##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140062_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4091184 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.304187980789912 31.0 18.0 33.0 18.0 33.0 2 30.23414493212723 32.0 27.0 33.0 25.0 33.0 3 31.324142839823384 33.0 31.0 33.0 28.0 33.0 4 32.43056753252848 33.0 33.0 33.0 31.0 34.0 5 32.91886676326462 33.0 33.0 34.0 32.0 34.0 6 37.092293820077515 38.0 37.0 38.0 36.0 38.0 7 37.20754089769612 38.0 38.0 38.0 36.0 38.0 8 37.44134020860465 38.0 38.0 38.0 37.0 38.0 9 37.48875117814305 38.0 38.0 38.0 37.0 38.0 10-11 37.51018054920043 38.0 38.0 38.0 37.0 38.0 12-13 37.52911418797101 38.0 38.0 38.0 37.5 38.0 14-15 37.53821314318789 38.0 38.0 38.0 38.0 38.0 16-17 37.47701276696428 38.0 38.0 38.0 37.5 38.0 18-19 37.508284398843955 38.0 38.0 38.0 37.0 38.0 20-21 37.53201413292039 38.0 38.0 38.0 37.0 38.0 22-23 37.54119744357466 38.0 38.0 38.0 38.0 38.0 24-25 37.54097006058481 38.0 38.0 38.0 38.0 38.0 26-27 37.51064928664846 38.0 38.0 38.0 37.5 38.0 28-29 37.4845108143748 38.0 38.0 38.0 37.0 38.0 30-31 37.38862982370918 38.0 38.0 38.0 37.0 38.0 32-33 37.45235942637507 38.0 38.0 38.0 37.0 38.0 34-35 37.462011729365315 38.0 38.0 38.0 37.0 38.0 36-37 37.441960249563984 38.0 38.0 38.0 37.0 38.0 38-39 37.4206457972394 38.0 38.0 38.0 37.0 38.0 40-41 37.405944889934005 38.0 38.0 38.0 37.0 38.0 42-43 37.378604325005696 38.0 38.0 38.0 37.0 38.0 44-45 37.340481021840674 38.0 38.0 38.0 37.0 38.0 46-47 37.306128473749794 38.0 38.0 38.0 37.0 38.0 48-49 37.27278139995634 38.0 38.0 38.0 37.0 38.0 50-51 37.22650754168116 38.0 38.0 38.0 37.0 38.0 52-53 37.20570194220238 38.0 38.0 38.0 37.0 38.0 54-55 37.19521135115471 38.0 38.0 38.0 37.0 38.0 56-57 37.18581190338359 38.0 38.0 38.0 37.0 38.0 58-59 37.17888876340005 38.0 38.0 38.0 37.0 38.0 60-61 37.18088309213998 38.0 38.0 38.0 37.0 38.0 62-63 37.189858282007975 38.0 38.0 38.0 37.0 38.0 64-65 37.19537806354158 38.0 38.0 38.0 37.0 38.0 66-67 37.178452841211325 38.0 38.0 38.0 37.0 38.0 68-69 37.18199014468438 38.0 38.0 38.0 36.5 38.0 70-71 37.167261178390845 38.0 38.0 38.0 36.0 38.0 72-73 37.16118711125437 38.0 38.0 38.0 36.0 38.0 74-75 37.15531658709325 38.0 38.0 38.0 36.0 38.0 76-77 37.15981327096998 38.0 38.0 38.0 36.0 38.0 78-79 37.1468177527571 38.0 38.0 38.0 36.0 38.0 80-81 37.144067969213076 38.0 38.0 38.0 36.0 38.0 82-83 37.09609430914958 38.0 38.0 38.0 36.0 38.0 84-85 37.08792196128145 38.0 38.0 38.0 36.0 38.0 86-87 37.08248431197913 38.0 38.0 38.0 36.0 38.0 88-89 37.08835832871364 38.0 38.0 38.0 36.0 38.0 90-91 37.08035664634908 38.0 38.0 38.0 36.0 38.0 92-93 37.06777055709381 38.0 38.0 38.0 36.0 38.0 94-95 37.03869032734296 38.0 38.0 38.0 36.0 38.0 96-97 37.00737939193692 38.0 38.0 38.0 36.0 38.0 98-99 37.01351915192425 38.0 38.0 38.0 36.0 38.0 100 35.48060372990834 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 4.0 18 5.0 19 11.0 20 38.0 21 87.0 22 209.0 23 603.0 24 1394.0 25 2687.0 26 4949.0 27 8048.0 28 13027.0 29 19541.0 30 27422.0 31 36774.0 32 47387.0 33 62720.0 34 92305.0 35 171916.0 36 574814.0 37 3027242.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.32514792783703 21.47960101525622 14.433034544523052 23.762216512383702 2 13.921669616708096 21.106073646820764 42.02541590450812 22.946840831963016 3 17.477018877664754 26.574825282852103 31.313917926937535 24.634237912545608 4 12.136138408751085 18.555526467405507 39.812242102383934 29.49609302145948 5 12.893118810598509 37.96897923426315 35.77248570421499 13.365416250923353 6 28.764289261983816 38.75921982487222 19.319786154814842 13.15670475832913 7 25.641916863186793 33.37332175722236 