##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140064_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4261578 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.389010361889422 31.0 18.0 33.0 18.0 33.0 2 30.273088278567236 32.0 28.0 33.0 25.0 33.0 3 31.331362936452177 33.0 31.0 33.0 28.0 33.0 4 32.431797798843526 33.0 33.0 33.0 31.0 34.0 5 32.909842081970574 33.0 33.0 34.0 32.0 34.0 6 37.08701072701239 38.0 37.0 38.0 36.0 38.0 7 37.19504441781894 38.0 38.0 38.0 36.0 38.0 8 37.435697293350024 38.0 38.0 38.0 37.0 38.0 9 37.48656577446195 38.0 38.0 38.0 37.0 38.0 10-11 37.5072842735719 38.0 38.0 38.0 37.0 38.0 12-13 37.52608317857845 38.0 38.0 38.0 37.0 38.0 14-15 37.533216334418846 38.0 38.0 38.0 37.5 38.0 16-17 37.470114474028165 38.0 38.0 38.0 37.0 38.0 18-19 37.502819260846564 38.0 38.0 38.0 37.0 38.0 20-21 37.52796746229938 38.0 38.0 38.0 37.0 38.0 22-23 37.53469470485848 38.0 38.0 38.0 37.5 38.0 24-25 37.528077527203635 38.0 38.0 38.0 38.0 38.0 26-27 37.49628053292638 38.0 38.0 38.0 37.0 38.0 28-29 37.47226047247271 38.0 38.0 38.0 37.0 38.0 30-31 37.374720892307295 38.0 38.0 38.0 37.0 38.0 32-33 37.43774529500852 38.0 38.0 38.0 37.0 38.0 34-35 37.44392428048047 38.0 38.0 38.0 37.0 38.0 36-37 37.42221965453351 38.0 38.0 38.0 37.0 38.0 38-39 37.387570241453936 38.0 38.0 38.0 37.0 38.0 40-41 37.39474087665516 38.0 38.0 38.0 37.0 38.0 42-43 37.37290862889541 38.0 38.0 38.0 37.0 38.0 44-45 37.339539441825494 38.0 38.0 38.0 37.0 38.0 46-47 37.31527723963322 38.0 38.0 38.0 37.0 38.0 48-49 37.2879148424383 38.0 38.0 38.0 37.0 38.0 50-51 37.24756453837193 38.0 38.0 38.0 37.0 38.0 52-53 37.22628738627017 38.0 38.0 38.0 37.0 38.0 54-55 37.209922258634634 38.0 38.0 38.0 37.0 38.0 56-57 37.199521450635615 38.0 38.0 38.0 37.0 38.0 58-59 37.188800167826564 38.0 38.0 38.0 37.0 38.0 60-61 37.18404030868493 38.0 38.0 38.0 37.0 38.0 62-63 37.192534778863326 38.0 38.0 38.0 36.5 38.0 64-65 37.19470194808717 38.0 38.0 38.0 37.0 38.0 66-67 37.171550880564965 38.0 38.0 38.0 36.0 38.0 68-69 37.16812235685293 38.0 38.0 38.0 36.0 38.0 70-71 37.15130678401658 38.0 38.0 38.0 36.0 38.0 72-73 37.14240553058776 38.0 38.0 38.0 36.0 38.0 74-75 37.13431832182735 38.0 38.0 38.0 36.0 38.0 76-77 37.13737672888941 38.0 38.0 38.0 36.0 38.0 78-79 37.12661996767771 38.0 38.0 38.0 36.0 38.0 80-81 37.12987625289953 38.0 38.0 38.0 36.0 38.0 82-83 37.08451488657404 38.0 38.0 38.0 36.0 38.0 84-85 37.07561082874152 38.0 38.0 38.0 36.0 38.0 86-87 37.06988683508349 38.0 38.0 38.0 36.0 38.0 88-89 37.07723993264869 38.0 38.0 38.0 36.0 38.0 90-91 37.06844513927595 38.0 38.0 38.0 36.0 38.0 92-93 37.054909939494436 38.0 38.0 38.0 36.0 38.0 94-95 37.029632863891386 38.0 38.0 38.0 36.0 38.0 96-97 37.00239943230265 38.0 38.0 38.0 36.0 38.0 98-99 37.00201924431038 38.0 38.0 38.0 36.0 38.0 100 35.46558851348539 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 8.0 20 51.0 21 97.0 22 240.0 23 643.0 24 1459.0 25 2948.0 26 5263.0 27 8862.0 28 13886.0 29 20674.0 30 28170.0 31 37229.0 32 48759.0 33 65638.0 34 98049.0 35 182421.0 36 608461.0 37 3138718.