##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140069_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 22576622 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.56273737497133 33.0 31.0 34.0 28.0 34.0 2 32.050810302799064 33.0 31.0 34.0 30.0 34.0 3 32.08064240079849 33.0 31.0 34.0 30.0 34.0 4 35.39510051592306 37.0 35.0 37.0 33.0 37.0 5 35.383876471865456 37.0 35.0 37.0 33.0 37.0 6 35.452667631145175 37.0 35.0 37.0 33.0 37.0 7 35.53752913079734 37.0 35.0 37.0 33.0 37.0 8 35.71166448195837 37.0 35.0 37.0 35.0 37.0 9 37.660108540595665 39.0 38.0 39.0 35.0 39.0 10-11 37.79134557862554 39.0 38.0 39.0 35.0 39.0 12-13 37.81773686072256 39.0 38.0 39.0 35.0 39.0 14-15 39.23046350778252 41.0 39.0 41.0 36.0 41.0 16-17 39.25985357774073 41.0 39.0 41.0 36.0 41.0 18-19 39.30117235873462 41.0 39.0 41.0 36.0 41.0 20-21 39.317081126285316 41.0 39.0 41.0 36.0 41.0 22-23 39.27874463741472 41.0 39.0 41.0 36.0 41.0 24-25 39.259628645954876 41.0 39.0 41.0 36.0 41.0 26-27 39.18135943261087 41.0 39.0 41.0 36.0 41.0 28-29 39.11925445712879 41.0 39.0 41.0 35.5 41.0 30-31 39.038176952859075 41.0 39.0 41.0 35.0 41.0 32-33 38.9595579323057 41.0 39.0 41.0 35.0 41.0 34-35 38.888889362826575 40.0 38.0 41.0 35.0 41.0 36-37 38.83699440142699 40.0 38.0 41.0 35.0 41.0 38-39 38.79500492694992 40.0 38.0 41.0 35.0 41.0 40-41 38.74820067276213 40.0 38.0 41.0 35.0 41.0 42-43 38.68664080663825 40.0 38.0 41.0 35.0 41.0 44-45 38.61205280946942 40.0 38.0 41.0 34.5 41.0 46-47 38.54028270197535 40.0 38.0 41.0 34.0 41.0 48-49 38.46250326538694 40.0 38.0 41.0 34.0 41.0 50-51 38.34901739399156 40.0 38.0 41.0 34.0 41.0 52-53 38.241140741279615 40.0 37.5 41.0 34.0 41.0 54-55 38.09899841193083 40.0 37.0 41.0 33.5 41.0 56-57 37.93734385167054 40.0 37.0 41.0 33.0 41.0 58-59 37.739981463383415 39.0 36.0 41.0 33.0 41.0 60-61 37.535401711952005 39.0 36.0 41.0 33.0 41.0 62-63 37.30130537908971 39.0 35.0 41.0 33.0 41.0 64-65 37.29149154424783 39.0 35.0 41.0 33.0 41.0 66-67 37.07013144138286 38.0 35.0 40.5 33.0 41.0 68-69 36.783715690084065 37.0 35.0 40.0 33.0 41.0 70-71 36.47751993810007 37.0 35.0 39.5 32.0 41.0 72-73 36.15629765742261 36.5 35.0 39.0 32.0 41.0 74-75 35.82024642361337 36.0 35.0 39.0 32.0 40.5 76-77 35.490805326889614 35.5 35.0 37.5 32.0 39.5 78-79 35.19569270172765 35.0 35.0 37.0 32.0 39.0 80-81 34.91130588863612 35.0 35.0 37.0 31.0 39.0 82-83 34.66242779662024 35.0 34.0 36.0 31.0 38.0 84-85 34.43427748046176 35.0 34.0 36.0 31.0 37.0 86-87 34.23945669595004 35.0 34.0 35.5 31.0 37.0 88-89 34.09747325640504 35.0 34.0 35.0 31.0 36.5 90-91 33.98280024813121 35.0 34.0 35.0 31.0 36.0 92-93 33.905631614640356 35.0 34.0 35.0 31.0 36.0 94-95 33.85345229881881 35.0 34.0 35.0 31.0 36.0 96-97 33.84859592197397 35.0 34.0 35.0 31.0 35.5 98-99 33.88511395826056 35.0 34.0 35.0 31.0 35.0 100 33.31264798637173 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 8.0 17 257.0 18 2237.0 19 8220.0 20 16578.0 21 26388.0 22 37373.0 23 50924.0 24 67743.0 25 89449.0 26 116213.0 27 148293.0 28 184659.0 29 228238.0 30 280537.0 31 350020.0 32 444523.0 33 588046.0 34 845692.0 35 1290164.0 36 2240599.0 37 4752757.0 38 6983233.0 39 3639428.0 40 185043.