23.72643225041944 17.25832912917141 8 23.75058173868494 37.12546294666777 21.71982487221303 17.40413044243427 9 25.382928636254643 17.05061172032332 21.92525995638897 35.641199687033065 10-11 23.467294264419916 27.345135133582676 29.452339320761578 19.735231281235826 12-13 24.463104624859774 25.015133151568484 29.56494129388232 20.956820929689414 14-15 21.704878098858423 26.278211881939313 27.408117063422228 24.608792955780036 16-17 21.05391739897301 29.4072571656518 28.07428118608207 21.464544249293112 18-19 21.037724042722104 28.465549337306754 29.999934004434902 20.496792615536236 20-21 22.07430927038763 27.529481355464057 29.77935272399292 20.616856650155395 22-23 21.69948183742142 27.496740400988124 29.61133651137107 21.192441250219385 24-25 21.376839095148014 27.689247142682362 29.749153490352732 21.184760271816895 26-27 21.29982198891058 27.827119365462522 29.68777101830826 21.185287627318633 28-29 21.221723684155826 27.908383501664314 29.705492719977443 21.164400094202417 30-31 21.60583419848681 27.650717243037175 29.62316925486479 21.120279303611223 32-33 21.251287495587746 27.831686949755845 29.620971601385726 21.296053953270686 34-35 21.39211231056355 27.82378605403378 29.647848825947527 21.13625280945514 36-37 21.33601041691749 27.800438730533877 29.658542187219272 21.20500866532936 38-39 21.210926608005735 27.843151866983877 29.725754236398714 21.22016728861167 40-41 21.42558256727545 27.74899714240578 29.620531384543398 21.20488890577538 42-43 21.41256012907366 27.756648301065546 29.484141823546583 21.346649746314206 44-45 21.45959016087984 27.86684703042447 29.33798963195704 21.335573176738652 46-47 21.494435815405787 27.860530578236535 29.122155001691347 21.52287860466633 48-49 21.49498936304859 27.911814647525272 29.124797392169672 21.46839859725647 50-51 21.445778524050514 28.040287278573878 29.009778306517735 21.504155890857874 52-53 21.577780851533866 28.03330669654183 28.926441156399484 21.462471295524825 54-55 21.58627799311579 27.998461248342014 28.847642309750288 21.567618448791904 56-57 21.599481230597796 28.05850684517026 28.81778691266893 21.524225011563015 58-59 21.51492115932152 28.13396386691343 28.931844254243256 21.419270719521794 60-61 21.641499172403634 28.09185349706099 28.866949283489163 21.39969804704622 62-63 21.53630264842824 28.226613609530364 28.817821308844554 21.41926243319684 64-65 21.52864481855054 28.199430489660454 28.7608795068348 21.511045184954206 66-67 21.610224228069416 28.153053504736747 28.649922918073823 21.58679934912002 68-69 21.66423624795901 28.12502111367603 28.684533528517537 21.526209109847418 70-71 21.60249775071894 27.962882987471854 28.76980856901073 21.664810692798476 72-73 21.651567988311147 27.92162443807453 28.7580822139849 21.668725359629423 74-75 21.6185944913271 28.00063604242333 28.671193632843934 21.709575833405633 76-77 21.637100577248162 28.02357219967691 28.62231169701408 21.71701552606084 78-79 21.674943205040204 28.011879609340085 28.573737821113383 21.73943936450633 80-81 21.69652265857954 28.032284085108728 28.519827566088395 21.75136569022334 82-83 21.691107665059505 28.01901986673274 28.57581688102364 21.714055587184113 84-85 21.821042723918808 27.96978113821203 28.5015144709752 21.70766166689397 86-87 21.69047884679393 28.002284389168935 28.53670245244701 21.77053431159013 88-89 21.750482896728343 28.00916454771338 28.441482494125918 21.798870061432357 90-91 21.77236458185785 28.034756663292182 28.496006299317923 21.696872455532045 92-93 21.777372145766577 28.049639660432412 28.457949537626824 21.715038656174183 94-95 21.700436843572824 28.18530158213795 28.4069183680846 