##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140074_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 20474288 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.307628817177918 33.0 31.0 34.0 28.0 34.0 2 31.820707074160527 33.0 31.0 34.0 30.0 34.0 3 31.850907001015127 33.0 31.0 34.0 30.0 34.0 4 35.30975997797823 37.0 35.0 37.0 33.0 37.0 5 35.26226084150032 37.0 35.0 37.0 33.0 37.0 6 35.2820505406586 37.0 35.0 37.0 33.0 37.0 7 35.3992418197888 37.0 35.0 37.0 33.0 37.0 8 35.559096511683336 37.0 35.0 37.0 33.0 37.0 9 37.46934980107733 39.0 37.0 39.0 35.0 39.0 10-11 37.572281048308 39.0 37.5 39.0 35.0 39.0 12-13 37.58347225554315 39.0 37.0 39.0 35.0 39.0 14-15 38.93741162085831 40.0 38.0 41.0 35.0 41.0 16-17 38.96561968357581 40.0 38.0 41.0 35.5 41.0 18-19 39.02878082988771 40.5 39.0 41.0 36.0 41.0 20-21 39.05809069280808 41.0 39.0 41.0 35.5 41.0 22-23 39.0275497206205 41.0 39.0 41.0 35.0 41.0 24-25 39.00010822610987 41.0 39.0 41.0 35.0 41.0 26-27 38.91538246817842 40.5 39.0 41.0 35.0 41.0 28-29 38.85894004233072 40.0 38.5 41.0 35.0 41.0 30-31 38.76209275197169 40.0 38.0 41.0 35.0 41.0 32-33 38.67669187356976 40.0 38.0 41.0 35.0 41.0 34-35 38.62194312397278 40.0 38.0 41.0 34.0 41.0 36-37 38.5609019714373 40.0 38.0 41.0 34.0 41.0 38-39 38.49574970734184 40.0 38.0 41.0 34.0 41.0 40-41 38.45840391974656 40.0 38.0 41.0 34.0 41.0 42-43 38.39310749723274 40.0 38.0 41.0 34.0 41.0 44-45 38.32524672418256 40.0 38.0 41.0 34.0 41.0 46-47 38.2623122128755 40.0 38.0 41.0 33.0 41.0 48-49 38.164940838292125 40.0 38.0 41.0 33.0 41.0 50-51 38.07894765741689 40.0 37.0 41.0 33.0 41.0 52-53 37.96993991215974 40.0 37.0 41.0 33.0 41.0 54-55 37.835154113854855 40.0 37.0 41.0 33.0 41.0 56-57 37.645758856153876 39.5 36.0 41.0 33.0 41.0 58-59 37.47072112313266 39.0 36.0 41.0 32.5 41.0 60-61 37.277835963165444 39.0 35.5 41.0 32.0 41.0 62-63 37.06794802146082 39.0 35.0 40.5 32.0 41.0 64-65 36.814322107237786 38.0 35.0 40.0 32.0 41.0 66-67 36.536402946559804 37.5 35.0 40.0 31.0 41.0 68-69 36.22935945897436 37.0 35.0 39.5 31.0 41.0 70-71 35.921269075419374 36.5 35.0 39.0 31.0 41.0 72-73 35.58616381839598 36.0 34.5 39.0 31.0 40.5 74-75 35.25434786439931 35.5 34.0 38.5 31.0 40.0 76-77 35.22753264136636 35.0 34.0 37.5 31.0 39.5 78-79 34.98607615384672 35.0 34.0 37.0 31.0 39.0 80-81 34.72457723526598 35.0 34.0 37.0 31.0 39.0 82-83 34.45797044302617 35.0 34.0 36.0 31.0 38.0 84-85 34.23807669684204 35.0 34.0 36.0 31.0 37.0 86-87 34.06014746050789 35.0 34.0 35.5 30.5 37.0 88-89 33.90471905879165 35.0 34.0 35.0 30.0 36.5 90-91 33.79795877042487 35.0 34.0 35.0 30.0 36.0 92-93 33.72325638671684 35.0 34.0 35.0 30.0 36.0 94-95 33.683408006562004 35.0 34.0 35.0 30.0 36.0 96-97 33.68086928942476 35.0 34.0 35.0 30.5 35.5 98-99 33.7188176994964 35.0 34.0 35.0 31.0 35.0 100 33.23964924343523 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 0.0 15 1.0 16 4.0 17 213.0 18 2250.0 19 7887.0 20 16748.0 21 25926.0 22 37080.0 23 50958.0 24 69640.0 25 93914.0 26 125215.0 27 160170.0 28 200616.0 29 247616.0 30 305485.0 31 377500.0 32 479937.0 33 633518.0 34 895271.0 35 1331621.0 36 2215159.0 37 4288795.0 38 5807689.0 39 2959565.0 40 141509.