##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140068_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 20003910 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.559257215214426 33.0 31.0 34.0 28.0 34.0 2 32.04464957100887 33.0 31.0 34.0 30.0 34.0 3 32.07386126012364 33.0 31.0 34.0 30.0 34.0 4 35.3934087385916 37.0 35.0 37.0 33.0 37.0 5 35.38902754511493 37.0 35.0 37.0 33.0 37.0 6 35.46070763165801 37.0 35.0 37.0 33.0 37.0 7 35.5434161621403 37.0 35.0 37.0 33.0 37.0 8 35.71877267994107 37.0 35.0 37.0 35.0 37.0 9 37.665232397066376 39.0 38.0 39.0 35.0 39.0 10-11 37.79376956804945 39.0 38.0 39.0 35.0 39.0 12-13 37.81656438666241 39.0 38.0 39.0 35.0 39.0 14-15 39.22354769642535 41.0 39.0 41.0 36.0 41.0 16-17 39.254109346622734 41.0 39.0 41.0 36.0 41.0 18-19 39.29626880444873 41.0 39.0 41.0 36.0 41.0 20-21 39.31340256503853 41.0 39.0 41.0 36.0 41.0 22-23 39.27370591908192 41.0 39.0 41.0 36.0 41.0 24-25 39.25141915745343 41.0 39.0 41.0 36.0 41.0 26-27 39.169061078328035 41.0 39.0 41.0 36.0 41.0 28-29 39.105824178771975 41.0 39.0 41.0 35.0 41.0 30-31 39.018779243777765 41.0 39.0 41.0 35.0 41.0 32-33 38.93268037280574 40.5 38.5 41.0 35.0 41.0 34-35 38.859223191466796 40.0 38.0 41.0 35.0 41.0 36-37 38.80486746253305 40.0 38.0 41.0 35.0 41.0 38-39 38.75684450884566 40.0 38.0 41.0 35.0 41.0 40-41 38.71299362619555 40.0 38.0 41.0 35.0 41.0 42-43 38.647660816173996 40.0 38.0 41.0 35.0 41.0 44-45 38.568532310411854 40.0 38.0 41.0 34.0 41.0 46-47 38.494232340863284 40.0 38.0 41.0 34.0 41.0 48-49 38.411553549007984 40.0 38.0 41.0 34.0 41.0 50-51 38.291206121934906 40.0 38.0 41.0 34.0 41.0 52-53 38.17675962652417 40.0 37.0 41.0 34.0 41.0 54-55 38.02529415699513 40.0 37.0 41.0 33.0 41.0 56-57 37.85559440354976 40.0 36.5 41.0 33.0 41.0 58-59 37.651257005714456 39.0 36.0 41.0 33.0 41.0 60-61 37.43620580673705 39.0 35.5 41.0 33.0 41.0 62-63 37.195133328807984 39.0 35.0 40.5 33.0 41.0 64-65 37.174322180598146 38.5 35.0 40.5 33.0 41.0 66-67 36.94640882903745 38.0 35.0 40.0 33.0 41.0 68-69 36.65815196388807 37.0 35.0 40.0 32.5 41.0 70-71 36.355622390393876 37.0 35.0 39.0 32.0 41.0 72-73 36.04293497240972 36.0 35.0 39.0 32.0 41.0 74-75 35.713486816406956 36.0 35.0 39.0 32.0 40.5 76-77 35.39334751971121 35.0 35.0 37.5 32.0 39.5 78-79 35.11010762403187 35.0 35.0 37.0 31.5 39.0 80-81 34.83951073821274 35.0 34.5 36.5 31.0 39.0 82-83 34.60225370086449 35.0 34.0 36.0 31.0 37.5 84-85 34.38646332544959 35.0 34.0 36.0 31.0 37.0 86-87 34.19967528929227 35.0 34.0 35.5 31.0 37.0 88-89 34.06663824189675 35.0 34.0 35.0 31.0 36.0 90-91 33.95719702973379 35.0 34.0 35.0 31.0 36.0 92-93 33.88406698446522 35.0 34.0 35.0 31.0 36.0 94-95 33.83557758579978 35.0 34.0 35.0 31.0 36.0 96-97 33.833096129018784 35.0 34.0 35.0 31.0 35.5 98-99 33.870719809675776 35.0 34.0 35.0 31.0 35.0 100 33.297469069240876 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 5.0 17 227.0 18 1926.0 19 7139.0 20 14270.0 21 22921.0 22 32861.0 23 44103.0 24 59843.0 25 79510.0 26 103587.0 27 133081.0 28 165066.0 29 204525.0 30 251176.0 31 314157.0 32 399944.0 33 531182.0 34 766568.0 35 1177085.0 36 2047519.0 37 4312817.0 38 6048947.0 39 3124673.0 40 160777.