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.506140683099076 21.675820552856244 14.332789403361854 24.485249360682825 2 13.753515967290534 20.79988285193583 42.23642976255458 23.21017141821906 3 17.123539684126396 26.30408266609223 31.747136858694127 24.825240791087243 4 12.19766717682214 18.98235950895541 39.13272630933256 29.687247004889887 5 12.94083772778728 37.6404926794561 36.1659414018574 13.25272819089921 6 28.82556649203652 38.81644311097908 19.041420807034388 13.316569589950014 7 25.453435323722807 32.993506161332725 23.451805880356993 18.10125263458747 8 23.481114272694292 37.3536750940614 21.84200312654139 17.323207506702918 9 24.787191205498814 16.98589159117809 21.625306342354417 36.60161086096868 10-11 23.408597704688148 27.11591728467255 29.689237921547907 19.786247089091404 12-13 24.359729316134533 24.529994944359206 29.51178982707456 21.598485912431702 14-15 21.565955146192326 26.049036295944834 26.84807130128793 25.53693725657491 16-17 21.372763797823247 29.371103849325298 27.547377990030924 21.70875436282053 18-19 21.425866193227016 28.260153867886494 29.223236087665178 21.09074385122131 20-21 22.069190383785735 27.425914838362687 29.082713573746904 21.422181204104675 22-23 21.741315889824296 27.787134434308175 28.883752309993838 21.58779736587369 24-25 21.874432368878676 27.78273603480767 29.039902561057744 21.302929035255907 26-27 21.861683470437885 27.888381042102544 28.958227205950433 21.291708281509138 28-29 21.557561891256398 27.633980820724606 29.113196228944528 21.69526105907447 30-31 21.772596265085202 27.652327350467626 29.240569204409024 21.334507180038152 32-33 21.197505922227595 27.51783439903007 29.523047961358163 21.761611717384174 34-35 21.29477480780424 27.62282480515848 29.21733380831072 21.86506657872656 36-37 21.40438656849887 27.7521798866249 29.46964978407821 21.37378376079802 38-39 21.33175258740741 27.576888333068815 29.445788250849343 21.64557082867443 40-41 21.574179397856817 27.481561310503977 29.426990763602408 21.5172685280368 42-43 21.870838455002435 27.436433892093838 29.247987894126794 21.44473975877694 44-45 21.532410976220138 27.81980790518744 29.08540023405999 21.562380884532434 46-47 21.959929499345368 27.447154295785104 28.63533279672127 21.957583408148256 48-49 21.745119603967115 27.49872449437768 28.77011778004672 21.986038121608484 50-51 21.470245244764165 27.641160355687422 28.989493504687513 21.899100894860897 52-53 21.656880216388846 27.606454291075394 29.24080175744887 21.495863735086893 54-55 21.675149593625314 27.62263332419411 28.79909780106113 21.90311928111945 56-57 21.986670990546006 27.911909856567352 28.359186138279757 21.74223301460689 58-59 21.455569975423273 28.361633629231765 28.952739473707588 21.23005692163737 60-61 21.859900873675976 28.777821847765768 28.167017005766187 21.195260272792073 62-63 21.4442466020459 29.21460783377401 28.076801808578978 21.264343755601114 64-65 21.43941973769503 29.169490736018993 28.087475803822386 21.30361372246359 66-67 