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.18831502223667 18.81641012376108 9.326502587049669 28.66877226695258 2 14.341657191086313 22.111266758101134 38.071304230602415 25.47577182021014 3 17.85077459103828 27.08100032587214 28.500214512954003 26.568010570135574 4 12.105456365564459 18.879372020165 37.5264429219712 31.48872869229934 5 13.11370143860436 38.88837062368176 34.20248850656003 13.795439431153845 6 29.11078544105376 39.079044089183704 18.371498617449035 13.438671852313497 7 26.231292683135297 33.85337453951361 22.39107856077932 17.524254216571773 8 25.190521887745255 36.64990450461574 20.32773496201675 17.831838645622256 9 26.64865317905072 16.566773897094738 20.306952798553972 36.47762012530057 10-11 24.333844966916555 27.013330085031527 28.29361147992057 20.359213468131347 12-13 25.36722888727559 24.752675160181393 28.504895994429695 21.375199958113317 14-15 22.54224912949269 25.5230101510833 26.503348007362217 25.431392712061797 16-17 21.756737216674225 28.559139586427317 27.182682908668397 22.501440288230057 18-19 21.837924229648426 27.674168693924788 29.03871919746367 21.449187878963116 20-21 22.82050578612125 26.83053480400124 28.834161727526254 21.514797682351258 22-23 22.54355695471165 26.767968081784876 28.71862534926314 21.96984961424033 24-25 22.18274492354014 26.89400287823335 28.859142187056207 22.0641100111703 26-27 22.108114478761433 27.06297325647697 28.770951300056673 22.05796096470492 28-29 22.087327514928802 27.03334619506967 28.839006583984077 22.040319706017456 30-31 22.388483505604736 26.894448980929653 28.728707891361317 21.988359622104294 32-33 22.107258039076573 27.11958212225214 28.748968792798955 22.02419104587233 34-35 22.26410944033137 27.06270682392634 28.80425417969763 21.868929556044662 36-37 22.269524915577488 26.948588442040304 28.726572735971995 22.055313906410216 38-39 22.114432616539386 27.09687746293677 28.78257548940094 22.00611443112291 40-41 22.339636665831154 26.943082380183625 28.639999149609935 22.077281804375286 42-43 22.223233609278672 27.06503754774447 28.45105482983483 22.260674013142026 44-45 22.29587272666906 27.228000450807745 28.279102077198864 22.197024745324327 46-47 22.45684582360785 27.239266971875374 27.849553951743605 22.454333252773175 48-49 22.432172499687432 27.359065115492015 27.74842357288475 22.460338811935802 50-51 22.381984561553516 27.541590458235483 27.633406370883684 22.443018609327318 52-53 22.53150243252273 27.450160509020368 27.50701925693564 22.511317801521262 54-55 22.457299920026063 27.35747397562796 27.608822912526147 22.576403191819825 56-57 22.457432212721248 27.479684484575788 27.584836468318553 22.478046834384408 58-59 22.438247739344785 27.490844889923967 27.585238605436157 22.48566876529509 60-61 22.507376202468464 27.474155876230462 27.560974313964472 22.457493607336602 62-63 22.44969630041687 27.605916354467443 27.50610785741871 22.438279487696978 64-65 22.42951211180513 27.520239710951657 27.4732352280608 22.577012949182418 66-67 22.50497402428378 27.618840581289078 27.30008065094427 22.576104743482873 68-69 22.420155328925375 27.568705455115328 27.40669920114459 22.604440014814706 70-71 22.48615920711177 27.287619457035216 27.4563304627821 22.76989087307092 72-73 22.497125603934805 27.327601649763032 27.392357597589378 22.782915148712785 74-75 22.400201285431386 27.49613405183239 