##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140066_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4443941 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.573477910710334 31.0 18.0 33.0 18.0 33.0 2 30.35672210769675 32.0 28.0 33.0 25.0 33.0 3 31.406332127271718 33.0 31.0 33.0 29.0 33.0 4 32.48747204339571 33.0 33.0 33.0 31.0 34.0 5 32.94737486388771 33.0 33.0 34.0 32.0 34.0 6 37.12152569082263 38.0 37.0 38.0 36.0 38.0 7 37.232020182086124 38.0 38.0 38.0 36.0 38.0 8 37.456006279111264 38.0 38.0 38.0 37.0 38.0 9 37.50539059812 38.0 38.0 38.0 37.0 38.0 10-11 37.52490885905101 38.0 38.0 38.0 37.0 38.0 12-13 37.544715377634404 38.0 38.0 38.0 37.5 38.0 14-15 37.551037243743785 38.0 38.0 38.0 38.0 38.0 16-17 37.48805980997498 38.0 38.0 38.0 37.5 38.0 18-19 37.52021730261495 38.0 38.0 38.0 37.0 38.0 20-21 37.54596428552641 38.0 38.0 38.0 38.0 38.0 22-23 37.55326534014522 38.0 38.0 38.0 38.0 38.0 24-25 37.550322649559384 38.0 38.0 38.0 38.0 38.0 26-27 37.520956756907474 38.0 38.0 38.0 38.0 38.0 28-29 37.492868212294624 38.0 38.0 38.0 37.0 38.0 30-31 37.39807954392289 38.0 38.0 38.0 37.0 38.0 32-33 37.46211420100253 38.0 38.0 38.0 37.0 38.0 34-35 37.47365443806625 38.0 38.0 38.0 37.0 38.0 36-37 37.45751331493045 38.0 38.0 38.0 37.0 38.0 38-39 37.43652928280265 38.0 38.0 38.0 37.0 38.0 40-41 37.42039443308153 38.0 38.0 38.0 37.0 38.0 42-43 37.39840080960237 38.0 38.0 38.0 37.0 38.0 44-45 37.365440651726175 38.0 38.0 38.0 37.0 38.0 46-47 37.340929647144236 38.0 38.0 38.0 37.0 38.0 48-49 37.31384403938279 38.0 38.0 38.0 37.0 38.0 50-51 37.27164486039008 38.0 38.0 38.0 37.0 38.0 52-53 37.25192114575438 38.0 38.0 38.0 37.0 38.0 54-55 37.23926961681431 38.0 38.0 38.0 37.0 38.0 56-57 37.22935797361659 38.0 38.0 38.0 37.0 38.0 58-59 37.21977350511756 38.0 38.0 38.0 37.0 38.0 60-61 37.21833298308387 38.0 38.0 38.0 37.0 38.0 62-63 37.22342768427117 38.0 38.0 38.0 37.0 38.0 64-65 37.22648455009873 38.0 38.0 38.0 37.0 38.0 66-67 37.207496825465654 38.0 38.0 38.0 37.0 38.0 68-69 37.2095910905043 38.0 38.0 38.0 37.0 38.0 70-71 37.19314667715028 38.0 38.0 38.0 36.5 38.0 72-73 37.186581569280044 38.0 38.0 38.0 36.0 38.0 74-75 37.17626911654717 38.0 38.0 38.0 36.0 38.0 76-77 37.179437913724904 38.0 38.0 38.0 36.0 38.0 78-79 37.16232535811952 38.0 38.0 38.0 36.0 38.0 80-81 37.1602857912893 38.0 38.0 38.0 36.0 38.0 82-83 37.10848026470307 38.0 38.0 38.0 36.0 38.0 84-85 37.10063669524905 38.0 38.0 38.0 36.0 38.0 86-87 37.096650061809285 38.0 38.0 38.0 36.0 38.0 88-89 37.10358542072038 38.0 38.0 38.0 36.0 38.0 90-91 37.09366994230346 38.0 38.0 38.0 36.0 38.0 92-93 37.07675060434897 38.0 38.0 38.0 36.0 38.0 94-95 37.048707174581416 38.0 38.0 38.0 36.0 38.0 96-97 37.01530029585314 38.0 38.0 38.0 36.0 38.0 98-99 37.01931421881814 38.0 38.0 38.0 36.0 38.0 100 35.47437232054674 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 2.0 19 12.0 20 20.0 21 80.0 22 277.0 23 691.0 24 1646.0 25 3143.0 26 5515.0 27 9159.0 28 13990.0 29 20394.0 30 28087.0 31 37004.0 32 47324.0 33 64029.0 34 95567.0 35 179450.0 36 608178.0 37 3329370.