##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140067_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5513473 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.666153439039242 31.0 18.0 33.0 18.0 33.0 2 30.455998786971477 32.0 29.0 33.0 25.0 33.0 3 31.449065951715006 33.0 31.0 33.0 29.0 33.0 4 32.45725643346761 33.0 33.0 33.0 31.0 34.0 5 32.92681763382173 33.0 33.0 34.0 32.0 34.0 6 37.08753176083387 38.0 37.0 38.0 36.0 38.0 7 37.20852845384388 38.0 38.0 38.0 36.0 38.0 8 37.43151476392466 38.0 38.0 38.0 37.0 38.0 9 37.47958319556476 38.0 38.0 38.0 37.0 38.0 10-11 37.49887765841966 38.0 38.0 38.0 37.0 38.0 12-13 37.52014728284695 38.0 38.0 38.0 37.0 38.0 14-15 37.52603377217953 38.0 38.0 38.0 37.0 38.0 16-17 37.46411481474563 38.0 38.0 38.0 37.0 38.0 18-19 37.494798287758 38.0 38.0 38.0 37.0 38.0 20-21 37.519260636623564 38.0 38.0 38.0 37.0 38.0 22-23 37.52800346800598 38.0 38.0 38.0 37.5 38.0 24-25 37.52318350070378 38.0 38.0 38.0 38.0 38.0 26-27 37.492166295769415 38.0 38.0 38.0 37.0 38.0 28-29 37.463506887245714 38.0 38.0 38.0 37.0 38.0 30-31 37.36917949534179 38.0 38.0 38.0 37.0 38.0 32-33 37.43088807862078 38.0 38.0 38.0 37.0 38.0 34-35 37.438589792741716 38.0 38.0 38.0 37.0 38.0 36-37 37.42115955938515 38.0 38.0 38.0 37.0 38.0 38-39 37.39578804229603 38.0 38.0 38.0 37.0 38.0 40-41 37.389681402501154 38.0 38.0 38.0 37.0 38.0 42-43 37.36910887152255 38.0 38.0 38.0 37.0 38.0 44-45 37.33852860886881 38.0 38.0 38.0 37.0 38.0 46-47 37.31455030973389 38.0 38.0 38.0 37.0 38.0 48-49 37.287423957168805 38.0 38.0 38.0 37.0 38.0 50-51 37.248558038914965 38.0 38.0 38.0 37.0 38.0 52-53 37.22816554621335 38.0 38.0 38.0 37.0 38.0 54-55 37.21454905549152 38.0 38.0 38.0 37.0 38.0 56-57 37.206183800290745 38.0 38.0 38.0 37.0 38.0 58-59 37.1954513711037 38.0 38.0 38.0 37.0 38.0 60-61 37.19515008245078 38.0 38.0 38.0 37.0 38.0 62-63 37.20200832482086 38.0 38.0 38.0 37.0 38.0 64-65 37.20454694526521 38.0 38.0 38.0 37.0 38.0 66-67 37.1857818207243 38.0 38.0 38.0 37.0 38.0 68-69 37.18679239526625 38.0 38.0 38.0 36.5 38.0 70-71 37.169081403597566 38.0 38.0 38.0 36.0 38.0 72-73 37.162934168917175 38.0 38.0 38.0 36.0 38.0 74-75 37.1519765339433 38.0 38.0 38.0 36.0 38.0 76-77 37.1550754272056 38.0 38.0 38.0 36.0 38.0 78-79 37.13972357463786 38.0 38.0 38.0 36.0 38.0 80-81 37.13872937945447 38.0 38.0 38.0 36.0 38.0 82-83 37.08601422367168 38.0 38.0 38.0 36.0 38.0 84-85 37.07593632079855 38.0 38.0 38.0 36.0 38.0 86-87 37.073603937518925 38.0 38.0 38.0 36.0 38.0 88-89 37.07941694030833 38.0 38.0 38.0 36.0 38.0 90-91 37.07085412832015 38.0 38.0 38.0 36.0 38.0 92-93 37.05645656487262 38.0 38.0 38.0 36.0 38.0 94-95 37.02700329577539 38.0 38.0 38.0 36.0 38.0 96-97 36.99220652720694 38.0 38.0 38.0 36.0 38.0 98-99 36.99825216781305 38.0 38.0 38.0 36.0 38.0 100 35.47419140921428 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 9.0 19 15.0 20 41.0 21 103.0 22 341.0 23 818.0 24 1979.0 25 3852.0 26 7084.0 27 11583.0 28 17922.0 29 26632.0 30 36421.0 31 48366.0 32 62594.0 33 84226.0 34 126483.0 35 233196.0 36 764366.0 37 4087439.