.0011515497802683003 0.0 0.2724429622820871 8.572330870483625E-5 80-81 6.800715823917009E-4 0.0011544072238917947 0.0 0.27265155566660215 8.572330870483625E-5 82-83 6.829290260151955E-4 0.0011772667728797512 0.0 0.27298587657055107 9.429563957531986E-5 84-85 6.8578646963869E-4 0.001197268878244213 5.714887246989083E-6 0.2731630380752077 1.028679704458035E-4 86-87 6.943588005091737E-4 0.0012172709836086747 5.714887246989083E-6 0.27322875927854806 1.028679704458035E-4 88 7.200757931206244E-4 0.001314424066807489 5.714887246989083E-6 0.27322875927854806 1.028679704458035E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 25130 0.0 50.014133 1 GTATCAA 45265 0.0 38.560005 1 ATCAACG 54765 0.0 31.168781 3 TCAACGC 55150 0.0 30.958939 4 CAACGCA 55430 0.0 30.787142 5 TATCAAC 56860 0.0 30.313723 2 AACGCAG 57560 0.0 29.699802 6 ACGCAGA 66360 0.0 25.688759 7 CGCAGAG 67470 0.0 25.29174 8 GTACATG 58680 0.0 21.498856 1 GCAGAGT 79420 0.0 21.475443 9 TACATGG 57880 0.0 21.242622 2 ACATGGG 58475 0.0 20.573368 3 GAGTACT 45025 0.0 19.746649 12-13 CAGAGTA 77175 0.0 18.816172 10-11 CATGGGG 40550 0.0 18.55683 4 AGAGTAC 71900 0.0 18.471266 10-11 GTACTTT 49025 0.0 18.163116 14-15 AGTACTT 48690 0.0 17.150803 12-13 GTACTAG 5445 0.0 16.470863 1 >>END_MODULE