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.36686861302812 18.834496143842955 10.142482785954426 27.656152457174503 2 14.489015519735387 21.712316008931197 38.75483752794321 25.043830943390212 3 18.100559950908508 26.71234872958408 28.573003525505275 26.614087794002135 4 12.21654678078537 18.644823941451968 37.70616304689513 31.432466230867533 5 13.2993589563576 38.647973997172826 34.27815729031562 13.774509756153956 6 29.519079648184785 38.62897337349652 18.436171286763756 13.415775691554934 7 26.60095868680904 33.45850186691875 22.27908054306981 17.6614589032024 8 25.199890399901275 36.54256602249885 20.35007717274976 17.907466404850116 9 26.592512378512605 16.693081896840013 20.2978815874226 36.41652413722478 10-11 24.51906666993849 26.83726777194569 28.22043528035328 20.423230277762546 12-13 25.53425175830113 24.472485299173634 28.447754495778867 21.54550844674637 14-15 22.67164901817464 25.408426911696537 26.327977675313875 25.591946394814958 16-17 21.98001506957798 28.43817878600114 26.979901899359476 22.601904245061405 18-19 22.046247662737144 27.59358773867942 28.802453263380144 21.55771133520329 20-21 22.991876283097177 26.75555562841641 28.632726421866455 21.61984166661996 22-23 22.666773918117062 26.661956203061926 28.51501389898558 22.156255979835425 24-25 22.369907362187913 26.78923258759464 28.608133352034244 22.2327266981832 26-27 22.30539498891225 26.942794491927707 28.515109755858315 22.236700763301723 28-29 22.291835144579395 26.929396304934993 28.634151999866926 22.144616550618686 30-31 22.59674723410659 26.76001150196833 28.484308378337204 22.15893288558788 32-33 22.31642479512212 27.010389116711668 28.51724588384124 22.15594020432497 34-35 22.457977113827095 26.969587220040943 28.507781155883922 22.064654510248047 36-37 22.4711780479482 26.84310708770813 28.497603719060994 22.188111145282676 38-39 22.331420026414072 27.0149557116888 28.549590961917993 22.104033299979136 40-41 22.568823218705656 26.852842104333114 28.388626349371876 22.189708327589358 42-43 22.446375977459486 26.96588503352528 28.204523335434267 22.383215653580972 44-45 22.534939120364296 27.139691161587248 27.997433908220202 22.327935809828254 46-47 22.689143021039122 27.108411487343957 27.607369833387796 22.59507565822912 48-49 22.611670645812644 27.2397954999363 27.572651538541365 22.5758823157097 50-51 22.589738543540918 27.406847786520995 27.445295497056875 22.558118172881215 52-53 22.776574480851032 27.304197285332695 27.32590102510642 22.59332720870985 54-55 22.736718200589216 27.18328430366359 27.392353569910348 22.687643925836838 56-57 22.68882387723737 27.35522490288538 27.380582639354394 22.575368580522856 58-59 22.686110256189426 27.362319505240034 27.394582581124123 22.556987657446417 60-61 22.725446737606195 27.35778296352529 27.342819881657842 22.57395041721067 62-63 22.696018518541294 27.447290610586965 27.331881786140954 22.524809084730787 64-65 22.702154809695607 27.33996756136538 27.301704219712423 22.65617340922659 66-67 22.72726206615098 27.411852870023424 27.17279195897005 22.688093104855543 68-69 22.6694732037294 27.36732726455653 27.295320608410606 22.66787892330347 70-71 22.73346567810274 27.110631892821168 27.291150895221065 22.86475153385502 72-73 22.73083777854355 27.17024973858634 27.281049714875255 22.817862767994853 74-75 22.56810689628241 27.346271989884247 