##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140065_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4950636 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.145774805499737 31.0 18.0 33.0 18.0 33.0 2 30.211972562717193 32.0 27.0 33.0 25.0 33.0 3 31.304798211785315 33.0 31.0 33.0 28.0 33.0 4 32.43584299067837 33.0 33.0 33.0 31.0 34.0 5 32.912732222688156 33.0 33.0 34.0 32.0 34.0 6 37.072749844666426 38.0 37.0 38.0 36.0 38.0 7 37.18030935823195 38.0 38.0 38.0 36.0 38.0 8 37.41311479979542 38.0 38.0 38.0 37.0 38.0 9 37.46082685133789 38.0 38.0 38.0 37.0 38.0 10-11 37.48414153252229 38.0 38.0 38.0 37.0 38.0 12-13 37.50519064621192 38.0 38.0 38.0 37.0 38.0 14-15 37.512819968989845 38.0 38.0 38.0 37.0 38.0 16-17 37.45075370114062 38.0 38.0 38.0 37.0 38.0 18-19 37.48423808577322 38.0 38.0 38.0 37.0 38.0 20-21 37.507967748285516 38.0 38.0 38.0 37.0 38.0 22-23 37.51561857935988 38.0 38.0 38.0 37.0 38.0 24-25 37.51062778146836 38.0 38.0 38.0 37.0 38.0 26-27 37.4779325791136 38.0 38.0 38.0 37.0 38.0 28-29 37.4484437342078 38.0 38.0 38.0 37.0 38.0 30-31 37.35669955438076 38.0 38.0 38.0 37.0 38.0 32-33 37.415523848344726 38.0 38.0 38.0 37.0 38.0 34-35 37.41468229651943 38.0 38.0 38.0 37.0 38.0 36-37 37.3937083028568 38.0 38.0 38.0 37.0 38.0 38-39 37.352496940408585 38.0 38.0 38.0 37.0 38.0 40-41 37.37333705623324 38.0 38.0 38.0 37.0 38.0 42-43 37.35403257581082 38.0 38.0 38.0 37.0 38.0 44-45 37.322445841932634 38.0 38.0 38.0 37.0 38.0 46-47 37.29662310734853 38.0 38.0 38.0 37.0 38.0 48-49 37.270991305154766 38.0 38.0 38.0 37.0 38.0 50-51 37.229874060643326 38.0 38.0 38.0 37.0 38.0 52-53 37.20789442979432 38.0 38.0 38.0 37.0 38.0 54-55 37.19336197350617 38.0 38.0 38.0 37.0 38.0 56-57 37.18372183353216 38.0 38.0 38.0 37.0 38.0 58-59 37.17132659937908 38.0 38.0 38.0 37.0 38.0 60-61 37.16698956373008 38.0 38.0 38.0 36.0 38.0 62-63 37.17108664179744 38.0 38.0 38.0 36.5 38.0 64-65 37.17397321523031 38.0 38.0 38.0 36.0 38.0 66-67 37.14971103227197 38.0 38.0 38.0 36.0 38.0 68-69 37.147503117797754 38.0 38.0 38.0 36.0 38.0 70-71 37.124776227954456 38.0 38.0 38.0 36.0 38.0 72-73 37.11244327214605 38.0 38.0 38.0 36.0 38.0 74-75 37.103724324127434 38.0 38.0 38.0 36.0 38.0 76-77 37.10920489128425 38.0 38.0 38.0 36.0 38.0 78-79 37.095404801885266 38.0 38.0 38.0 36.0 38.0 80-81 37.09576340001544 38.0 38.0 38.0 36.0 38.0 82-83 37.04800805065658 38.0 38.0 38.0 36.0 38.0 84-85 37.037373585199816 38.0 38.0 38.0 36.0 38.0 86-87 37.032073292035676 38.0 38.0 38.0 36.0 38.0 88-89 37.03860522559154 38.0 38.0 38.0 36.0 38.0 90-91 37.02941257498731 38.0 38.0 38.0 36.0 38.0 92-93 37.01429409001451 38.0 38.0 38.0 36.0 38.0 94-95 36.986273542564746 38.0 38.0 38.0 36.0 38.0 96-97 36.95798418517211 38.0 38.0 38.0 36.0 38.0 98-99 36.9619683739657 38.0 38.0 38.0 35.5 38.0 100 35.41374334725821 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 6.0 19 12.0 20 41.0 21 119.0 22 295.0 23 928.0 24 1901.0 25 3671.0 26 6634.0 27 10917.0 28 17041.0 29 24950.0 30 34645.0 31 45262.0 32 59337.0 33 78788.0 34 117321.0 35 217672.0 36 703040.0 37 3628053.