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.954513347499436 21.50579856933294 14.385587027370525 24.154101055797096 2 14.014268566081572 21.04834038240045 41.70744803666565 23.229943014852324 3 17.36568959848927 26.169429342108728 31.444026822138277 25.02085423726373 4 12.392883696898668 18.574529543396505 39.55055709478983 29.482029664915 5 13.18202050579029 37.533175301058684 35.923748452344356 13.361055740806666 6 29.16472113378643 38.694618132869 19.115600319626207 13.025060413718364 7 25.726421660413585 33.0971765826774 23.812939910768392 17.36346184614062 8 23.70080970921981 37.155938838971984 21.690521993878857 17.452729457929347 9 25.12205961608349 17.108778593746308 21.935244327381024 35.833917462789174 10-11 23.566892597152716 27.140743017676854 29.62682596451758 19.665538420652855 12-13 24.379995636755265 24.743558110195217 29.526137894960563 21.350308358088952 14-15 21.63932869495792 26.22315417778949 27.145882449834506 24.991634677418084 16-17 21.33826709220487 29.197732373134567 27.894204716039212 21.569795818621355 18-19 21.275777513697864 28.466725818367077 29.51223924890092 20.74525741903414 20-21 22.048466776682904 27.61254527143395 29.376619288125866 20.962368663757278 22-23 21.801915739420732 27.58703022133508 29.171076452922833 21.439977586321355 24-25 21.5558586009871 27.667221458107132 29.338763695417363 21.438156245488404 26-27 21.564742291244656 27.86414584740041 29.184424938104886 21.386686923250057 28-29 21.437205402917115 27.874821154824502 29.235356029253772 21.452617413004607 30-31 21.754690524870416 27.642051211080776 29.17915448500977 21.42410377903904 32-33 21.521281675247895 27.820461453604047 29.14928761367383 21.50896925747423 34-35 21.66281934698367 27.883648623201886 29.13157833315847 21.32195369665597 36-37 21.657332858676345 27.76370094060384 29.094166908699243 21.484799292020572 38-39 21.504537948787135 27.881029992860316 29.19101439641719 21.423417661935357 40-41 21.77178560397102 27.72604329247701 29.0630755130811 21.43909559047087 42-43 21.7645314773509 27.764256116845726 28.944127124611775 21.5270852811916 44-45 21.748263221295904 27.93188115549175 28.785753956096706 21.53410166711564 46-47 21.77764909018211 27.850733987703457 28.607701244084183 21.763915678030248 48-49 21.75295066630562 27.882645484857793 28.69169982181577 21.672704027020817 50-51 21.736378241220365 28.02431121721244 28.5654159722535 21.673894569313696 52-53 21.883547182717866 27.985882394517652 28.459063264779775 21.671507157984703 54-55 21.83999320917805 27.927621156044747 28.452726829674035 21.779658805103168 56-57 21.86356703848989 28.009029418658614 28.414138251536407 21.713265291315086 58-59 21.792942952886136 28.079710549309965 28.49665903009316 21.63068746771074 60-61 21.891042849215648 28.102122456952998 28.424222254988734 21.58261243884262 62-63 21.820821805649846 28.158766044221156 28.366481900028766 21.65393025010023 64-65 21.83492841133233 28.144026760321346 28.339236781857156 21.681808046489166 66-67 21.855634105669086 28.186921598656706 28.216665661076874 21.740778634597337 68-69 21.85593328202431 28.12080138508442 28.261689501256072 21.761575831635202 70-71 21.839373674289376 27.938133373262257 28.317767945046768 21.9047250074016 72-73 21.930176535828924 27.893213598847254 28.262232168366175 