21.478245303156307 29.060441983898365 28.015351191427495 21.445961521517834 68-69 21.56661327296554 28.818638735772396 28.129816830291652 21.484931160970408 70-71 21.621319005818368 28.421918334202452 28.270720776630835 21.68604188334835 72-73 21.826905381164924 28.03249009421307 28.341650979270465 21.798953545351544 74-75 21.785447345961373 28.058820311945905 28.319532969442605 21.836199372650114 76-77 21.833396852283155 28.00928788199591 28.30671183569765 21.85060343002329 78-79 21.837541585234554 28.038707254197565 28.242750618542072 21.88100054202581 80-81 21.836731376245144 27.98445543006159 28.266755707614426 21.91205748607884 82-83 21.889356077935847 27.951417180453586 28.303885899363124 21.855340842247443 84-85 21.994027992010157 27.91144917277678 28.235584003367848 21.85893883184522 86-87 21.89181566406761 27.91294432122946 28.31953897667833 21.875701038024598 88-89 21.9564833080612 27.948811557030123 28.171292038058986 21.923413096849693 90-91 21.97461400739519 27.967774254964162 28.23627181872875 21.821339918911896 92-93 21.95430692390804 27.943570696022295 28.253787339995952 21.848335040073717 94-95 21.916321089431367 28.03841071906408 28.198332140200293 21.846936051304258 96-97 22.005611582947708 28.16072964651844 28.25375563703257 21.57990313350129 98-99 23.045199670872744 30.0250185294327 28.48937808915246 18.440403710542093 100 21.870236732928362 31.01019590378152 22.514368281181135 24.605199082108985 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 585.0 1 570.0 2 844.5 3 1295.0 4 1648.5 5 2070.0 6 2530.5 7 3352.5 8 4360.0 9 5128.0 10 5507.0 11 5648.5 12 6172.0 13 7323.0 14 9509.0 15 11942.0 16 13491.0 17 14291.0 18 14340.0 19 13773.5 20 13224.0 21 13223.5 22 14529.5 23 17721.5 24 22928.5 25 30278.0 26 39388.5 27 49399.5 28 59753.0 29 70478.5 30 80038.5 31 89805.0 32 100908.5 33 111084.5 34 121133.5 35 130415.5 36 139502.0 37 148166.5 38 154739.5 39 160349.0 40 167146.5 41 172139.0 42 174293.5 43 177353.0 44 190345.0 45 207248.0 46 201287.0 47 188704.0 48 180263.5 49 168774.0 50 161678.0 51 153965.5 52 144685.5 53 135504.5 54 126358.5 55 115787.0 56 105139.5 57 94285.0 58 83004.5 59 72470.5 60 60811.0 61 49217.0 62 38601.0 63 29522.0 64 22403.0 65 16520.0 66 12038.0 67 9092.5 68 6894.5 69 5013.5 70 3755.5 71 2772.5 72 1955.0 73 1374.0 74 896.0 75 560.5 76 371.0 77 241.0 78 150.5 79 94.0 80 59.0 81 44.0 82 34.0 83 22.5 84 14.0 85 9.0 86 6.0 87 4.5 88 2.5 89 1.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007133507822689154 3 0.0 4 0.0030974441861676594 5 0.003425960993791502 6 0.0 7 0.0 8 0.0 9 1.4079291755307542E-4 10-11 5.162406976946098E-4 12-13 3.5198229388268855E-5 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0010559860328247393 24-25 0.0014197910184958874 26-27 0.0 28-29 0.0019486459023967877 30-31 0.0029964155819250573 32-33 6.712696134382052E-4 34-35 5.9057166510381716E-5 36-37 0.0011031122949337966 38-39 0.002374642446268345 40-41 0.001501108238190091 42-43 0.0 44-45 0.0 46-47 0.0013511337424648192 48-49 5.82164751138194E-4 50-51 