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.40984552287827 21.756517748426667 14.343672206964921 24.489964521730137 2 13.759968938948752 20.76623993409627 42.255695721287665 23.21809540566731 3 17.250834034253376 26.254384285170634 31.545542835304392 24.949238845271598 4 12.146885180201753 18.82698623708938 39.22786057672399 29.798268005984873 5 13.046224589848018 37.58438067242745 36.05448923963364 13.314905498090893 6 28.956521949907042 38.757828287113014 19.042805813232885 13.242843949747062 7 25.52987131350396 32.88997615659887 23.518614578005735 18.061537951891435 8 23.445937047280392 37.465044895241746 21.76595087984655 17.32306717763132 9 24.737442029999873 17.097673200998422 21.669927873695038 36.49495689530667 10-11 23.44623013818997 27.16101290496883 29.571340919936674 19.821416036904523 12-13 24.37644375389344 24.5149411105967 29.50545142078715 21.603163714722715 14-15 21.556705037494172 26.04035117912123 26.839622222276088 25.56332156110851 16-17 21.437164841042648 29.298811304244545 27.542410712482194 21.721613142230613 18-19 21.380788246197056 28.266913584436427 29.254170575255383 21.09812759411114 20-21 22.037201290111202 27.43473947805318 29.10435159024769 21.423707641587928 22-23 21.714625252781737 27.7553587909867 28.940945782951218 21.58907017328035 24-25 21.644534057673265 27.887259043239393 29.133642494932488 21.334564404154854 26-27 21.78629089648801 27.938773669271587 29.054404941938543 21.220530492301858 28-29 21.472139161770524 27.67616127369606 29.325199073109015 21.5265004914244 30-31 21.968936753523145 27.776429976735685 29.00143448953763 21.25319878020354 32-33 21.7097206609735 27.571477951205832 29.135987622753323 21.582813765067343 34-35 21.424191093388092 27.902582796204918 29.49594839667764 21.177277713729346 36-37 21.785988759655243 27.716863309182443 29.063630003246523 21.43351792791579 38-39 21.412062142917566 27.58713922550967 29.352926127501256 21.647872504071504 40-41 21.61885615162784 27.47908605316069 29.37596831455449 21.526089480656978 42-43 21.808417841718633 27.456318568425004 29.19470282628509 21.54056076357127 44-45 21.596883190940193 27.754438114007883 29.06348791492427 21.585190780127654 46-47 21.93293726980737 27.465014604348205 28.66826045367601 21.93378767216842 48-49 21.743583398633508 27.533461712947837 28.749588899710567 21.973365988708093 50-51 21.525206674308375 27.70284298416769 28.905571087167658 21.866379254356275 52-53 21.678557640245643 27.67664238324235 29.090807977215793 21.55399199929622 54-55 21.697006940841238 27.63943560867145 28.765638516519076 21.89791893396823 56-57 21.96871009231268 27.94925615709295 28.343665480419318 21.73836827017506 58-59 21.52534357593326 28.317509220932525 28.842153672035302 21.314993531098914 60-61 21.890563378605812 28.7267164915129 28.149649934843413 21.233070195037875 62-63 21.547964507373173 29.00917545017479 28.076449174802086 21.36641086764995 64-65 21.509719547538573 29.007942161082763 28.09953498337118 21.382803308007485 66-67 21.555150226310918 28.894210872401622 28.046678855127166 21.503960046160298 68-69 21.63945685418433 28.672275771299393 28.133407699802692 21.554859674713583 70-71 21.725143519951047 28.30173675994959 28.248759848179716 21.724359871919642 72-73 21.827274064836157 