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.53749841905908 18.75196399103975 10.184099008643809 27.526438581257363 2 14.602968976192557 21.51427864653273 38.65541370309318 25.22733867418153 3 18.11006948141638 26.726934884230136 28.468894331158257 26.69410130319523 4 12.28210691862414 18.57951235021362 37.363539768860136 31.774840962302108 5 13.343906266324934 38.61408094717483 34.05549715030711 13.986515636193126 6 29.62370403878539 38.46449781709166 18.228224561883465 13.68357358223948 7 26.72729294332377 33.477056518242975 21.972034147600844 17.823616390832406 8 25.507448293858552 36.31739494928741 20.03952227339555 18.135634483458485 9 26.741976943507545 16.559577602578695 20.088557686972198 36.60988776694156 10-11 24.79099586030931 26.72980182374346 27.81058553052878 20.66861678541845 12-13 25.806734783349857 24.38287314829951 28.081437578953317 21.728954489397324 14-15 22.918756883029367 25.143501945369678 26.148897890462415 25.788843281138536 16-17 22.115474429599367 28.222628381899824 26.786453471911642 22.87544371658917 18-19 22.14842998193853 27.28405846656979 28.76451153799432 21.80300001349736 20-21 23.191799882734024 26.396841569663863 28.586222372798293 21.825136174803816 22-23 22.882864680423644 26.335474219092575 28.46816400326248 22.3134970972213 24-25 22.55451075594834 26.508724529848937 28.59613570848874 22.34062900571398 26-27 22.494114654931977 26.650922308584956 28.472275928054952 22.38268710842811 28-29 22.393691565000136 26.610043119828354 28.622289239339672 22.373976075831845 30-31 22.77511993199035 26.48520833554608 28.473800594097646 22.265871138365924 32-33 22.44553043028581 26.680287256781078 28.532641885033172 22.34154042789994 34-35 22.567435836241707 26.63191166550029 28.56629754667315 22.23435495158485 36-37 22.624145871240454 26.484476163901565 28.538763126856953 22.352614838001024 38-39 22.448267148712194 26.6559430940864 28.56372873933155 22.332061017869854 40-41 22.673912747989274 26.524830279766853 28.402584522868857 22.398672449375017 42-43 22.650740967718107 26.58540899859138 28.203491241462373 22.560358792228136 44-45 22.68833745959168 26.878130434594492 27.93547012576969 22.49806198004414 46-47 22.89164184578404 26.829712983188163 27.432896181883404 22.845748989144386 48-49 22.83516421106167 26.964498176708908 27.37902077776524 22.821316834464184 50-51 22.73318978126385 27.12631005208831 27.28011469147408 22.860385475173764 52-53 22.900794557765945 27.031552727126073 27.20204259361674 22.86561012149125 54-55 22.885482039365584 26.889435250058607 27.24714347914039 22.977939231435414 56-57 22.943451515278973 27.074232002769737 27.156504820529488 22.825811661421803 58-59 22.85175066522564 27.202204983747308 27.223935259959305 22.72210909106775 60-61 22.98328029499419 27.219720938879487 27.066290340064604 22.730708426061717 62-63 22.899729362130543 27.33201276278538 27.014623150776316 22.75363472430776 64-65 22.86431713565913 27.239056103185742 27.017041115295164 22.879585645859958 66-67 22.946862056233076 27.28535353067954 26.88067801558135 22.88710639750603 68-69 22.82199813628656 27.19524336680264 27.05706725018989 22.925691246720913 70-71 22.913336760429 26.88059266672816 27.08684146245584 23.119229110386996 72-73 22.985531502308007 26.86954375826559 27.089139898790982 23.055784840635418 74-75 22.754217268733633 27.119692769743832 