0.0016602198955010163 52-53 0.0022383858270439514 54-55 0.0016217221574378008 56-57 0.0020690841658736244 58-59 0.0019313865900738834 60-61 7.787175456484224E-4 62-63 8.896287343801472E-4 64-65 0.003417133586966445 66-67 0.002412561313712945 68-69 1.6185332851370089E-4 70-71 0.0028537332018886523 72-73 0.009782878300162539 74-75 0.012588498895638968 76-77 0.004940118703995145 78-79 0.004516677725640467 80-81 3.740396352538111E-4 82-83 7.262000637603656E-5 84-85 8.794859463276111E-5 86-87 0.0021456112409904676 88-89 0.004647247051538418 90-91 5.886414833765381E-4 92-93 0.001082423005422177 94-95 0.0020796592686254285 96-97 0.002329895720747768 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 32.0 20-21 86.0 22-23 212.0 24-25 302.0 26-27 1056.0 28-29 2670.0 30-31 8986.0 32-33 11579.0 34-35 15698.0 36-37 23973.0 38-39 26965.0 40-41 26280.0 42-43 29572.0 44-45 34651.0 46-47 34726.0 48-49 31859.0 50-51 29617.0 52-53 29131.0 54-55 31503.0 56-57 31663.0 58-59 30857.0 60-61 30682.0 62-63 31416.0 64-65 35956.0 66-67 42846.0 68-69 44679.0 70-71 56450.0 72-73 35602.0 74-75 31967.0 76-77 32951.0 78-79 33680.0 80-81 33300.0 82-83 31727.0 84-85 31733.0 86-87 32913.0 88-89 33152.0 90-91 33336.0 92-93 33032.0 94-95 39093.0 96-97 125040.0 98-99 279378.0 100-101 2811227.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.22117103088013 #Duplication Level Percentage of deduplicated Percentage of total 1 91.41747022726038 80.64956276129529 2 6.291836890392939 11.10146436811513 3 1.3924599547010796 3.685333434520066 4 0.44622485554630714 1.5746591719752216 5 0.18923828008833954 0.83474113366315 6 0.09112600729452641 0.4823545844934986 7 0.05475176791417242 0.33811855569794813 8 0.03292876899545634 0.23240116491075974 9 0.021203318538772702 0.16835234321081682 >10 0.06137909503609358 0.7836565556918217 >50 8.559055463399335E-4 0.0568063954071745 >100 4.878337732101085E-4 0.07579404118908363 >500 3.709491235707794E-5 0.016755489830037922 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.6425840381192132E-4 0.0 4.6930972517691804E-5 0.0 5 0.0 1.6425840381192132E-4 0.0 4.6930972517691804E-5 0.0 6 0.0 1.6425840381192132E-4 0.0 4.6930972517691804E-5 0.0 7 0.0 1.6425840381192132E-4 0.0 4.6930972517691804E-5 0.0 8 0.0 1.6425840381192132E-4 0.0 4.6930972517691804E-5 0.0 9 0.0 2.581203488473049E-4 0.0 4.6930972517691804E-5 0.0 10-11 0.0 2.581203488473049E-4 0.0 5.866371564711476E-5 0.0 12-13 0.0 2.581203488473049E-4 0.0 7.039645877653771E-5 0.0 14-15 0.0 3.4024955075326557E-4 0.0 8.212920190596066E-5 1.1732743129422951E-5 16-17 0.0 3.519822938826885E-4 0.0 9.386194503538361E-5 2.3465486258845902E-5 18-19 0.0 3.8718052327095737E-4 0.0 1.0559468816480656E-4 3.5198229388268855E-5 20-21 0.0 4.341114957886492E-4 0.0 1.1732743129422951E-4 4.6930972517691804E-5 22-23 0.0 5.162406976946098E-4 0.0 1.2906017442365246E-4 4.6930972517691804E-5 24-25 0.0 5.749044133417246E-4 0.0 2.2292211945903605E-4 4.6930972517691804E-5 26-27 0.0 6.218353858594163E-4 0.0 2.933185782355738E-4 4.6930972517691804E-5 28-29 0.0 