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.06400321539618 21.342718101639385 14.267377386268146 24.32590129669629 2 14.005214163238897 20.9786904226164 41.81038446699574 23.20571094714896 3 17.48358974461288 26.058892462155885 31.30366286367957 25.15385492955166 4 12.344640664056357 18.438069478586836 39.54359547614871 29.673694381208094 5 13.19182325484547 37.499650843941936 35.94123585645895 13.367290044753643 6 29.23819523556205 38.56298924471018 19.11022326580723 13.088592253920533 7 25.75875496261612 32.92349486430785 23.698184429306174 17.61956574376985 8 23.596506231190396 37.26163164306781 21.71458897141602 17.427273154325775 9 25.083259906940437 17.022003250954302 21.848901360997036 36.04583548110823 10-11 23.616630201222865 27.0514918184458 29.55687910939071 19.774998870940625 12-13 24.444558306947208 24.570205074932357 29.54561757585623 21.439619042264198 14-15 21.70322589772363 26.0199424210475 27.109437191403675 25.167394489825195 16-17 21.389376532722657 29.100187848929345 27.823696606476535 21.686739011871463 18-19 21.34870343973753 28.299322405315124 29.436663605680124 20.91531054926722 20-21 22.11139206343247 27.493197924834277 29.268484676671765 21.12692533506149 22-23 21.824631698088567 27.496462995679412 29.092014713937974 21.586890592294047 24-25 21.64686795278493 27.557522326157812 29.247892547112038 21.547717173945223 26-27 21.659230913383105 27.771418298356902 29.079993563521494 21.4893572247385 28-29 21.523669545092456 27.75389600119702 29.161507824849604 21.56092662886092 30-31 21.95790683432136 27.559489129532345 29.04993070100714 21.432673335139157 32-33 21.721448276226273 27.738972733965824 29.03190090852788 21.50767808128002 34-35 21.769791493798955 27.778112159934487 29.061055817292047 21.391040528974507 36-37 21.77330933197137 27.652480927183344 29.06276430772031 21.511445433124983 38-39 21.574339958781525 27.697910805824655 29.216533257206635 21.511215978187188 40-41 21.83417353313459 27.558792064329683 29.077342473110836 21.529691929424892 42-43 21.751463769163013 27.618322822445673 28.972288241519202 21.65792516687212 44-45 21.75207452274115 27.735191578469166 28.8690536550266 21.643680243763082 46-47 21.859235336772347 27.6783289900727 28.59553883794389 21.866896835211065 48-49 21.78773229029638 27.744199948525267 28.66206683632273 21.806000924855624 50-51 21.730476999823843 27.883573404467434 28.59045884204474 21.79549075366398 52-53 21.875339171991758 27.800562334363395 28.56230666891733 21.76179182472752 54-55 21.85035651225416 27.743391734755157 28.54593358720814 21.860318165782544 56-57 21.899803365168506 27.825422725283516 28.39582215339893 21.878951756149046 58-59 21.749281874492222 27.955592995007557 28.58546741536699 21.709657715133236 60-61 21.902324297612573 28.001946482400204 28.451637851636463 21.64409136835076 62-63 21.7994981498664 28.091463982503623 28.41789787408622 21.691139993543757 64-65 