##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140072_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 18647352 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.56444673753142 33.0 31.0 34.0 28.0 34.0 2 32.05624868345919 33.0 31.0 34.0 30.0 34.0 3 32.08525993395738 33.0 31.0 34.0 30.0 34.0 4 35.394680381428955 37.0 35.0 37.0 33.0 37.0 5 35.385039441524995 37.0 35.0 37.0 33.0 37.0 6 35.45549770283738 37.0 35.0 37.0 33.0 37.0 7 35.539900678659365 37.0 35.0 37.0 33.0 37.0 8 35.71670883887428 37.0 35.0 37.0 35.0 37.0 9 37.66821262343308 39.0 38.0 39.0 35.0 39.0 10-11 37.79929951984603 39.0 38.0 39.0 35.0 39.0 12-13 37.82796396507129 39.0 38.0 39.0 35.0 39.0 14-15 39.24349382153562 41.0 39.0 41.0 36.0 41.0 16-17 39.272905611477704 41.0 39.0 41.0 36.0 41.0 18-19 39.311048399794245 41.0 39.0 41.0 36.0 41.0 20-21 39.327316306224716 41.0 39.0 41.0 36.0 41.0 22-23 39.28682967165682 41.0 39.0 41.0 36.0 41.0 24-25 39.26822646391231 41.0 39.0 41.0 36.0 41.0 26-27 39.19060713774036 41.0 39.0 41.0 36.0 41.0 28-29 39.128183555457184 41.0 39.0 41.0 36.0 41.0 30-31 39.04795547681144 41.0 39.0 41.0 35.0 41.0 32-33 38.97126302611507 41.0 39.0 41.0 35.0 41.0 34-35 38.900070281963664 40.0 38.0 41.0 35.0 41.0 36-37 38.84576654792389 40.0 38.0 41.0 35.0 41.0 38-39 38.801227884132174 40.0 38.0 41.0 35.0 41.0 40-41 38.75611111282204 40.0 38.0 41.0 35.0 41.0 42-43 38.68726859668587 40.0 38.0 41.0 35.0 41.0 44-45 38.61352637624592 40.0 38.0 41.0 34.5 41.0 46-47 38.54035718207185 40.0 38.0 41.0 34.0 41.0 48-49 38.45865049063016 40.0 38.0 41.0 34.0 41.0 50-51 38.33981354897105 40.0 38.0 41.0 34.0 41.0 52-53 38.22695070468512 40.0 37.5 41.0 34.0 41.0 54-55 38.08270640405455 40.0 37.0 41.0 33.0 41.0 56-57 37.913418552732466 40.0 37.0 41.0 33.0 41.0 58-59 37.71688324870067 39.0 36.0 41.0 33.0 41.0 60-61 37.50605863738986 39.0 36.0 41.0 33.0 41.0 62-63 37.273725930717696 39.0 35.0 41.0 33.0 41.0 64-65 37.272861473665735 39.0 35.0 41.0 33.0 41.0 66-67 37.05486345724577 38.0 35.0 40.0 33.0 41.0 68-69 36.76519258854478 37.0 35.0 40.0 33.0 41.0 70-71 36.45706872129057 37.0 35.0 39.5 32.0 41.0 72-73 36.13901576974136 36.5 35.0 39.0 32.0 41.0 74-75 35.796415393580254 36.0 35.0 39.0 32.0 40.5 76-77 35.459940040724575 35.5 35.0 37.5 32.0 39.5 78-79 35.155977681432496 35.0 35.0 37.0 31.5 39.0 80-81 34.863511408732975 35.0 34.5 37.0 31.0 39.0 82-83 34.61034620747997 35.0 34.0 36.0 31.0 38.0 84-85 34.39613334340888 35.0 34.0 36.0 31.0 37.0 86-87 34.202080866689826 35.0 34.0 35.5 31.0 37.0 88-89 34.064738567388346 35.0 34.0 35.0 31.0 36.0 90-91 33.95869732411623 35.0 34.0 35.0 31.0 36.0 92-93 33.88266069571765 35.0 34.0 35.0 31.0 36.0 94-95 33.82078184101244 35.0 34.0 35.0 31.0 36.0 96-97 33.8084292312262 35.0 34.0 35.0 31.0 35.5 98-99 33.85356911871586 35.0 34.0 35.0 31.0 35.0 100 33.256047509343325 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 2.0 17 185.0 18 1814.0 19 6674.0 20 13747.0 21 21703.0 22 30546.0 23 41773.0 24 56032.0 25 74378.0 26 97171.0 27 123845.0 28 154655.0 29 189375.0 30 232686.0 31 289888.0 32 367328.0 33 486154.0 34 697931.0 35 1065089.0 36 1865310.0 37 3955397.0 38 5801097.0 39 2923969.0 40 150603.