6.335681289888393E-4 0.0 4.8104246830634096E-4 5.866371564711476E-5 30-31 0.0 7.27430074024223E-4 0.0 0.0012436707717188328 7.039645877653771E-5 32-33 0.0 7.626283034124917E-4 0.0 0.0029918494980028525 7.039645877653771E-5 34-35 0.0 9.034212209655672E-4 0.0 0.004740028224286872 9.386194503538361E-5 36-37 0.0 0.0010794123679069116 0.0 0.007415093657795305 9.386194503538361E-5 38-39 0.0 0.0011028778541657574 0.0 0.011509821009963915 1.0559468816480656E-4 40-41 0.0 0.0012906017442365246 0.0 0.016120789059827133 1.1732743129422951E-4 42-43 0.0 0.0013375327167542165 0.0 0.0206026969352667 1.1732743129422951E-4 44-45 0.0 0.0015252566068249835 0.0 0.025706440196565684 1.2906017442365246E-4 46-47 0.0 0.0016425840381192132 0.0 0.030892312659770632 1.4079291755307542E-4 48-49 0.0 0.001654316781248636 0.0 0.03646536564624653 1.4079291755307542E-4 50-51 0.0 0.001971100845743056 0.0 0.041545643421286665 1.4079291755307542E-4 52-53 0.0 0.001994566332001902 0.0 0.04649686102190315 1.6425840381192132E-4 54-55 0.0 0.0020062990751313244 0.0 0.05143634587939022 1.8772389007076722E-4 56-57 0.0 0.0020414973045195933 0.0 0.05723232098532516 1.8772389007076722E-4 58-59 0.0 0.0020414973045195933 0.0 0.06251205539356548 1.8772389007076722E-4 60-61 0.0 0.0020884282770372853 0.0 0.06789738448997062 1.8772389007076722E-4 62-63 0.0 0.0021118937632961313 0.0 0.07276647288868114 2.1118937632961312E-4 64-65 0.0 0.002370014112143436 0.0 0.07728357899350898 2.1118937632961312E-4 66-67 0.0 0.002393479598402282 0.0 0.08217613287847836 2.1118937632961312E-4 68-69 0.0 0.002393479598402282 0.0 0.08718601419474195 2.1118937632961312E-4 70-71 0.0 0.002405212341531705 0.0 0.09101088845493382 2.2292211945903605E-4 72-73 0.0 0.0024286778277905507 0.0 0.09434298750368994 2.8158583510615084E-4 74-75 0.0 0.0024521433140493967 0.0 0.09691245824903358 2.8158583510615084E-4 76-77 0.0 0.0024990742865670886 0.0 0.09957579093941259 2.8158583510615084E-4 78-79 0.0 0.0025108070296965116 0.0 0.1015234262988968 2.8158583510615084E-4 80-81 0.0 0.0025108070296965116 0.0 0.10198100328094428 2.933185782355738E-4 82-83 0.0 0.002534272515955357 0.0 0.10253244220802717 3.050513213649967E-4 84-85 0.0 0.002557738002214203 0.0 0.10276709707061563 3.050513213649967E-4 86-87 0.0 0.002557738002214203 0.0 0.10287269175878043 3.050513213649967E-4 88 0.0 0.002651599947249587 0.0 0.10287269175878043 3.050513213649967E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4900 0.0 50.67215 1 CTTATAC 5020 0.0 49.885784 1 TATACAC 7015 0.0 39.223736 3 GTATCAA 8995 0.0 38.27496 1 TTATACA 7335 0.0 35.304573 2 ATCAACG 10540 0.0 32.379215 3 TCAACGC 10565 0.0 32.343353 4 CAACGCA 10850 0.0 31.453726 5 TATCAAC 11125 0.0 30.870115 2 AACGCAG 11215 0.0 30.505402 6 ACATCTC 9145 0.0 28.594229 8 ACACATC 9255 0.0 27.88564 6 TACACAT 9855 0.0 27.184093 5 ACGCAGA 13040 0.0 26.203337 7 CGCAGAG 13075 0.0 26.198444 8 CACATCT 10145 0.0 25.35519 7 CATCTCC 10240 0.0 24.95333 9 ATACACA 12380 0.0 23.087461 4 TATGCCG 6610 0.0 22.47889 42-43 CGTATGC 6715 0.0 21.939646 40-41 >>END_MODULE