27.135349016105714 22.990740945416817 76-77 22.940597748676847 27.066930950197275 26.9767500049701 23.015721296155775 78-79 22.920048191087094 27.137061999124573 26.910895816352664 23.03199399343567 80-81 22.930852424796235 27.155211244410477 26.954097541204835 22.959838789588456 82-83 22.943036360200377 27.05007167218625 27.117305015818836 22.889586951794534 84-85 23.08236943155279 27.07435689505021 26.94726682651322 22.896006846883772 86-87 22.794636747220174 27.200401497516257 27.081092138985923 22.923869616277646 88-89 22.92344551630887 27.080486317360318 26.974344101443005 23.0217240648878 90-91 22.997302101169918 27.07872346494065 27.015370681353083 22.908603752536344 92-93 22.991854622373133 27.07973291368015 27.05187427180874 22.87653819213798 94-95 22.789752286620047 27.1497503048843 27.12495251547856 22.93554489301709 96-97 22.926276402170178 27.243814649608243 27.12472283977653 22.705186108445044 98-99 23.921730710985496 29.30018497215195 27.21419973896702 19.563884577895536 100 23.02518185314829 30.156507403545863 20.980694658464426 25.837616084841418 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 14569.0 1 12620.0 2 7561.5 3 4275.0 4 4331.5 5 6079.0 6 9264.0 7 15135.0 8 24555.0 9 30865.5 10 30719.0 11 29247.5 12 32277.0 13 42230.0 14 66882.0 15 102011.5 16 130879.0 17 147252.5 18 148092.0 19 134922.0 20 113613.5 21 90739.0 22 75122.0 23 72684.0 24 82318.5 25 102920.5 26 132098.0 27 165492.5 28 197210.0 29 232155.5 30 270692.0 31 307659.0 32 349294.0 33 393226.5 34 436494.5 35 476722.0 36 522929.5 37 569974.5 38 602143.5 39 627424.0 40 656743.0 41 684904.5 42 710807.0 43 739156.5 44 766949.0 45 804498.5 46 834085.5 47 851404.5 48 865348.5 49 863852.5 50 858151.0 51 851696.5 52 830346.0 53 794129.0 54 756393.0 55 708976.0 56 657325.0 57 600680.5 58 540736.5 59 484259.0 60 411582.5 61 335406.5 62 266646.5 63 205502.5 64 155270.5 65 114222.5 66 83913.5 67 63679.0 68 48338.0 69 35162.5 70 25238.0 71 17948.0 72 12294.5 73 8065.5 74 5234.5 75 3254.0 76 2063.5 77 1324.5 78 866.5 79 563.5 80 382.0 81 269.0 82 203.5 83 145.5 84 97.5 85 67.0 86 45.5 87 35.0 88 27.0 89 19.5 90 15.5 91 10.5 92 6.0 93 3.0 94 1.5 95 4.0 96 4.0 97 2.5 98 5.5 99 12.0 100 23.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007968442169555853 3 0.0 4 2.4995113455319487E-5 5 0.0 6 0.010767894876551633 7 0.009008238889297143 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 4.749071556510702E-5 18-19 0.0 20-21 0.0 22-23 0.0 24-25 6.509026718252873E-5 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 1.4889630085220798E-4 50-51 0.01416869043331309 52-53 2.917395801764792E-4 54-55 0.0 56-57 0.007910169409141854 58-59 0.024132482664009636 60-61 0.00461411563725181 62-63 0.0012228394320393243 64-65 0.001960795393543502 66-67 0.0010194094709005722 68-69 0.001588007961174957 70-71 1.73875954981081E-5 72-73 0.0054206779391038585 74-75 0.0017418449604136997 76-77 0.01948731515127314 78-79 7.791697478834453E-5 80-81 2.9343238723370673E-4 82-83 0.004059863961870637 84-85 0.00300038644237303 86-87 0.003392804105280517 88-89 6.288418107864669E-6 90-91 6.35944384247009E-6 92-93 0.0 94-95 0.001849281412295236 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 4280.0 20-21 10755.0 22-23 13556.0 24-25 13452.0 26-27 15416.0 