27.96870292652509 28.359618577864342 21.844404430774407 74-75 21.774615798970363 27.99290026520983 28.349547141709174 21.882936794110634 76-77 21.858564124270014 27.916266121557364 28.294332435566293 21.93083731860633 78-79 21.83293766378983 27.978661379899027 28.252253999494787 21.93614695681635 80-81 21.864619677983804 27.98470507008667 28.23904088587121 21.91163436605832 82-83 21.94592200417439 27.955443625651803 28.31030565325871 21.788328716915096 84-85 22.0132904796277 27.930067253325447 28.21234499231257 21.84429727473428 86-87 21.858694989524647 27.930955351252706 28.29108744925265 21.91926220997 88-89 21.936997171558765 27.916354951372412 28.215839170910662 21.93080870615816 90-91 21.9578186656108 27.975300239399115 28.228642117563602 21.83823897742648 92-93 21.99681319491665 27.911035385610166 28.21877565908547 21.873375760387713 94-95 21.906941423161825 28.05182195398448 28.192449576284538 21.848787046569154 96-97 22.015348352921578 28.14366546784975 28.225647897986928 21.615338281241744 98-99 23.070374869812444 30.037776552703832 28.46560614285469 18.42624243462903 100 21.920511585718113 30.958241091772155 22.530262798321893 24.590984524187835 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 621.0 1 631.0 2 950.0 3 1430.5 4 1863.0 5 2436.0 6 2973.5 7 3826.0 8 4966.5 9 5759.5 10 6021.5 11 6283.0 12 7000.5 13 8320.0 14 10736.5 15 13381.0 16 15289.5 17 16358.0 18 16224.0 19 15358.0 20 14656.5 21 14791.0 22 16382.5 23 19941.0 24 25532.5 25 33034.5 26 42991.5 27 54846.5 28 66824.5 29 78993.5 30 90546.5 31 102015.0 32 114543.5 33 126624.0 34 137403.5 35 147527.5 36 158955.5 37 169799.5 38 177508.0 39 183857.0 40 190593.5 41 195574.5 42 201676.0 43 220757.0 44 229934.0 45 223630.0 46 216772.5 47 208048.0 48 202126.5 49 194917.5 50 187831.0 51 179667.5 52 168571.5 53 156920.5 54 145470.0 55 133727.5 56 121364.0 57 108832.5 58 96542.0 59 83422.5 60 69040.0 61 55369.0 62 43456.5 63 33247.0 64 24744.0 65 18137.0 66 13249.5 67 9953.5 68 7569.0 69 5409.5 70 3872.0 71 2830.0 72 1939.5 73 1321.0 74 879.5 75 558.5 76 348.0 77 202.0 78 127.0 79 82.0 80 54.5 81 31.0 82 19.0 83 16.5 84 12.5 85 8.0 86 6.0 87 5.0 88 3.0 89 2.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007776778579560282 3 0.0 4 0.003171309706470037 5 0.0031107114318241133 6 0.0 7 0.0 8 0.0 9 3.0299137322962143E-4 10-11 4.746864847264069E-4 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 8.888061132084466E-4 24-25 0.001393874346469892 26-27 0.0 28-29 0.001909683103750355 30-31 0.0028314818307350275 32-33 6.078364709176589E-4 34-35 1.0154775018928501E-5 36-37 0.001192211496281472 38-39 0.002406692777064361 40-41 0.001493058769779296 42-43 0.0 44-45 0.0 46-47 0.0013228306181534985 48-49 4.758694531466867E-4 50-51 0.001671551607665331 52-53 0.00233588605676396 54-55 0.0016932013973548958 56-57 0.0019223745170034027 58-59 0.001750242764140895 60-61 6.940879898649933E-4 62-63 7.435209913731589E-4 64-65 0.003320957826854652 66-67 0.0022339495799836313 68-69 9.120981381112682E-5 70-71 0.0027196456716551036 72-73 0.010053007723301996 74-75 0.011807948833320502 76-77 0.004961191730476731 78-79 0.004082233175482994 80-81 3.019171983629808E-4 