21.914377696957647 74-75 21.827473620215436 27.97028447840111 28.235563509775023 21.96667839160843 76-77 21.940828625565217 27.907366481140077 28.174320003394847 21.97748488989986 78-79 21.904396461930236 27.94616560566755 28.104468442505002 22.044969489897206 80-81 21.905653567561583 27.929994862467233 28.113986706187276 22.050364863783912 82-83 21.957747460341743 27.89136251058798 28.201041044031292 21.949848985038983 84-85 22.042976464188314 27.89273531151089 28.14000633841383 21.924281885886966 86-87 21.89227870723801 27.921456386259752 28.178843195107923 22.007421711394315 88-89 21.98441856648465 27.903941059033254 28.12357319595093 21.988067178531164 90-91 22.02698434825664 27.915591991517903 28.11329944117856 21.9441242190469 92-93 22.05787710852707 27.886587352455177 28.111009688572718 21.944525850445036 94-95 21.928996342748224 27.968191487223265 28.131277957047097 21.97153421298141 96-97 22.023507651471817 28.106041157156564 28.179395599033754 21.691055592337868 98-99 23.104628634090588 29.94044259368767 28.441624710348584 18.51330406187316 100 21.962761926388392 30.901123899833934 22.388601773397937 24.74751240037974 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 882.0 1 820.0 2 989.0 3 1356.0 4 1689.0 5 2178.0 6 2686.0 7 3392.0 8 4256.0 9 4898.5 10 5206.5 11 5439.5 12 6053.0 13 7283.0 14 9626.5 15 12196.5 16 13844.5 17 14617.5 18 14589.5 19 14033.5 20 13461.0 21 13700.0 22 15338.0 23 18519.5 24 23822.0 25 31271.0 26 40832.5 27 51498.5 28 62120.5 29 73422.0 30 84316.5 31 94281.5 32 105387.5 33 116552.0 34 126765.0 35 136838.0 36 147328.0 37 156840.0 38 164037.5 39 170423.0 40 177250.5 41 182437.0 42 185377.0 43 189717.0 44 192849.0 45 194066.5 46 193369.0 47 190489.5 48 186638.5 49 180494.5 50 173868.0 51 166210.0 52 156542.0 53 146270.0 54 135493.5 55 123960.5 56 112370.5 57 100444.0 58 88580.0 59 76469.5 60 63507.0 61 51068.5 62 40003.0 63 30775.5 64 23041.0 65 17002.5 66 12727.5 67 9723.5 68 7433.5 69 5414.5 70 3907.5 71 2859.5 72 2044.5 73 1385.0 74 971.0 75 679.5 76 430.5 77 262.0 78 153.0 79 97.0 80 64.5 81 42.0 82 31.5 83 21.0 84 11.0 85 9.0 86 9.5 87 8.5 88 5.5 89 2.5 90 1.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0073583335152289375 3 0.0 4 0.003892940972888704 5 0.00276781352407694 6 0.0 7 0.0 8 0.0 9 1.350152938574117E-4 10-11 5.063073519652938E-4 12-13 1.1251274488117641E-5 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0010239075665756513 24-25 0.0015303322542615534 26-27 0.0 28-29 0.0020939180798455995 30-31 0.00299766272462749 32-33 6.212649270194442E-4 34-35 3.3990247744718734E-5 36-37 0.001206354712442593 38-39 0.0025310079974126456 40-41 0.0015564877059377352 42-43 0.0 44-45 0.0 46-47 0.0014052047129385226 48-49 5.59912548807696E-4 50-51 0.001561466841951329 52-53 0.0023478766541789485 54-55 0.0018171948341419444 56-57 0.0020413664464286416 58-59 0.00171131716361829 60-61 8.254090933819075E-4 62-63 6.81030954748646E-4 64-65 0.003535965796272151 66-67 0.0025673973907540315 68-69 9.072823536563284E-5 70-71 0.003232777378515956 72-73 0.010218623010805566 74-75 0.012568482888050575 76-77 0.005024659899226606 78-79 0.004571714070307248 80-81 3.161125740098564E-4 82-83 