27.309196726145768 22.77642438768758 76-77 22.754646939186834 27.276039843897802 27.184761075428156 22.784552141487207 78-79 22.693446243430422 27.336327816390842 27.16222280064961 22.80800313952912 80-81 22.73387509576184 27.384488940970346 27.135247969605995 22.746387993661823 82-83 22.780387228928724 27.296410260949884 27.2377559364173 22.685446573704084 84-85 22.832262823084598 27.294555248577385 27.17804626581338 22.69513566252464 86-87 22.611515761564778 27.38862542924722 27.300821035432595 22.69903777375541 88-89 22.705159871151555 27.33536711289396 27.188144569877664 22.77132844607682 90-91 22.73380342152437 27.339705663740656 27.23070393787999 22.695786976854983 92-93 22.755902342480667 27.323971750603445 27.23604615595847 22.684079750957423 94-95 22.58525423401327 27.40106712705393 27.281306579953835 22.73237205897897 96-97 22.701832047527294 27.481853082859793 27.33004216760869 22.486272702004232 98-99 23.72997169568907 29.482436890150428 27.46845267614624 19.319138738014267 100 22.810446727144033 30.36916309893385 21.28136666051915 25.539023513402974 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 10422.0 1 9221.0 2 5821.0 3 3495.0 4 3580.0 5 5295.0 6 8601.5 7 14646.0 8 24259.5 9 30856.0 10 30610.5 11 29138.0 12 32487.5 13 42249.5 14 65889.0 15 99444.5 16 127155.0 17 143417.0 18 144800.0 19 132661.5 20 113663.5 21 93333.5 22 79576.5 23 79694.5 24 92781.5 25 117186.5 26 152353.5 27 192991.0 28 231839.5 29 275222.0 30 320845.0 31 363359.5 32 412794.5 33 465864.0 34 518116.0 35 567069.5 36 619752.5 37 670702.0 38 710894.0 39 744878.0 40 779554.5 41 810858.5 42 833803.5 43 861596.5 44 890880.5 45 922518.0 46 946399.5 47 960059.0 48 971594.0 49 970583.0 50 958938.0 51 937801.5 52 903621.5 53 857449.5 54 807986.5 55 754726.0 56 698323.5 57 636138.0 58 570109.5 59 503254.0 60 423878.5 61 342970.0 62 271733.5 63 210418.0 64 157961.5 65 115435.0 66 85003.5 67 63961.5 68 47615.5 69 34277.5 70 24338.0 71 17061.0 72 11434.5 73 7248.5 74 4581.0 75 2809.5 76 1806.0 77 1143.5 78 729.0 79 503.0 80 362.5 81 264.0 82 185.5 83 120.0 84 86.5 85 64.0 86 49.5 87 45.0 88 37.0 89 28.0 90 21.5 91 16.0 92 14.0 93 12.0 94 6.0 95 3.5 96 3.0 97 3.5 98 8.5 99 13.5 100 25.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.008048148212784004 3 0.0 4 5.7581687818487634E-5 5 0.0 6 0.01056402503439177 7 0.008823286318032874 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 4.872296661564339E-5 18-19 0.0 20-21 0.0 22-23 0.0 24-25 6.431760298495778E-5 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 1.3805221059729015E-4 50-51 0.01404654606114051 52-53 3.5610909786811017E-4 54-55 0.0 56-57 0.008166362617635384 58-59 0.02402791396557613 60-61 0.004692835139480729 62-63 0.0012913224728603985 64-65 0.002060748589712337 66-67 0.001055439913219385 68-69 0.0015992841242157944 70-71 2.7888380559770506E-5 72-73 0.005653940163676456 74-75 0.0018288720789499861 76-77 0.01981343079575172 78-79 9.424233027774393E-5 80-81 3.3547238804698676E-4 82-83 0.004015358934561568 84-85 0.0030672062833173603 86-87 0.0033803195946918068 88-89 0.0 90-91 5.543775801945283E-6 92-93 0.0 94-95 0.0018156401286473377 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 4507.0 20-21 11108.0 22-23 13499.0 24-25 13587.0 26-27 15514.0 