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.47442467970787 18.7799318637842 10.023315911020504 27.722327545487424 2 14.612673138717721 21.717731297881052 38.5245643593482 25.145031204053026 3 18.080840646972288 26.772997045371376 28.561974912041133 26.584187395615206 4 12.298494793924304 18.563643396564668 37.3981135225295 31.739748286981524 5 13.331404909394106 38.61268881501245 34.22694546657348 13.82896080901996 6 29.69733729091167 38.48803209412033 18.32029536064347 13.494335254324536 7 26.516309878302195 33.34601007610658 22.39467192800654 17.743008117584683 8 25.230139914771815 36.54732318025637 20.35016017287602 17.872376732095795 9 26.606903757702433 16.374196186139457 20.23894330948437 36.77995674667373 10-11 24.524307794479345 26.706706131787506 28.30039353576851 20.46859253796464 12-13 25.481416878922005 24.4404352961214 28.454986531063497 21.623161293893094 14-15 22.666880530812094 25.338578903857233 26.22731635033221 25.767224214998464 16-17 22.053667693711894 28.33684366326681 26.895179984067436 22.71430865895386 18-19 22.160028405105454 27.497199066119414 28.66002100459089 21.682751524184237 20-21 23.040001660813807 26.660763517842902 28.463704043408395 21.8355307779349 22-23 22.792105336394275 26.6123807078077 28.339254841832535 22.25625911396549 24-25 22.46416221993198 26.747088002045587 28.43744467344196 22.351305104580472 26-27 22.404939175416274 26.879745490337314 28.382969519629185 22.33234581461722 28-29 22.379684081678185 26.81759212876929 28.48157467644672 22.321149113105804 30-31 22.627952388769124 26.684430229045997 28.381329380049696 22.306288002135183 32-33 22.38024874182862 26.909557740600277 28.392681946432397 22.31751157113871 34-35 22.548909856414596 26.869282536347278 28.387994835955404 22.193812771282722 36-37 22.52262154285896 26.802595414914805 28.358960172166835 22.3158228700594 38-39 22.373530839900816 26.870311875059986 28.37852637459096 22.377630910448236 40-41 22.68051103580411 26.672801176965017 28.347680623597306 22.299007163633565 42-43 22.416547941453857 26.783437413880325 28.19255788832325 22.60745675634257 44-45 22.505811690895968 26.930859940606044 28.000154171496376 22.563174197001608 46-47 22.66437368815325 26.967285956597713 27.726651751169896 22.641688604079143 48-49 22.604146554864236 27.212922888115017 27.497849606986353 22.685080950034394 50-51 22.57958804948931 27.356097114957134 27.282605917997373 22.78170891755618 52-53 22.627286527129943 27.141661580636818 27.240404778934906 22.990647113298333 54-55 22.673003447696797 26.884754887060442 27.57495109835358 22.86729056688919 56-57 22.548318051089662 26.740242981355767 27.681895130165042 23.029543837389532 58-59 22.418653437444004 26.57640981978327 27.65142334865869 23.353513394114035 60-61 22.622769427899335 26.808598522921606 27.868791667693106 22.69984038148595 62-63 22.198641337559284 27.064595463759268 27.850119837133157 22.88664336154829 64-65 22.084401796726503 27.284410638163198 27.50510081749602 23.126086747614274 66-67 22.106258281010575 27.796568327766778 27.135177911680188 22.961995479542463 68-69 22.198601610635233 27.796718616850402 26.993733372831375 23.01094639968299 70-71 22.27124832460387 27.277651400264396 26.95749761723799 23.493602657893742 72-73 22.399867760631683 26.881576663609184 26.946548223970357 23.772007351788776 74-75 22.440014400866524 26.977494632095528 