28-29 23392.0 30-31 40893.0 32-33 48249.0 34-35 64734.0 36-37 100546.0 38-39 138262.0 40-41 139902.0 42-43 160076.0 44-45 195922.0 46-47 187390.0 48-49 163750.0 50-51 141949.0 52-53 127227.0 54-55 131289.0 56-57 137902.0 58-59 141603.0 60-61 142606.0 62-63 131373.0 64-65 134998.0 66-67 145807.0 68-69 151435.0 70-71 160840.0 72-73 138686.0 74-75 134281.0 76-77 141089.0 78-79 153338.0 80-81 162008.0 82-83 155122.0 84-85 149998.0 86-87 157511.0 88-89 172440.0 90-91 189934.0 92-93 197394.0 94-95 236376.0 96-97 664880.0 98-99 1254993.0 100-101 1.3228256E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.38514857341406 #Duplication Level Percentage of deduplicated Percentage of total 1 85.94199740364637 66.50634237777139 2 8.701043646062532 13.466631105886185 3 2.600941777017008 6.038227975357821 4 1.1354366054841183 3.5146372164432567 5 0.5913442048524643 2.2880629575267672 6 0.31404957999838506 1.4581664044555986 7 0.1935966210881556 1.0487052300352504 8 0.12810365160423637 0.7930656089752562 9 0.0829731258667311 0.5778798905517814 >10 0.30204210132996956 3.580236146575144 >50 0.0056714582869289015 0.30516503390638544 >100 0.0026914729780664923 0.3300441508254064 >500 7.741470111486872E-5 0.04035786998209079 >1k 3.0937083956066944E-5 0.05247803170770771 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.998045382127794E-6 2 4.999022691063897E-6 2.4995113455319484E-5 0.0 0.0 9.998045382127794E-6 3 4.999022691063897E-6 2.4995113455319484E-5 0.0 4.999022691063897E-6 9.998045382127794E-6 4 4.999022691063897E-6 9.498143113021404E-5 0.0 1.4997068073191692E-5 1.4997068073191692E-5 5 4.999022691063897E-6 9.998045382127794E-5 0.0 1.9996090764255588E-5 1.4997068073191692E-5 6 4.999022691063897E-6 9.998045382127794E-5 0.0 1.9996090764255588E-5 3.9992181528511176E-5 7 4.999022691063897E-6 9.998045382127794E-5 0.0 2.4995113455319484E-5 3.9992181528511176E-5 8 4.999022691063897E-6 1.0497947651234183E-4 0.0 3.499315883744728E-5 4.499120421957507E-5 9 4.999022691063897E-6 1.8996286226042808E-4 0.0 7.998436305702235E-5 5.998827229276677E-5 10-11 4.999022691063897E-6 1.8996286226042808E-4 0.0 8.498338574808625E-5 5.998827229276677E-5 12-13 4.999022691063897E-6 1.8996286226042808E-4 0.0 1.1997654458553353E-4 6.998631767489456E-5 14-15 9.998045382127794E-6 2.749462480085143E-4 0.0 1.2497556727659743E-4 1.1247801054893768E-4 16-17 1.749657941872364E-5 2.849442933906421E-4 0.0 1.4497165804085301E-4 1.4747116938638495E-4 18-19 1.9996090764255588E-5 3.1243891819149355E-4 0.0 1.599687261140447E-4 1.8246432822383225E-4 20-21 2.4995113455319484E-5 3.499315883744728E-4 0.0 1.599687261140447E-4 2.0246041898808783E-4 22-23 2.4995113455319484E-5 3.799257245208562E-4 0.0 2.074594416791517E-4 2.374535778255351E-4 24-25 3.499315883744728E-5 4.074203493217076E-4 0.0 2.324545551344712E-4 2.9244282742723796E-4 26-27 3.749267018297923E-5 4.2491692874043125E-4 0.0 2.774457593540463E-4 3.1493842953702554E-4 28-29 3.9992181528511176E-5 4.274164400859632E-4 0.0 4.474125308502188E-4 3.1993745222808946E-4 30-31 3.9992181528511176E-5 4.924037350697939E-4 0.0 0.0011022845033795893 3.299354976102172E-4 32-33 4.2491692874043124E-5 5.049012917974536E-4 0.0 0.0025370040157149274 3.424330543378769E-4 34-35 4.499120421957507E-5 6.023822342731996E-4 