21.707343206204623 96-97 21.84454175851347 28.174445197218397 28.48853338720076 21.492479657067378 98-99 22.86281756963033 30.122869971674 28.74797152808128 18.266340930614398 100 21.698097709410643 31.037467097280043 22.75546511844979 24.50897007485952 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 858.0 1 817.0 2 1118.0 3 1614.5 4 1971.0 5 2478.5 6 3108.5 7 4126.5 8 5512.0 9 6521.5 10 6695.0 11 6692.5 12 7381.0 13 8784.5 14 11143.0 15 13750.5 16 15399.0 17 16050.0 18 15790.0 19 14752.5 20 13652.5 21 13533.5 22 15026.5 23 18210.0 24 23586.0 25 30896.5 26 39787.0 27 49968.0 28 60274.5 29 70856.5 30 80348.5 31 89731.5 32 100093.5 33 109771.0 34 119310.0 35 128264.5 36 137437.0 37 145360.0 38 151335.5 39 156174.0 40 161350.5 41 165970.5 42 168977.5 43 173227.0 44 174586.5 45 174097.5 46 173090.5 47 170527.0 48 167465.0 49 162616.5 50 157406.0 51 150678.5 52 141831.0 53 132124.5 54 121831.0 55 110911.0 56 100078.0 57 89164.0 58 78145.0 59 67272.5 60 56256.0 61 45441.5 62 35552.0 63 27370.0 64 20484.5 65 15014.0 66 10881.5 67 7997.0 68 5873.0 69 4150.5 70 2943.5 71 2079.0 72 1419.0 73 971.5 74 658.0 75 442.5 76 290.0 77 176.0 78 113.5 79 79.5 80 53.0 81 30.5 82 21.0 83 13.0 84 7.5 85 6.5 86 4.5 87 2.5 88 1.5 89 1.0 90 1.0 91 1.5 92 2.0 93 2.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006868427330572275 3 0.0 4 0.004179719122874943 5 0.002884250622802592 6 0.0 7 0.0 8 0.0 9 4.1552763209867853E-4 10-11 6.966198538124905E-4 12-13 1.222140094407878E-5 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 9.777479238745022E-4 24-25 0.001478917842813767 26-27 0.0 28-29 0.002103125023690725 30-31 0.00299867360710693 32-33 5.151182294454335E-4 34-35 1.2298570930655E-5 36-37 0.0012594976308479124 38-39 0.002272857682594307 40-41 0.0016872319410253696 42-43 0.0 44-45 0.0 46-47 0.0014962934126513782 48-49 6.063844802730227E-4 50-51 0.0018474332387065887 52-53 0.0026220928365079227 54-55 0.002061493560013051 56-57 0.002159271030100238 58-59 0.0020977302961605214 60-61 9.089165253776278E-4 62-63 8.893554280235074E-4 64-65 0.003602618731132837 66-67 0.002591858748714696 68-69 8.445463280110962E-5 70-71 0.0032421018204828317 72-73 0.010143949249218442 74-75 0.012432039032830883 76-77 0.005053943892726305 78-79 0.004499873811104475 80-81 3.2911694632132524E-4 82-83 1.0582034577553842E-4 84-85 4.581667769830451E-5 86-87 0.0020214059171334677 88-89 0.0046949879989243645 90-91 7.728971165101392E-4 92-93 9.410545744662865E-4 94-95 0.0022751751763865863 96-97 0.0024429942058407893 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 24.0 20-21 87.0 22-23 195.0 24-25 271.0 26-27 945.0 28-29 2638.0 30-31 7993.0 32-33 10347.0 34-35 14324.0 36-37 22180.0 38-39 25359.0 40-41 25065.0 42-43 28824.0 44-45 34336.0 46-47 34940.0 48-49 32766.0 50-51 30061.0 52-53 29406.0 54-55 31908.0 56-57 33023.0 58-59 32664.0 60-61 31782.0 62-63 31554.0 64-65 33429.0 66-67 35745.0 68-69 35945.0 70-71 37065.0 72-73 33315.0 74-75 33358.0 76-77 34795.0 78-79 35568.0 80-81 35293.0 82-83 33737.0 84-85 33419.0 86-87 34293.0 88-89 35781.0 90-91 35180.0 92-93 35522.0 94-95 40354.0 96-97 123042.0 98-99 266301.0 100-101 2678350.