21.74844816379092 28.069407113557034 28.41483248312003 21.767312239532025 66-67 21.79371633505764 28.136911212861275 28.229989317230764 21.839383134850323 68-69 21.834960722429223 28.058086341344495 28.27050176212037 21.836451174105914 70-71 21.833236316095846 27.80494377386177 28.343826282653843 22.017993627388545 72-73 21.90552573257504 27.74077114236846 28.362806643922404 21.990896481134094 74-75 21.84928172185443 27.827584057016274 28.244071741216192 22.079062479913098 76-77 21.96059093991601 27.758473411352785 28.182267146516516 22.09866850221469 78-79 21.964755136883543 27.83434081402458 28.11069523983273 22.090208809259153 80-81 21.98086526273152 27.824018250678634 28.12276605501803 22.07235043157182 82-83 22.029055372763395 27.7860277551377 28.171919424651552 22.012997447447347 84-85 22.136314381525978 27.81424108347594 28.055946173568934 21.993498361429147 86-87 21.949109166825373 27.811992618815708 28.143042073182016 22.095856141176903 88-89 22.051743039762805 27.831578734893103 28.04950959821334 22.067168627130755 90-91 22.091333580096308 27.825873387424238 28.108295348633796 21.974497683845655 92-93 22.156150944774144 27.821062403358614 28.058478951781247 21.964307700085996 94-95 22.074670646691313 27.94096060203787 28.047936775709264 21.93643197556155 96-97 22.114111228873988 28.015372559381014 28.136347395822387 21.734168815922608 98-99 23.186519663707266 29.877666943859506 28.390640165060688 18.545173227372548 100 22.016530733628215 30.88107853123953 22.314767592105174 24.78762314302708 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 826.0 1 796.0 2 1115.5 3 1624.0 4 2067.0 5 2721.0 6 3332.0 7 4216.5 8 5418.0 9 6359.0 10 6715.0 11 6830.5 12 7510.5 13 8958.0 14 11680.5 15 14731.5 16 16592.5 17 17453.5 18 17470.0 19 16716.5 20 16069.5 21 16375.0 22 18282.0 23 22256.0 24 28732.0 25 37721.5 26 49509.0 27 62934.5 28 75802.5 29 89482.5 30 102794.0 31 115091.5 32 128242.0 33 141595.0 34 154446.0 35 166213.0 36 179222.0 37 191423.5 38 199793.0 39 206780.5 40 214363.0 41 220853.5 42 225486.0 43 230977.5 44 237778.5 45 243678.0 46 241896.5 47 237362.0 48 233720.5 49 226457.5 50 218390.0 51 208436.0 52 195639.0 53 182970.5 54 171068.5 55 158447.0 56 144654.5 57 128941.0 58 113745.5 59 98761.0 60 81958.5 61 65760.0 62 51466.0 63 39559.5 64 30017.5 65 22258.0 66 16210.0 67 12233.5 68 9239.0 69 6651.5 70 4732.5 71 3342.5 72 2338.0 73 1567.5 74 1022.5 75 658.5 76 424.0 77 266.5 78 160.5 79 88.0 80 56.5 81 39.5 82 25.0 83 17.0 84 12.5 85 9.5 86 8.0 87 6.0 88 4.0 89 2.0 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007472603928594554 3 0.0 4 0.003736301964297277 5 0.003246592483539867 6 0.0 7 0.0 8 0.0 9 2.720608226430056E-4 10-11 6.166711979908127E-4 12-13 9.068694088100187E-6 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 9.703994608569426E-4 24-25 0.0014602124309788874 26-27 0.0 28-29 0.002005272869547291 30-31 0.0029884240804487396 32-33 6.009348360831869E-4 34-35 0.0 36-37 0.0010825633448638562 38-39 