0.0 0.004374144854680909 3.499315883744728E-4 36-37 4.499120421957507E-5 7.048621994400095E-4 0.0 0.006948641540578816 3.549306110655367E-4 38-39 4.499120421957507E-5 7.423548696229887E-4 0.0 0.011772698437455478 3.6742816779319643E-4 40-41 4.499120421957507E-5 8.073421646068193E-4 0.0 0.016966683013470867 3.8992376990298395E-4 42-43 4.499120421957507E-5 8.573323915174584E-4 0.0 0.021478300992156033 3.974223039395798E-4 44-45 4.499120421957507E-5 9.298182205378848E-4 0.0 0.0261148945381178 4.2241741739489926E-4 46-47 4.499120421957507E-5 9.723099134119279E-4 0.0 0.03111141771783616 4.524115535412827E-4 48-49 4.999022691063897E-5 9.873069814851196E-4 0.0 0.03605295164795283 4.84905201033198E-4 50-51 4.999022691063897E-5 0.0011597732643268241 0.0 0.04132692058702524 4.84905201033198E-4 52-53 4.999022691063897E-5 0.001164772287017888 0.0 0.04715078202211467 5.248973825617092E-4 54-55 4.999022691063897E-5 0.0011847683777821436 0.0 0.05257972066461007 5.748876094723481E-4 56-57 4.999022691063897E-5 0.001219761536619591 0.0 0.057803699376771836 5.848856548544759E-4 58-59 4.999022691063897E-5 0.0012222610479651229 0.0 0.06293519616914893 5.898846775455398E-4 60-61 4.999022691063897E-5 0.0012297595820017187 0.0 0.067516800465509 6.048817456187315E-4 62-63 4.999022691063897E-5 0.0012372581160383146 0.0 0.07143103523261202 6.298768590740511E-4 64-65 4.999022691063897E-5 0.0012697517635302299 0.0 0.07447793956281547 6.323763704195831E-4 66-67 4.999022691063897E-5 0.0012747507862212936 0.0 0.07751734535898232 6.398749044561788E-4 68-69 4.999022691063897E-5 0.0012997458996766133 0.0 0.0802068195667747 6.473734384927747E-4 70-71 4.999022691063897E-5 0.0013222415017864007 0.0 0.08222392522261898 6.673695292570303E-4 72-73 4.999022691063897E-5 0.0013322395471685286 0.0 0.08405106801620282 7.098612221310734E-4 74-75 5.4989249601702864E-5 0.001362233683314912 0.0 0.08541580121086328 7.173597561676692E-4 76-77 5.4989249601702864E-5 0.0014472170690629982 0.0 0.08672804466726755 7.223587788587331E-4 78-79 5.4989249601702864E-5 0.0014797107165549135 0.0 0.08756788047936628 7.24858290204265E-4 80-81 5.4989249601702864E-5 0.0014797107165549135 0.0 0.08786282281813905 7.523529150051166E-4 82-83 5.4989249601702864E-5 0.0014922082732825733 0.0 0.08825274658804204 7.798475398059679E-4 84-85 5.4989249601702864E-5 0.0014997068073191692 0.0 0.08845770651837566 7.873460738425638E-4 86-87 5.4989249601702864E-5 0.0015346999661566166 0.0 0.08855018843816034 7.948446078791596E-4 88 5.4989249601702864E-5 0.0016746726015064055 0.0 0.08855768697219693 7.998436305702235E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 32335 0.0 52.00926 1 GTATCAA 59935 0.0 39.160282 1 ATCAACG 73880 0.0 31.119635 3 TCAACGC 74250 0.0 30.941586 4 TATCAAC 75795 0.0 30.628416 2 CAACGCA 74990 0.0 30.60782 5 AACGCAG 77415 0.0 29.753708 6 ACGCAGA 88430 0.0 25.991495 7 CGCAGAG 89745 0.0 25.58966 8 GCAGAGT 103655 0.0 22.00345 9 GTACATG 75030 0.0 21.69203 1 TACATGG 74115 0.0 21.597288 2 ACATGGG 75575 0.0 20.70435 3 GAGTACT 59395 0.0 20.477842 12-13 CAGAGTA 99860 0.0 19.504866 10-11 GTACTTT 63635 0.0 19.096157 14-15 AGAGTAC 93585 0.0 18.96288 10-11 CATGGGG 53530 0.0 18.833986 4 CTTATAC 11870 0.0 18.109505 1 AGTACTT 63160 0.0 18.08248 12-13 >>END_MODULE