82-83 8.527108836240895E-5 84-85 4.913662044220992E-5 86-87 0.0019205685081036218 88-89 0.004312986828388254 90-91 4.542417663948156E-4 92-93 8.660413593334233E-4 94-95 0.0018904316125433096 96-97 0.0019308028943779063 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 40.0 20-21 87.0 22-23 219.0 24-25 330.0 26-27 988.0 28-29 2541.0 30-31 8520.0 32-33 10765.0 34-35 14971.0 36-37 23171.0 38-39 26779.0 40-41 26035.0 42-43 29723.0 44-45 35006.0 46-47 34909.0 48-49 32674.0 50-51 30306.0 52-53 29552.0 54-55 32089.0 56-57 32859.0 58-59 32598.0 60-61 32965.0 62-63 33164.0 64-65 37118.0 66-67 44521.0 68-69 47148.0 70-71 59277.0 72-73 36773.0 74-75 33918.0 76-77 35823.0 78-79 36355.0 80-81 36216.0 82-83 34344.0 84-85 34699.0 86-87 35567.0 88-89 36547.0 90-91 37071.0 92-93 36879.0 94-95 44403.0 96-97 149018.0 98-99 334441.0 100-101 3370227.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.5703149416859 #Duplication Level Percentage of deduplicated Percentage of total 1 90.27012928201879 78.1471352177107 2 7.057812592460709 12.219941178574405 3 1.6011449681561818 4.158348724817289 4 0.5117793058174543 1.7721958274101761 5 0.22130323743512598 0.9579145481186774 6 0.11951513131146978 0.620787753475853 7 0.06370852059016614 0.38606866843716947 8 0.03988804842982626 0.2762496731983423 9 0.029243285759836864 0.22784404123429164 >10 0.08344752703962406 1.0651902042312238 >50 0.0016073468087161723 0.09299225333374711 >100 4.20754172050797E-4 0.07533190945809622 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 2.019942488197476E-5 0.0 2 0.0 2.019942488197476E-5 0.0 4.039884976394952E-5 0.0 3 0.0 2.019942488197476E-5 0.0 4.039884976394952E-5 0.0 4 0.0 4.039884976394952E-5 0.0 4.039884976394952E-5 0.0 5 0.0 4.039884976394952E-5 0.0 4.039884976394952E-5 0.0 6 0.0 4.039884976394952E-5 0.0 4.039884976394952E-5 0.0 7 0.0 4.039884976394952E-5 0.0 4.039884976394952E-5 0.0 8 0.0 4.039884976394952E-5 0.0 6.059827464592428E-5 0.0 9 0.0 8.079769952789905E-5 0.0 6.059827464592428E-5 0.0 10-11 0.0 8.079769952789905E-5 0.0 2.019942488197476E-4 0.0 12-13 0.0 8.079769952789905E-5 0.0 2.2219367370172237E-4 0.0 14-15 0.0 1.6159539905579806E-4 0.0 2.625925234656719E-4 2.019942488197476E-5 16-17 4.039884976394952E-5 1.8179482393777284E-4 0.0 2.827919483476466E-4 4.039884976394952E-5 18-19 4.039884976394952E-5 1.9189453637876022E-4 0.0 2.827919483476466E-4 4.039884976394952E-5 20-21 4.039884976394952E-5 2.019942488197476E-4 0.0 2.827919483476466E-4 5.0498562204936905E-5 22-23 4.039884976394952E-5 2.4239309858369712E-4 0.0 2.827919483476466E-4 6.059827464592428E-5 24-25 6.059827464592428E-5 2.625925234656719E-4 0.0 2.827919483476466E-4 8.079769952789905E-5 26-27 6.059827464592428E-5 2.9289166078863403E-4 0.0 3.0299137322962143E-4 8.079769952789905E-5 28-29 6.059827464592428E-5 3.231907981115962E-4 0.0 4.544870598444321E-4 8.079769952789905E-5 30-31 6.059827464592428E-5 3.635896478755457E-4 0.0 0.0010200709565397256 8.079769952789905E-5 32-33 6.059827464592428E-5 3.8378907275752043E-4 0.0 0.002514828397805858 8.079769952789905E-5 34-35 7.069798708691166E-5 4.0398849763949524E-4 0.0 0.004413574336711485 9.089741196888642E-5 36-37 