0.002225031568212405 40-41 0.0015523152549645272 42-43 0.0 44-45 0.0 46-47 0.0013704852859845894 48-49 4.607937037148325E-4 50-51 0.001693793987224922 52-53 0.0025938518495187577 54-55 0.001876370929650433 56-57 0.001821759812057753 58-59 0.0019063149026616647 60-61 8.553018450772649E-4 62-63 6.086929880393856E-4 64-65 0.003324631664057939 66-67 0.0025083078666108716 68-69 9.380456298747105E-5 70-71 0.002989374877504049 72-73 0.009645421747926953 74-75 0.012242457744744006 76-77 0.00501307296825458 78-79 0.004547037960006397 80-81 3.4214386906882563E-4 82-83 7.800512805711848E-5 84-85 6.749334768691862E-5 86-87 0.0021463072953325653 88-89 0.004484114651127852 90-91 5.792524515411881E-4 92-93 0.0010181913340682257 94-95 0.0025548720878450183 96-97 0.0024739600690835335 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 52.0 20-21 161.0 22-23 294.0 24-25 435.0 26-27 1339.0 28-29 3648.0 30-31 12529.0 32-33 15754.0 34-35 21562.0 36-37 32712.0 38-39 37077.0 40-41 35841.0 42-43 40242.0 44-45 46402.0 46-47 46012.0 48-49 43274.0 50-51 39523.0 52-53 37263.0 54-55 39614.0 56-57 39954.0 58-59 40456.0 60-61 40838.0 62-63 40329.0 64-65 42776.0 66-67 46164.0 68-69 47019.0 70-71 49790.0 72-73 42138.0 74-75 41797.0 76-77 43000.0 78-79 44072.0 80-81 43879.0 82-83 42213.0 84-85 41941.0 86-87 42739.0 88-89 43676.0 90-91 43892.0 92-93 43715.0 94-95 52190.0 96-97 165662.0 98-99 364674.0 100-101 3656825.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.52573310494279 #Duplication Level Percentage of deduplicated Percentage of total 1 91.15424072327978 79.78341744929494 2 6.447326814656744 11.286140120399743 3 1.40020101312033 3.676608605029215 4 0.48608638095089185 1.701802673802212 5 0.20023914917042404 0.8763039163725682 6 0.1039027378670834 0.5456497982056305 7 0.06307327295954428 0.3864374118578595 8 0.03525498561621848 0.2468574769330989 9 0.025732242439760387 0.20270100455767348 >10 0.08176919319211967 1.0591214534356412 >50 0.0013686653020382855 0.0765501281406431 >100 7.446915864203594E-4 0.11591196410920214 >500 6.012985860797284E-5 0.04249799786155979 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.8137388176200374E-5 0.0 0.0 0.0 3 0.0 1.8137388176200374E-5 0.0 0.0 0.0 4 0.0 9.068694088100187E-5 0.0 0.0 0.0 5 0.0 9.068694088100187E-5 0.0 0.0 0.0 6 0.0 9.068694088100187E-5 0.0 0.0 0.0 7 0.0 9.068694088100187E-5 0.0 0.0 0.0 8 0.0 9.068694088100187E-5 0.0 0.0 0.0 9 0.0 1.6323649358580337E-4 0.0 0.0 0.0 10-11 0.0 1.6323649358580337E-4 0.0 0.0 0.0 12-13 0.0 1.6323649358580337E-4 0.0 0.0 0.0 14-15 0.0 1.995112699382041E-4 0.0 9.068694088100187E-6 0.0 16-17 0.0 1.995112699382041E-4 0.0 1.8137388176200374E-5 0.0 18-19 0.0 2.0857996402630428E-4 0.0 1.8137388176200374E-5 0.0 20-21 0.0 2.3578604629060485E-4 0.0 3.627477635240075E-5 0.0 22-23 0.0 2.9926690490730617E-4 0.0 6.34808586167013E-5 0.0 24-25 0.0 3.536790694359073E-4 0.0 9.068694088100187E-5 0.0 26-27 0.0 3.627477635240075E-4 0.0 1.7230518767390353E-4 0.0 28-29 0.0 3.808851517002078E-4 0.0 