28-29 22190.0 30-31 40374.0 32-33 48542.0 34-35 65726.0 36-37 101578.0 38-39 135717.0 40-41 139827.0 42-43 161907.0 44-45 199388.0 46-47 190967.0 48-49 169622.0 50-51 147781.0 52-53 135786.0 54-55 141805.0 56-57 147679.0 58-59 152164.0 60-61 153619.0 62-63 141303.0 64-65 145415.0 66-67 153585.0 68-69 160241.0 70-71 163257.0 72-73 152026.0 74-75 149984.0 76-77 156610.0 78-79 168602.0 80-81 176434.0 82-83 170859.0 84-85 167226.0 86-87 175367.0 88-89 192179.0 90-91 210914.0 92-93 221531.0 94-95 266653.0 96-97 759070.0 98-99 1439357.0 100-101 1.5193122E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.09413645559869 #Duplication Level Percentage of deduplicated Percentage of total 1 86.67157282835332 68.55213208107138 2 8.617053332903389 13.631167843156645 3 2.3752911243061225 5.636148009229227 4 0.9795047886181274 3.098923416394981 5 0.48437876328708845 1.9155759999811555 6 0.2675725869683244 1.2698053623270118 7 0.16907491969304142 0.9360984338594565 8 0.10795947454489314 0.6831169129062808 9 0.07426769143228995 0.5286725028349055 >10 0.24416322146623481 2.9595687817791765 >50 0.006423840005659971 0.35066787705214425 >100 0.0026589212238684514 0.37143215984543115 >500 6.544288326018709E-5 0.035732632073496536 >1k 1.30643143745637E-5 0.030957987488663796 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.3288081804266378E-5 2 0.0 3.100552420995488E-5 0.0 4.429360601422126E-6 1.7717442405688503E-5 3 0.0 3.9864245412799135E-5 0.0 4.429360601422126E-6 1.7717442405688503E-5 4 4.429360601422126E-6 6.201104841990976E-5 0.0 4.429360601422126E-6 2.6576163608532756E-5 5 8.858721202844251E-6 6.201104841990976E-5 0.0 4.429360601422126E-6 2.6576163608532756E-5 6 3.5434884811377005E-5 6.201104841990976E-5 0.0 4.429360601422126E-6 4.429360601422126E-5 7 3.5434884811377005E-5 6.201104841990976E-5 0.0 4.429360601422126E-6 4.429360601422126E-5 8 3.5434884811377005E-5 7.086976962275401E-5 0.0 4.429360601422126E-6 5.315232721706551E-5 9 3.5434884811377005E-5 1.904625058611514E-4 0.0 4.429360601422126E-6 6.64404090213319E-5 10-11 3.9864245412799135E-5 1.904625058611514E-4 0.0 8.858721202844251E-6 6.64404090213319E-5 12-13 3.9864245412799135E-5 2.0153590736470673E-4 0.0 1.3288081804266376E-5 6.64404090213319E-5 14-15 5.5367007517776576E-5 3.16699283001682E-4 0.0 2.214680300711063E-5 9.301657262986463E-5 16-17 1.306661377419527E-4 3.2998736480594837E-4 0.0 3.100552420995488E-5 1.0187529383270889E-4 18-19 1.373101786440859E-4 3.52134167813059E-4 0.0 3.100552420995488E-5 1.0630465443413102E-4 20-21 1.4173953924550802E-4 3.764956511208807E-4 0.0 3.100552420995488E-5 1.1073401503555315E-4 22-23 1.4616889984693016E-4 4.362920192400794E-4 0.0 3.764956511208807E-5 1.5281294074906334E-4 24-25 1.4616889984693016E-4 4.872296661564339E-4 0.0 4.872296661564339E-5 1.904625058611514E-4 26-27 1.4838358014764122E-4 5.093764691635445E-4 0.0 7.972849082559826E-5 1.9489186646257355E-4 28-29 1.5059826044835228E-4 5.115911494642555E-4 0.0 2.3032675127395054E-4 1.9489186646257355E-4 30-31 1.5059826044835228E-4 5.603141160798989E-4 0.0 7.928555476545605E-4 1.9932122706399567E-4 32-33 1.5059826044835228E-4 5.6252879638061E-4 0.0 0.0018559020919958708 2.214680300711063E-4 34-35 1.5059826044835228E-4 6.378279266047861E-4 0.0 