27.171026345804822 23.411464621233126 76-77 22.80227550378991 26.863466657695728 26.58269181769306 23.7515660208213 78-79 22.943123948831882 26.91264782517011 26.222496598402756 23.92173162759525 80-81 22.804287920697885 27.282710985601575 26.366179650566934 23.546821443133602 82-83 22.78661225974771 27.033206941757033 26.45240842084251 23.727772377652744 84-85 22.798925173124612 27.38937291175505 26.40841899140625 23.403282923714087 86-87 23.1931051353379 27.328856408985157 26.50507202345251 22.972966432224435 88-89 22.934154541772976 27.42650060864894 26.755813560752628 22.883531288825452 90-91 22.978340983407907 27.059870936798596 26.615712535616364 23.346075544177133 92-93 22.948852948990098 26.734303300845873 26.821394822290866 23.495448927873163 94-95 22.292251715917512 27.101953036037855 27.407504344249233 23.1982909037954 96-97 22.452926197969116 27.010196750956517 27.5458720852026 22.991004965871767 98-99 23.607055965477734 28.932732616087204 27.787597411043762 19.6726140073913 100 22.681340103546006 29.94978589296175 21.48976553089626 25.879108472595984 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 11506.0 1 9886.5 2 5931.5 3 3462.0 4 3489.5 5 4927.0 6 7612.5 7 12607.5 8 20267.5 9 25301.0 10 25038.5 11 23836.0 12 26456.5 13 34214.5 14 53554.5 15 81195.5 16 103339.0 17 115307.5 18 116048.5 19 107109.5 20 92332.5 21 76520.5 22 66098.0 23 66815.5 24 78146.0 25 97628.0 26 124307.5 27 154550.0 28 184683.5 29 218279.5 30 254032.5 31 290005.0 32 330313.0 33 370002.5 34 408200.5 35 446080.0 36 487182.5 37 528348.0 38 563880.5 39 594982.5 40 623412.5 41 649425.5 42 672629.5 43 697709.5 44 722093.0 45 749817.0 46 771242.5 47 785304.5 48 798614.0 49 799022.5 50 794286.5 51 783363.0 52 760030.0 53 726485.5 54 686946.0 55 643020.0 56 598026.5 57 546049.0 58 486899.5 59 427856.5 60 361394.5 61 293723.5 62 232818.5 63 181218.0 64 136873.5 65 100536.0 66 74750.0 67 57415.0 68 43872.5 69 31847.0 70 23065.5 71 16843.5 72 11931.5 73 8366.0 74 5835.0 75 3915.5 76 2548.5 77 1536.0 78 961.0 79 654.0 80 455.0 81 314.0 82 219.5 83 150.0 84 101.0 85 70.5 86 50.0 87 44.5 88 34.5 89 23.0 90 14.0 91 7.0 92 5.0 93 2.0 94 1.0 95 2.5 96 4.5 97 5.5 98 7.0 99 11.0 100 17.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.008242457159600997 3 0.0 4 2.681345855432986E-5 5 0.0 6 0.010419709994212583 7 0.008891342856615782 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 3.75388419760618E-5 18-19 0.0 20-21 0.0 22-23 0.0 24-25 6.444830758341484E-5 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 1.7913985741547877E-4 50-51 0.014157612858427485 52-53 3.3082098289905794E-4 54-55 0.0 56-57 0.007925022764606254 58-59 0.023733290853198374 60-61 0.004679473241963492 62-63 0.0013371097692054708 64-65 0.0021246182889801783 66-67 0.0010338121830207462 68-69 0.0014997889926127727 70-71 3.0336256777726488E-5 72-73 0.005437218661820276 74-75 0.0018340389854936163 76-77 0.020118268010209866 78-79 1.3829847923534772E-4 80-81 3.238044046160794E-4 82-83 0.00390294714200522 84-85 0.0029891032774367783 86-87 0.003316049542434217 88-89 6.6096421989169184E-6 90-91 3.3437100917751454E-6 92-93 0.0 94-95 0.0018469026207204896 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 3804.0 20-21 9432.0 22-23 11828.0 24-25 11988.0 26-27 14084.0 