5.531903393741113E-4 0.0 30-31 0.0 4.534347044050093E-4 0.0 0.0017230518767390355 0.0 32-33 0.0 4.534347044050093E-4 0.0 0.004634102679019195 9.068694088100187E-6 34-35 0.0 5.259842571098108E-4 0.0 0.00825251162017117 1.8137388176200374E-5 36-37 0.0 5.622590334622116E-4 0.0 0.013739071543471782 1.8137388176200374E-5 38-39 0.0 6.438772802551133E-4 0.0 0.027795547380027073 1.8137388176200374E-5 40-41 0.0 6.892207506956142E-4 0.0 0.043266739494325995 1.8137388176200374E-5 42-43 0.0 7.073581388718146E-4 0.0 0.05258028832280488 1.8137388176200374E-5 44-45 0.0 7.980450797528164E-4 0.0 0.0630546299945606 1.8137388176200374E-5 46-47 0.0 8.887320206338183E-4 0.0 0.07493461924997184 1.8137388176200374E-5 48-49 0.0 8.887320206338183E-4 0.0 0.08593494517883737 1.8137388176200374E-5 50-51 0.0 9.794189615148201E-4 0.0 0.09741591189437221 1.8137388176200374E-5 52-53 0.0 9.794189615148201E-4 0.0 0.12853967000473204 1.8137388176200374E-5 54-55 0.0 9.794189615148201E-4 0.0 0.16775270324167724 1.8137388176200374E-5 56-57 0.0 0.001015693737867221 0.0 0.21712267385729467 1.8137388176200374E-5 58-59 0.0 0.0010610372083077217 0.0 0.2529168094230261 1.8137388176200374E-5 60-61 0.0 0.0011063806787482227 0.0 0.26861471888952754 1.8137388176200374E-5 62-63 0.0 0.0011335867610125232 0.0 0.2824082025975279 1.8137388176200374E-5 64-65 0.0 0.001215205007805425 0.0 0.2887653571532861 1.8137388176200374E-5 66-67 0.0 0.0012242737018935252 0.0 0.295086236932692 1.8137388176200374E-5 68-69 0.0 0.0012514797841578257 0.0 0.3014705975707145 1.8137388176200374E-5 70-71 0.0 0.0012514797841578257 0.0 0.3066125471186673 1.8137388176200374E-5 72-73 0.0 0.0012514797841578257 0.0 0.310566497741079 1.8137388176200374E-5 74-75 0.0 0.0012877545605102267 0.0 0.3139037771654999 1.8137388176200374E-5 76-77 0.0 0.0013512354191269277 0.0 0.3167966905796038 1.8137388176200374E-5 78-79 0.0 0.0013784415013912284 0.0 0.31876459719672157 1.8137388176200374E-5 80-81 0.0 0.0013784415013912284 0.0 0.31947195533559336 1.8137388176200374E-5 82-83 0.0 0.0013965788895674287 0.0 0.31994352742817456 1.8137388176200374E-5 84-85 0.0 0.0014147162777436292 0.0 0.32013397000402466 1.8137388176200374E-5 86-87 0.0 0.0014328536659198295 0.0 0.32022465694490565 1.8137388176200374E-5 88 0.0 0.0015235406068008312 0.0 0.32023372563899377 1.8137388176200374E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6485 0.0 45.138115 1 GTATCAA 11085 0.0 35.491512 1 ATCAACG 12620 0.0 30.462889 3 TCAACGC 12660 0.0 30.29951 4 CAACGCA 13100 0.0 29.313854 5 AACGCAG 13550 0.0 28.401768 6 TATCAAC 13780 0.0 28.023909 2 ACGCAGA 15450 0.0 24.936607 7 CGCAGAG 15600 0.0 24.669481 8 GCAGAGT 18955 0.0 20.280521 9 GAGTACT 11440 0.0 18.88981 12-13 GTACATG 13025 0.0 18.182121 1 CAGAGTA 18565 0.0 17.937176 10-11 TACATGG 13110 0.0 17.80385 2 AGAGTAC 17040 0.0 17.777264 10-11 ACATGGG 13175 0.0 17.00256 3 GTACTTT 12940 0.0 16.6837 14-15 GTGGTAT 3320 0.0 16.322811 1 TATGCCG 2725 0.0 16.14506 42-43 CTTATAC 5100 0.0 16.064245 1 >>END_MODULE