Basic Statistics
Measure | Value |
---|---|
Filename | SRR2140064_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4261578 |
Sequences flagged as poor quality | 0 |
Sequence length | 19-100 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4900 | 0.0 | 50.67215 | 1 |
CTTATAC | 5020 | 0.0 | 49.885784 | 1 |
TATACAC | 7015 | 0.0 | 39.223736 | 3 |
GTATCAA | 8995 | 0.0 | 38.27496 | 1 |
TTATACA | 7335 | 0.0 | 35.304573 | 2 |
ATCAACG | 10540 | 0.0 | 32.379215 | 3 |
TCAACGC | 10565 | 0.0 | 32.343353 | 4 |
CAACGCA | 10850 | 0.0 | 31.453726 | 5 |
TATCAAC | 11125 | 0.0 | 30.870115 | 2 |
AACGCAG | 11215 | 0.0 | 30.505402 | 6 |
ACATCTC | 9145 | 0.0 | 28.594229 | 8 |
ACACATC | 9255 | 0.0 | 27.88564 | 6 |
TACACAT | 9855 | 0.0 | 27.184093 | 5 |
ACGCAGA | 13040 | 0.0 | 26.203337 | 7 |
CGCAGAG | 13075 | 0.0 | 26.198444 | 8 |
CACATCT | 10145 | 0.0 | 25.35519 | 7 |
CATCTCC | 10240 | 0.0 | 24.95333 | 9 |
ATACACA | 12380 | 0.0 | 23.087461 | 4 |
TATGCCG | 6610 | 0.0 | 22.47889 | 42-43 |
CGTATGC | 6715 | 0.0 | 21.939646 | 40-41 |