1.2493179071259845E-4 84-85 5.606731778577266E-5 86-87 0.001642445783006293 88-89 0.004463984870525124 90-91 6.073480436885692E-4 92-93 0.0010231472447740928 94-95 0.002438699590786209 96-97 0.0024320774805839146 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 34.0 20-21 105.0 22-23 249.0 24-25 381.0 26-27 1150.0 28-29 2980.0 30-31 9797.0 32-33 12387.0 34-35 17309.0 36-37 26374.0 38-39 29325.0 40-41 28967.0 42-43 32929.0 44-45 37972.0 46-47 37938.0 48-49 35059.0 50-51 32017.0 52-53 30976.0 54-55 33742.0 56-57 33831.0 58-59 33807.0 60-61 33768.0 62-63 33246.0 64-65 35322.0 66-67 37091.0 68-69 37404.0 70-71 38648.0 72-73 34987.0 74-75 35322.0 76-77 36724.0 78-79 37070.0 80-81 36372.0 82-83 34724.0 84-85 35650.0 86-87 36488.0 88-89 36773.0 90-91 37100.0 92-93 37094.0 94-95 43105.0 96-97 133866.0 98-99 291754.0 100-101 2924104.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.69851712054724 #Duplication Level Percentage of deduplicated Percentage of total 1 91.59302250087323 81.24165274416373 2 6.239272585511654 11.06828452491533 3 1.3494063336347544 3.5907102235943142 4 0.4228505088175667 1.500248523831482 5 0.16828561896179978 0.7463342427312545 6 0.08297083214175038 0.4415633865138659 7 0.045561865747144686 0.28288889503120307 8 0.02957340745337002 0.20984939098525282 9 0.01867769674725032 0.14910156042375347 >10 0.04921047121097116 0.6277685616128603 >50 7.164596377873299E-4 0.04196428815703474 >100 4.1733533094781236E-4 0.08045039235976352 >500 3.438393181461325E-5 0.01918326568015297 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 4.5005097952470564E-5 0.0 3 0.0 0.0 0.0 4.5005097952470564E-5 0.0 4 0.0 0.0 0.0 4.5005097952470564E-5 0.0 5 0.0 0.0 0.0 6.750764692870585E-5 0.0 6 0.0 0.0 0.0 6.750764692870585E-5 0.0 7 0.0 0.0 0.0 6.750764692870585E-5 0.0 8 0.0 4.5005097952470564E-5 0.0 6.750764692870585E-5 0.0 9 0.0 1.350152938574117E-4 0.0 9.001019590494113E-5 0.0 10-11 2.2502548976235282E-5 1.350152938574117E-4 0.0 9.001019590494113E-5 0.0 12-13 4.5005097952470564E-5 1.350152938574117E-4 0.0 1.1251274488117642E-4 0.0 14-15 6.750764692870585E-5 2.2502548976235283E-4 0.0 1.350152938574117E-4 1.1251274488117641E-5 16-17 1.1251274488117642E-4 2.700305877148234E-4 0.0 1.350152938574117E-4 2.2502548976235282E-5 18-19 1.350152938574117E-4 2.925331366910587E-4 0.0 1.350152938574117E-4 2.2502548976235282E-5 20-21 1.350152938574117E-4 3.262869601554116E-4 0.0 1.5751784283364698E-4 2.2502548976235282E-5 22-23 1.6876911732176462E-4 3.9379460708411745E-4 0.0 1.9127166629799992E-4 2.2502548976235282E-5 24-25 2.0252294078611753E-4 4.050458815722351E-4 0.0 2.0252294078611756E-4 2.2502548976235282E-5 26-27 2.2502548976235283E-4 4.050458815722351E-4 0.0 2.5877931322670575E-4 2.2502548976235282E-5 28-29 2.2502548976235283E-4 4.275484305484704E-4 0.0 5.963175478702349E-4 2.2502548976235282E-5 30-31 2.4752803873858814E-4 5.400611754296468E-4 0.0 0.0015751784283364698 2.2502548976235282E-5 32-33 2.700305877148234E-4 5.400611754296468E-4 0.0 0.004207976658555998 2.2502548976235282E-5 34-35 2.812818622029411E-4 6.525739203108233E-4 0.0 0.007448343711133879 2.2502548976235282E-5 36-37 2.925331366910587E-4 7.313328417276467E-4 0.0 