8.079769952789905E-5 4.2418792252147E-4 0.0 0.006918303022076355 1.009971244098738E-4 38-39 8.079769952789905E-5 4.645867722854195E-4 0.0 0.010998586848235258 1.009971244098738E-4 40-41 8.079769952789905E-5 6.059827464592429E-4 0.0 0.015088970386835147 1.009971244098738E-4 42-43 1.009971244098738E-4 6.160824589002302E-4 0.0 0.019209653062757997 1.009971244098738E-4 44-45 1.009971244098738E-4 7.271792957510914E-4 0.0 0.02381512193584824 1.009971244098738E-4 46-47 1.009971244098738E-4 8.281764201609652E-4 0.0 0.028774080744373046 1.009971244098738E-4 48-49 1.009971244098738E-4 8.281764201609652E-4 0.0 0.033632042428487975 1.009971244098738E-4 50-51 1.009971244098738E-4 9.190738321298516E-4 0.0 0.03884349404803747 1.009971244098738E-4 52-53 1.009971244098738E-4 9.29173544570839E-4 0.0 0.043974147968059055 1.1109683685086119E-4 54-55 1.009971244098738E-4 9.897718192167634E-4 0.0 0.048347323455006586 1.2119654929184856E-4 56-57 1.009971244098738E-4 0.001009971244098738 0.0 0.05332648168841336 1.2119654929184856E-4 58-59 1.009971244098738E-4 0.001009971244098738 0.0 0.05803294768591349 1.3129626173283594E-4 60-61 1.009971244098738E-4 0.0010402703814217 0.0 0.062274826911128185 1.413959741738233E-4 62-63 1.009971244098738E-4 0.001060469806303675 0.0 0.06662780297319375 1.413959741738233E-4 64-65 1.009971244098738E-4 0.0011715666431545361 0.0 0.0713039698333709 1.413959741738233E-4 66-67 1.3129626173283594E-4 0.0011816663555955236 0.0 0.07592963813134312 1.413959741738233E-4 68-69 1.413959741738233E-4 0.0012018657804774983 0.0 0.0805856055666383 1.413959741738233E-4 70-71 1.413959741738233E-4 0.001222065205359473 0.0 0.08469618853012018 1.615953990557981E-4 72-73 1.6159539905579806E-4 0.0012321649178004604 0.0 0.08806949248540996 1.615953990557981E-4 74-75 1.8179482393777284E-4 0.0012422646302414479 0.0 0.09058432088321582 1.615953990557981E-4 76-77 1.8179482393777284E-4 0.0013028629048873722 0.0 0.0931496478432266 1.615953990557981E-4 78-79 1.8179482393777284E-4 0.0013331620422103341 0.0 0.09470500355913866 1.615953990557981E-4 80-81 1.8179482393777284E-4 0.001353361467092309 0.0 0.09528068716827495 1.8179482393777284E-4 82-83 1.8179482393777284E-4 0.001353361467092309 0.0 0.0957957725027653 2.019942488197476E-4 84-85 1.8179482393777284E-4 0.001353361467092309 0.0 0.09597756732670307 2.019942488197476E-4 86-87 1.8179482393777284E-4 0.001353361467092309 0.0 0.09606846473867196 2.019942488197476E-4 88 1.8179482393777284E-4 0.0013937603168562584 0.0 0.09608866416355394 2.019942488197476E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 5500 0.0 49.518867 1 GGTATCA 5665 0.0 46.555164 1 GTATCAA 9970 0.0 37.77745 1 TATACAC 7745 0.0 37.666294 3 TTATACA 8290 0.0 33.892956 2 ATCAACG 11840 0.0 31.117167 3 TCAACGC 11935 0.0 30.942629 4 CAACGCA 12145 0.0 30.40729 5 TATCAAC 12590 0.0 29.6763 2 AACGCAG 12640 0.0 29.2835 6 TACACAT 10490 0.0 28.056898 5 ACACATC 10020 0.0 27.350563 6 ACATCTC 10090 0.0 27.160818 8 ACGCAGA 14485 0.0 25.494072 7 CGCAGAG 14680 0.0 25.126072 8 CACATCT 11580 0.0 23.66603 7 CATCTCC 11620 0.0 23.399153 9 ATACACA 13515 0.0 23.11643 4 GTGGTAT 2885 0.0 23.003359 1 TGGTATC 2790 0.0 21.160831 2 >>END_MODULE