27.41887303569096 22.68479162704526 76-77 22.579371466680143 27.437021234693532 27.26418250722078 22.719424791405544 78-79 22.52178485415138 27.484114167171626 27.257632461793623 22.73646851688337 80-81 22.530951257447366 27.55412103626834 27.220359147368356 22.69456855891594 82-83 22.558503086358392 27.50821368114253 27.33771962642948 22.5955636060696 84-85 22.646287102688955 27.496052051601843 27.29505701188957 22.562603833819633 86-87 22.43234351057816 27.591819713483584 27.405799315179095 22.57003746075916 88-89 22.52035750418357 27.526871768779003 27.318493618345336 22.634277108692093 90-91 22.58640917838716 27.514570421575435 27.35926123592713 22.539759164110272 92-93 22.601203617336747 27.52079651726782 27.34656617595087 22.53143368944456 94-95 22.423390458325386 27.530003179331196 27.44677256480099 22.59983379754243 96-97 22.49613295474335 27.65663311250751 27.508502120303447 22.33873181244569 98-99 23.497363857808747 29.61475282800877 27.699034178462988 19.188849135719497 100 22.54729715688498 30.455613391050367 21.493992929031 25.50309652303366 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 12426.0 1 10919.5 2 7026.5 3 4458.5 4 4493.0 5 5994.5 6 8763.5 7 13887.0 8 22187.0 9 28106.0 10 28048.0 11 27091.0 12 30876.0 13 40990.0 14 64613.5 15 97550.5 16 124330.5 17 139615.0 18 140980.5 19 130087.5 20 112277.0 21 93119.5 22 81129.0 23 82706.0 24 97356.0 25 121890.5 26 154489.5 27 193133.5 28 230210.0 29 270367.5 30 312124.0 31 351356.5 32 396431.5 33 442855.0 34 490207.0 35 536041.5 36 580856.0 37 624344.5 38 661032.0 39 690191.0 40 719452.5 41 748155.0 42 772038.5 43 798313.5 44 822637.0 45 845131.0 46 861704.0 47 872646.0 48 877328.0 49 869038.5 50 856545.0 51 838215.5 52 807770.0 53 769616.0 54 727655.0 55 677095.0 56 624724.0 57 567709.0 58 506511.0 59 447385.0 60 379362.5 61 310001.5 62 247078.0 63 191819.0 64 144146.0 65 105036.0 66 76782.0 67 57871.0 68 44069.0 69 32227.5 70 23212.5 71 16677.5 72 11694.5 73 7952.5 74 5334.0 75 3488.0 76 2242.0 77 1360.5 78 844.5 79 558.5 80 374.5 81 240.5 82 159.0 83 114.5 84 90.0 85 77.0 86 62.5 87 42.0 88 28.0 89 22.5 90 16.0 91 8.5 92 6.5 93 5.5 94 5.0 95 7.5 96 8.0 97 7.5 98 6.0 99 5.0 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.002969578233929307 3 0.0 4 0.0 5 0.0 6 0.007936783931143295 7 6.349427144914636E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 9.768349453714826E-5 16-17 4.273652886000236E-4 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.234514978409604E-4 28-29 0.0 30-31 0.0 32-33 0.0 34-35 2.465436430324178E-6 36-37 9.801006162382625E-4 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.003938371254840336 52-53 0.0 54-55 0.0 56-57 8.920867803803166E-4 58-59 0.003351607290148265 60-61 0.0036942651247123697 62-63 0.0025223513161137336 64-65 0.0027644043331899425 66-67 0.003086714785151522 68-69 0.0014938502694144867 70-71 0.0 72-73 0.004173089049756892 74-75 0.0033115734276219122 76-77 0.006301227982490886 78-79 2.6552226961827515E-5 80-81 2.414195829133949E-4 82-83 0.0034068129572031097 84-85 0.0020631303901753853 86-87 1.0451609432577514E-4 88-89 7.14794039400877E-5 90-91 4.121342516942886E-4 92-93 0.0 94-95 4.884287983053656E-4 96-97 5.511237214672193E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 