0.0032622240829473957 2.3475611187537268E-4 36-37 1.550276210497744E-4 7.175564174303844E-4 0.0 0.0053085886808044176 2.391854724767948E-4 38-39 1.550276210497744E-4 7.640647037453167E-4 0.0 0.009051398389006114 2.4361483307821691E-4 40-41 1.550276210497744E-4 8.637253172773145E-4 0.0 0.013128624822615183 2.4804419367963906E-4 42-43 1.550276210497744E-4 9.058042429908248E-4 0.0 0.016926801538334653 2.502588739803501E-4 44-45 1.550276210497744E-4 9.966061353199785E-4 0.0 0.02094644628412523 2.5468823458177223E-4 46-47 1.550276210497744E-4 0.0010696905852434434 0.0 0.02512111865096559 2.657616360853275E-4 48-49 1.550276210497744E-4 0.0010763346261455768 0.0 0.02944638927825429 2.879084390924382E-4 50-51 1.7717442405688503E-4 0.0011826392805797076 0.0 0.033638779087500334 2.879084390924382E-4 52-53 1.8160378465830718E-4 0.001195927362383974 0.0 0.03830732516139926 3.16699283001682E-4 54-55 1.8160378465830718E-4 0.0012247182062932178 0.0 0.04295372443229107 3.632075693166143E-4 56-57 1.860331452597293E-4 0.0012490796896010394 0.0 0.04744952544273452 3.720662905194586E-4 58-59 1.860331452597293E-4 0.0012579384108038836 0.0 0.051752649267016115 3.85354372323725E-4 60-61 1.926771861618625E-4 0.0012845145744124166 0.0 0.05516547161041187 4.0750117533083557E-4 62-63 2.2589739067252842E-4 0.0013044466971188161 0.0 0.058385616767645754 4.252186177365241E-4 64-65 2.2589739067252842E-4 0.00133323754102806 0.0 0.06079297425451868 4.296479783379462E-4 66-67 2.3475611187537268E-4 0.0013465256228323262 0.0 0.06298329307192192 4.385066995407905E-4 68-69 2.3475611187537268E-4 0.00137531646674157 0.0 0.06531756610887138 4.429360601422126E-4 70-71 2.45829513378928E-4 0.0013908192288465476 0.0 0.06691656528598477 4.5179478134505684E-4 72-73 2.9233779969386033E-4 0.0013996779500493918 0.0 0.0682431587861107 4.960883873592781E-4 74-75 2.945524799945714E-4 0.0014218247530565025 0.0 0.069405865943984 4.960883873592781E-4 76-77 3.034112011974156E-4 0.001503767924182812 0.0 0.07037811059599616 4.983030676599892E-4 78-79 3.056258814981267E-4 0.0015502762104977442 0.0 0.07099379171959383 5.005177479607002E-4 80-81 3.056258814981267E-4 0.0015547055710991662 0.0 0.0711864689057557 5.049471085621223E-4 82-83 3.056258814981267E-4 0.0015547055710991662 0.0 0.07144115714033747 5.403819933734994E-4 84-85 3.0784056179883774E-4 0.0015635642923020104 0.0 0.07158732604018439 5.470260342756326E-4 86-87 3.100552420995488E-4 0.0015901404559105431 0.0 0.07164047836740146 5.492407145763436E-4 88 3.100552420995488E-4 0.0016964451103446741 0.0 0.07165376644920574 5.536700751777657E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 32855 0.0 51.871086 1 GTATCAA 58970 0.0 38.037632 1 TCAACGC 71630 0.0 30.670395 4 ATCAACG 71755 0.0 30.616964 3 CAACGCA 73010 0.0 30.067139 5 TATCAAC 74535 0.0 29.765696 2 AACGCAG 75365 0.0 29.190317 6 ACGCAGA 87015 0.0 25.209913 7 CGCAGAG 88785 0.0 24.720154 8 GTACATG 79005 0.0 22.245535 1 TACATGG 78905 0.0 21.876177 2 ACATGGG 79595 0.0 21.11794 3 GCAGAGT 103540 0.0 21.093674 9 GAGTACT 58885 0.0 19.723162 12-13 CATGGGG 55230 0.0 19.231447 4 CAGAGTA 100520 0.0 19.00507 10-11 GTACTTT 62580 0.0 18.536827 14-15 AGAGTAC 93045 0.0 18.50271 10-11 AGTACTT 63025 0.0 16.985956 12-13 GTGGTAT 14735 0.0 16.943382 1 >>END_MODULE