0.012252637917560111 2.2502548976235282E-5 38-39 2.925331366910587E-4 7.425841162157644E-4 0.0 0.023391399660796577 2.2502548976235282E-5 40-41 2.925331366910587E-4 7.650866651919996E-4 0.0 0.035182735324343864 2.2502548976235282E-5 42-43 2.925331366910587E-4 7.988404886563526E-4 0.0 0.0438124628567301 2.2502548976235282E-5 44-45 2.925331366910587E-4 8.775994100731761E-4 0.0 0.05302725666249844 2.2502548976235282E-5 46-47 3.037844111791763E-4 9.563583314899995E-4 0.0 0.06346843938747163 2.2502548976235282E-5 48-49 3.1503568566729396E-4 9.676096059781172E-4 0.0 0.07331330456457455 2.2502548976235282E-5 50-51 3.1503568566729396E-4 0.001035117252906823 0.0 0.08234807797853302 2.2502548976235282E-5 52-53 3.1503568566729396E-4 0.0010576198018830583 0.0 0.10312918195808629 2.2502548976235282E-5 54-55 3.1503568566729396E-4 0.0010801223508592936 0.0 0.1300984869061043 2.2502548976235282E-5 56-57 3.1503568566729396E-4 0.001102624899835529 0.0 0.1621196140992871 2.2502548976235282E-5 58-59 3.1503568566729396E-4 0.001102624899835529 0.0 0.18862761679329226 3.3753823464352926E-5 60-61 3.1503568566729396E-4 0.001102624899835529 0.0 0.1991700609886585 4.5005097952470564E-5 62-63 3.1503568566729396E-4 0.001102624899835529 0.0 0.2112876836123612 4.5005097952470564E-5 64-65 3.1503568566729396E-4 0.0012151376447167052 0.0 0.21762215114917144 4.5005097952470564E-5 66-67 3.1503568566729396E-4 0.0012376401936929405 0.0 0.22379910084314802 5.625637244058821E-5 68-69 3.1503568566729396E-4 0.0012938965661335286 0.0 0.22967226612594543 6.750764692870585E-5 70-71 3.1503568566729396E-4 0.0013389016640859993 0.0 0.23484785239047953 6.750764692870585E-5 72-73 3.1503568566729396E-4 0.001350152938574117 0.0 0.2385157678736059 1.1251274488117642E-4 74-75 3.1503568566729396E-4 0.0013726554875503523 0.0 0.24181239129862436 1.1251274488117642E-4 76-77 3.1503568566729396E-4 0.001473916957943411 0.0 0.24492899433183296 1.1251274488117642E-4 78-79 3.1503568566729396E-4 0.0014851682324315287 0.0 0.24714549540599212 1.1251274488117642E-4 80-81 3.1503568566729396E-4 0.0014851682324315287 0.0 0.2475842951110287 1.1251274488117642E-4 82-83 3.1503568566729396E-4 0.0014851682324315287 0.0 0.24829312540378012 1.1251274488117642E-4 84-85 3.1503568566729396E-4 0.0014964195069196464 0.0 0.24855190471700683 1.1251274488117642E-4 86-87 3.1503568566729396E-4 0.0015301733303839991 0.0 0.24872067383432858 1.1251274488117642E-4 88 3.1503568566729396E-4 0.0015751784283364698 0.0 0.24874317638330481 1.1251274488117642E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5000 0.0 49.04725 1 GTATCAA 9275 0.0 36.952522 1 TCAACGC 10370 0.0 32.470684 4 ATCAACG 10405 0.0 32.36146 3 CAACGCA 10795 0.0 31.191961 5 AACGCAG 11290 0.0 30.086954 6 TATCAAC 11405 0.0 29.901937 2 ACGCAGA 12870 0.0 26.227924 7 CGCAGAG 12960 0.0 26.045786 8 GCAGAGT 15705 0.0 21.384954 9 TGGTATC 2510 0.0 20.015682 2 GAGTACT 9235 0.0 19.474176 12-13 CAGAGTA 15385 0.0 18.56497 10-11 TACATGG 11015 0.0 18.553202 2 GTGGTAT 2760 0.0 18.356928 1 GTACATG 11405 0.0 18.292072 1 AGAGTAC 14225 0.0 17.774746 10-11 ACATGGG 11130 0.0 17.670162 3 GTACTTT 10450 0.0 17.210146 14-15 AGTACTT 10050 0.0 16.073668 12-13 >>END_MODULE