28-29 21355.0 30-31 39793.0 32-33 47436.0 34-35 64861.0 36-37 98106.0 38-39 80323.0 40-41 128741.0 42-43 145106.0 44-45 176435.0 46-47 171228.0 48-49 152539.0 50-51 82731.0 52-53 25878.0 54-55 24262.0 56-57 24397.0 58-59 84005.0 60-61 144188.0 62-63 130847.0 64-65 135770.0 66-67 145360.0 68-69 150892.0 70-71 154850.0 72-73 139369.0 74-75 137427.0 76-77 144386.0 78-79 155458.0 80-81 160604.0 82-83 153323.0 84-85 148956.0 86-87 156438.0 88-89 171324.0 90-91 187102.0 92-93 194665.0 94-95 230689.0 96-97 674642.0 98-99 1268020.0 100-101 1.244471E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.30087245932887 #Duplication Level Percentage of deduplicated Percentage of total 1 86.80027752367742 69.7013801486317 2 8.827579661192843 14.177246969960242 3 2.37513923591576 5.7217725856925785 4 0.8917433900381343 2.8643108891960707 5 0.41123138237972173 1.6511119393873768 6 0.23101670072925534 1.1130505572740927 7 0.1288959846605577 0.7245322017322938 8 0.08388241422912304 0.5388664837274721 9 0.05359314380724846 0.38732185850042955 >10 0.18770296947320791 2.329329003772405 >50 0.005931427675489699 0.32649268841687623 >100 0.00291811136753866 0.4158079992557055 >500 7.339542301854299E-5 0.0347213234200875 >1k 1.465943073911083E-5 0.014055351032605983 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 5.362691710865972E-6 0.0 2 0.0 0.0 0.0 5.362691710865972E-6 0.0 3 0.0 0.0 0.0 1.0725383421731944E-5 0.0 4 0.0 3.75388419760618E-5 0.0 1.6088075132597917E-5 0.0 5 5.362691710865972E-6 3.75388419760618E-5 0.0 2.1450766843463888E-5 0.0 6 5.362691710865972E-6 3.75388419760618E-5 0.0 2.681345855432986E-5 5.362691710865972E-6 7 5.362691710865972E-6 3.75388419760618E-5 0.0 2.681345855432986E-5 5.362691710865972E-6 8 5.362691710865972E-6 4.826422539779374E-5 0.0 2.681345855432986E-5 5.362691710865972E-6 9 5.362691710865972E-6 1.0189114250645346E-4 0.0 8.044037566298958E-5 5.362691710865972E-6 10-11 1.6088075132597917E-5 1.0189114250645346E-4 0.0 1.0725383421731943E-4 5.362691710865972E-6 12-13 1.6088075132597917E-5 1.0189114250645346E-4 0.0 1.313859469162163E-4 5.362691710865972E-6 14-15 2.4132112698896875E-5 1.4747402204881422E-4 0.0 1.3942998448251525E-4 5.362691710865972E-6 16-17 4.290153368692777E-5 1.501553679042472E-4 0.0 1.5819940547054617E-4 1.0725383421731944E-5 18-19 4.826422539779374E-5 1.5819940547054617E-4 0.0 1.7160613474771107E-4 1.0725383421731944E-5 20-21 5.362691710865972E-5 1.7965017231401007E-4 0.0 2.118263225792059E-4 1.0725383421731944E-5 22-23 6.435230053039167E-5 1.9573824744660795E-4 0.0 2.6009054797699964E-4 2.681345855432986E-5 24-25 7.239633809669061E-5 2.440024728444017E-4 0.0 3.110361192302264E-4 4.826422539779374E-5 26-27 1.0725383421731943E-4 2.5740920212156666E-4 0.0 4.182899534475458E-4 6.167095467495869E-5 28-29 1.4479267619338121E-4 2.5740920212156666E-4 0.0 9.465150869678439E-4 6.435230053039167E-5 30-31 1.501553679042472E-4 2.7349727725416455E-4 0.0 0.003059415621049037 6.435230053039167E-5 32-33 1.5819940547054617E-4 2.7349727725416455E-4 0.0 0.007647198379694875 6.435230053039167E-5 34-35 1.6088075132597915E-4 3.110361192302264E-4 0.0 0.01346035619427359 6.971499224125763E-5 36-37 1.6356209718141213E-4 3.5125630706172114E-4 0.0 0.025255596612323294 7.239633809669061E-5 38-39 