4584.0 20-21 11146.0 22-23 13714.0 24-25 13736.0 26-27 16371.0 28-29 23839.0 30-31 43027.0 32-33 51605.0 34-35 70233.0 36-37 107814.0 38-39 138642.0 40-41 144480.0 42-43 164508.0 44-45 198185.0 46-47 193047.0 48-49 171581.0 50-51 145849.0 52-53 127601.0 54-55 133606.0 56-57 148948.0 58-59 157361.0 60-61 159611.0 62-63 147200.0 64-65 149381.0 66-67 158265.0 68-69 165169.0 70-71 166780.0 72-73 153583.0 74-75 148305.0 76-77 156586.0 78-79 169550.0 80-81 177548.0 82-83 170034.0 84-85 164806.0 86-87 172776.0 88-89 190315.0 90-91 207894.0 92-93 218879.0 94-95 260236.0 96-97 694413.0 98-99 1281732.0 100-101 1.3281348E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.82834352742289 #Duplication Level Percentage of deduplicated Percentage of total 1 87.13053948118178 69.55486637433462 2 8.33545834862873 13.308116650257187 3 2.3134994562517965 5.540484880325234 4 0.9391970889126959 2.998981914147129 5 0.46780200830242263 1.8671929710792063 6 0.2574179216656774 1.232954776850576 7 0.1531526180730416 0.8558143865361273 8 0.1010554235781267 0.6453669654963142 9 0.0685658691880708 0.49261497838214907 >10 0.22478264939508324 2.7608555858688546 >50 0.0061250478443588335 0.3347272257081413 >100 0.0023086057113969206 0.31404428456692735 >500 5.458025247258095E-5 0.03084374181642876 >1k 4.090101433608151E-5 0.0631352646310095 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 9.768349453714825E-6 0.0 2 0.0 9.768349453714825E-6 0.0 9.768349453714825E-6 0.0 3 0.0 9.768349453714825E-6 0.0 1.953669890742965E-5 0.0 4 0.0 6.837844617600378E-5 0.0 1.953669890742965E-5 4.884174726857412E-6 5 9.768349453714825E-6 7.32626209028612E-5 0.0 1.953669890742965E-5 4.884174726857412E-6 6 9.768349453714825E-6 7.32626209028612E-5 0.0 2.442087363428706E-5 1.4652524180572238E-5 7 9.768349453714825E-6 7.32626209028612E-5 0.0 2.442087363428706E-5 1.4652524180572238E-5 8 9.768349453714825E-6 1.1233601871772049E-4 0.0 2.9305048361144477E-5 1.953669890742965E-5 9 2.442087363428706E-5 2.5886126052344287E-4 0.0 6.837844617600378E-5 2.442087363428706E-5 10-11 3.418922308800189E-5 2.5886126052344287E-4 0.0 1.1233601871772049E-4 2.442087363428706E-5 12-13 3.90733978148593E-5 2.637454352503003E-4 0.0 1.3431480498857885E-4 2.686296099771577E-5 14-15 4.1515485178288006E-5 3.223555319725892E-4 0.0 1.3675689235200756E-4 5.128383463200283E-5 16-17 6.105218408571765E-5 3.3212388142630405E-4 0.0 1.5140941653257978E-4 6.837844617600378E-5 18-19 7.082053353943247E-5 3.565447550605911E-4 0.0 1.8071446489372427E-4 9.035723244686214E-5 20-21 8.303097035657601E-5 3.858498034217356E-4 0.0 2.0513533852801132E-4 9.279931981029084E-5 22-23 8.791514508343343E-5 4.32249463326881E-4 0.0 2.2467203743544098E-4 1.0745184399086308E-4 24-25 9.524140717371955E-5 4.688807737783116E-4 0.0 2.759558720674438E-4 1.3919897971543626E-4 26-27 1.0256766926400566E-4 4.786491232320264E-4 0.0 3.49218492970305E-4 1.5385150389600848E-4 28-29 1.0745184399086308E-4 4.8109121059545514E-4 0.0 8.083309172949018E-4 1.562935912594372E-4 30-31 1.172201934445779E-4 5.372592199543154E-4 0.0 0.0026716435755910046 1.562935912594372E-4 32-33 1.221043681714353E-4 5.39701307317744E-4 0.0 0.006542352046625504 1.611777659862946E-4 34-35 1.2698854289829273E-4 6.15406015584034E-4 0.0 