1.662434430368451E-4 3.539376529171541E-4 0.0 0.17147206745493945 7.77590298075566E-5 40-41 1.716061347477111E-4 4.182899534475458E-4 0.0 0.32299492174545746 8.044037566298958E-5 42-43 1.7428748060314408E-4 4.370593744355767E-4 0.0 0.34679454755828065 8.580306737385555E-5 44-45 1.7696882645857706E-4 4.799609081225045E-4 0.0 0.3775334964449644 9.38471049401545E-5 46-47 1.7696882645857706E-4 5.040930208214013E-4 0.0 0.4107902290898997 1.0725383421731943E-4 48-49 1.7696882645857706E-4 5.067743666768343E-4 0.0 0.4427572343783718 1.2334190934991734E-4 50-51 1.7696882645857706E-4 5.872147423398239E-4 0.0 0.4753704440180032 1.2334190934991734E-4 52-53 1.7696882645857706E-4 5.952587799061228E-4 0.0 0.9061796012645656 1.4479267619338124E-4 54-55 1.7696882645857706E-4 5.979401257615558E-4 0.0 1.4579952156209632 1.6088075132597915E-4 56-57 1.7696882645857706E-4 6.220722384604528E-4 0.0 2.054474007891308 1.689247888922781E-4 58-59 1.7696882645857706E-4 6.247535843158857E-4 0.0 2.6782837584660815 1.8233151816944305E-4 60-61 1.7696882645857706E-4 6.274349301713187E-4 0.0 2.8441759451958646 1.8233151816944305E-4 62-63 1.7696882645857706E-4 6.274349301713187E-4 0.0 2.8504958773771203 1.87694209880309E-4 64-65 1.7965017231401007E-4 6.327976218821847E-4 0.0 2.8553088931876225 1.87694209880309E-4 66-67 1.8233151816944305E-4 6.327976218821847E-4 0.0 2.8583817155379485 1.9305690159117497E-4 68-69 1.8233151816944305E-4 6.596110804365145E-4 5.362691710865972E-6 2.8610737867768035 1.9841959330204096E-4 70-71 1.87694209880309E-4 6.703364638582465E-4 5.362691710865972E-6 2.8632161821152944 2.091449767237729E-4 72-73 1.87694209880309E-4 6.756991555691125E-4 5.362691710865972E-6 2.865141388439495 2.3595843527810277E-4 74-75 1.87694209880309E-4 6.864245389908444E-4 5.362691710865972E-6 2.866664392885381 2.3595843527810277E-4 76-77 1.87694209880309E-4 7.132379975451743E-4 5.362691710865972E-6 2.867999703121387 2.3863978113353575E-4 78-79 1.87694209880309E-4 7.293260726777722E-4 5.362691710865972E-6 2.8688121509155833 2.4132112698896873E-4 80-81 1.87694209880309E-4 7.293260726777722E-4 5.362691710865972E-6 2.869080285501126 2.520465104107007E-4 82-83 1.87694209880309E-4 7.320074185332052E-4 5.362691710865972E-6 2.8693966843120675 2.681345855432986E-4 84-85 1.87694209880309E-4 7.346887643886382E-4 5.362691710865972E-6 2.869573653138526 2.681345855432986E-4 86-87 1.87694209880309E-4 7.480954936658031E-4 5.362691710865972E-6 2.869654093514189 2.681345855432986E-4 88 1.87694209880309E-4 8.044037566298958E-4 5.362691710865972E-6 2.8696621375517553 2.681345855432986E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 25465 0.0 52.680386 1 GTATCAA 46875 0.0 38.403625 1 ATCTCGT 16430 0.0 38.19259 94 TATCTCG 19385 0.0 32.10391 94 TCAACGC 58440 0.0 30.211514 4 ATCAACG 58360 0.0 30.179068 3 CAACGCA 59485 0.0 29.637217 5 TATCAAC 60135 0.0 29.584223 2 AACGCAG 61655 0.0 28.678007 6 TATGCCG 10170 0.0 26.452488 86-87 CTCGTAT 10110 0.0 26.015348 82-83 TCGTATG 10625 0.0 25.66808 84-85 TCTCGTA 10395 0.0 25.250973 82-83 ACGCAGA 71040 0.0 24.807783 7 CGCAGAG 71775 0.0 24.557444 8 CCGTCTT 11385 0.0 24.51958 90-91 CGTATGC 11070 0.0 24.442078 84-85 GCCGTCT 11585 0.0 24.290411 90-91 ATGCCGT 11425 0.0 24.235188 88-89 GTACATG 64675 0.0 24.014904 1 >>END_MODULE