0.011402105899848629 1.611777659862946E-4 36-37 1.3675689235200756E-4 6.935528112137526E-4 0.0 0.01952937264533936 1.7094611544000944E-4 38-39 1.4164106707886497E-4 7.228578595748971E-4 0.0 0.04306865274142866 1.7583029016686685E-4 40-41 1.4408315444229368E-4 7.765837815703286E-4 0.0 0.06899629427895124 1.880407269840104E-4 42-43 1.465252418057224E-4 8.058888299314731E-4 0.0 0.08438877093064237 1.9292490171086778E-4 44-45 1.465252418057224E-4 8.718251887440482E-4 0.0 0.10255057465246167 1.953669890742965E-4 46-47 1.465252418057224E-4 9.328773728297658E-4 0.0 0.12120079584696669 1.978090764377252E-4 48-49 1.538515038960085E-4 9.377615475566232E-4 0.0 0.13823923938160876 2.0513533852801132E-4 50-51 1.6606194071315202E-4 0.0010720763525452022 0.0 0.15593216232964974 2.0513533852801132E-4 52-53 1.6606194071315202E-4 0.0010867288767257744 0.0 0.20524034828463877 2.319982995257271E-4 54-55 1.6850402807658073E-4 0.0011038234882697752 0.0 0.26243159224877566 2.613033478868716E-4 56-57 1.7338820280343815E-4 0.0011282443619040623 0.0 0.3159767997793135 2.686296099771577E-4 58-59 1.7583029016686685E-4 0.0011331285366309196 0.0 0.33832922541677635 2.857242215211586E-4 60-61 1.7583029016686685E-4 0.001138012711357777 0.0 0.35303303343198067 2.979346583383022E-4 62-63 1.904828143474391E-4 0.0011575494102652067 0.0 0.36335329462983035 3.2723970669944663E-4 64-65 2.0269325116458261E-4 0.0011673177597189216 0.0 0.367236213537682 3.2723970669944663E-4 66-67 2.0513533852801132E-4 0.0011673177597189216 0.0 0.37033766448923644 3.3212388142630405E-4 68-69 2.0513533852801132E-4 0.0011941807207166374 0.0 0.3733536423830709 3.565447550605911E-4 70-71 2.0513533852801132E-4 0.0012259278564412106 0.0 0.3758054980959533 3.638710171508773E-4 72-73 2.295562121622984E-4 0.0012503487300754975 0.0 0.3778837144422311 3.90733978148593E-4 74-75 2.3444038688915582E-4 0.0013089588267977867 0.0 0.37965911195544383 4.005023276023078E-4 76-77 2.3444038688915582E-4 0.0013871056224275052 0.0 0.38122693204276503 4.005023276023078E-4 78-79 2.3444038688915582E-4 0.0014261790202423645 0.0 0.38219399863868286 4.005023276023078E-4 80-81 2.3444038688915582E-4 0.0014261790202423645 0.0 0.382531006694836 4.127127644194513E-4 82-83 2.3444038688915582E-4 0.001438389457059508 0.0 0.3829168564982577 4.3957572541716714E-4 84-85 2.393245616160132E-4 0.0014505998938766516 0.0 0.3831195497494223 4.3957572541716714E-4 86-87 2.393245616160132E-4 0.0014750207675109385 0.0 0.3832050228071423 4.3957572541716714E-4 88 2.393245616160132E-4 0.0015531675631406572 0.0 0.38321234906923257 4.3957572541716714E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 31300 0.0 52.962082 1 GTATCAA 57385 0.0 38.16863 1 ATCAACG 70095 0.0 30.6767 3 TCAACGC 70245 0.0 30.641445 4 CAACGCA 71165 0.0 30.245323 5 TATCAAC 72300 0.0 29.983107 2 AACGCAG 74055 0.0 29.151093 6 ACGCAGA 84675 0.0 25.43755 7 CGCAGAG 86115 0.0 25.002316 8 GTACATG 75560 0.0 21.995285 1 TACATGG 74930 0.0 21.709383 2 GCAGAGT 99790 0.0 21.461061 9 ACATGGG 76575 0.0 20.803844 3 GAGTACT 55960 0.0 20.27446 12-13 CAGAGTA 97110 0.0 19.186777 10-11 CATGGGG 51350 0.0 18.806105 4 GTACTTT 60925 0.0 18.60371 14-15 AGAGTAC 90010 0.0 18.488085 10-11 AGTACTT 60920 0.0 16.998224 12-13 GTGGTAT 12945 0.0 16.943083 1 >>END_MODULE