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 90.45656694349435 #Duplication Level Percentage of deduplicated Percentage of total 1 92.596840053718 83.75992261075183 2 5.739004347727499 10.382612619384354 3 1.0794678385732623 2.929348644097544 4 0.32377670143819137 1.1715091547355017 5 0.11539676571495219 0.5219197631478655 6 0.054282085108599484 0.2946102639275092 7 0.03207566442995038 0.20310181407354072 8 0.018080873611722496 0.13084270034045095 9 0.010234022009997276 0.0833161047343662 >10 0.02964051036323311 0.3839684941752748 >50 7.115185589783775E-4 0.043934149585475805 >100 4.896187455744097E-4 0.09491368104623879 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.444280188815756E-5 0.0 2.444280188815756E-5 0.0 3 0.0 2.444280188815756E-5 0.0 2.444280188815756E-5 0.0 4 0.0 7.332840566447268E-5 0.0 4.888560377631512E-5 0.0 5 0.0 7.332840566447268E-5 0.0 1.222140094407878E-4 0.0 6 0.0 7.332840566447268E-5 0.0 1.222140094407878E-4 4.888560377631512E-5 7 0.0 7.332840566447268E-5 0.0 1.7109961321710293E-4 7.332840566447268E-5 8 0.0 7.332840566447268E-5 0.0 1.7109961321710293E-4 7.332840566447268E-5 9 0.0 1.222140094407878E-4 0.0 3.1775642454604826E-4 7.332840566447268E-5 10-11 0.0 1.222140094407878E-4 0.0 3.7886342926644217E-4 9.777120755263024E-5 12-13 0.0 1.222140094407878E-4 0.0 4.1552763209867853E-4 1.222140094407878E-4 14-15 0.0 1.222140094407878E-4 0.0 4.6441323587499364E-4 1.955424151052605E-4 16-17 0.0 1.222140094407878E-4 0.0 4.888560377631512E-4 1.955424151052605E-4 18-19 0.0 1.222140094407878E-4 0.0 5.744058443717026E-4 2.1998521699341804E-4 20-21 0.0 1.222140094407878E-4 0.0 7.577268585328843E-4 2.1998521699341804E-4 22-23 0.0 1.4665681132894535E-4 0.0 8.066124623091994E-4 2.1998521699341804E-4 24-25 0.0 1.7109961321710293E-4 0.0 8.432766651414359E-4 2.1998521699341804E-4 26-27 0.0 1.7109961321710293E-4 0.0 9.532692736381449E-4 2.1998521699341804E-4 28-29 0.0 1.833210141611817E-4 0.0 0.0011732544906315628 2.1998521699341804E-4 30-31 0.0 1.955424151052605E-4 0.0 0.002016531155772999 2.1998521699341804E-4 32-33 0.0 1.955424151052605E-4 0.0 0.004558582552141385 2.1998521699341804E-4 34-35 0.0 2.1998521699341804E-4 0.0 0.007760589599490025 2.5664941982565435E-4 36-37 0.0 2.444280188815756E-4 0.0 0.012575821571457065 2.6887082076973315E-4 38-39 0.0 2.444280188815756E-4 0.0 0.019578684312414205 2.6887082076973315E-4 40-41 0.0 3.91084830210521E-4 0.0 0.02644711164298648 2.933136226578907E-4 42-43 0.0 4.1552763209867853E-4 0.0 0.033596631195272564 2.933136226578907E-4 44-45 0.0 4.7663463681907244E-4 0.0 0.0416383130164764 2.933136226578907E-4 46-47 0.0 5.132988396513088E-4 0.0 0.05047438589904536 2.933136226578907E-4 48-49 0.0 5.132988396513088E-4 0.0 0.05907825216367682 2.933136226578907E-4 50-51 0.0 5.377416415394663E-4 0.0 0.06793876784813394 2.933136226578907E-4 52-53 0.0 5.621844434276239E-4 0.0 0.07618821348538712 3.1775642454604826E-4 54-55 0.0 5.621844434276239E-4 0.0 0.0836310466603311 3.4219922643420587E-4 56-57 0.0 5.621844434276239E-4 0.0 0.08893513467006128 3.4219922643420587E-4 58-59 0.0 6.110700472039389E-4 0.0 0.09431255108545594 3.4219922643420587E-4 60-61 0.0 6.355128490920965E-4 0.0 0.09924999706686377 3.4219922643420587E-4 62-63 0.0 6.355128490920965E-4 0.0 0.103784136817117 3.4219922643420587E-4 64-65 0.0 6.843984528684117E-4 0.0 0.10835494077020247 3.4219922643420587E-4 66-67 0.0 7.088412547565692E-4 0.0 0.11362236457710043 3.4219922643420587E-4 68-69 0.0 7.088412547565692E-4 0.0 0.11847426075189971 3.4219922643420587E-4 70-71 2.444280188815756E-5 7.088412547565692E-4 0.0 0.12328949272386674 3.4219922643420587E-4 72-73 2.444280188815756E-5 7.088412547565692E-4 0.0 0.12788473947884035 3.4219922643420587E-4 74-75 2.444280188815756E-5 7.088412547565692E-4 0.0 0.13031679826671203 3.4219922643420587E-4 76-77 2.444280188815756E-5 7.088412547565692E-4 0.0 0.13317660608762646 3.4219922643420587E-4 78-79 2.444280188815756E-5 7.21062655700648E-4 0.0 0.13525424424811988 3.4219922643420587E-4 80-81 2.444280188815756E-5 7.332840566447268E-4 0.0 0.13604863530948497 3.4219922643420587E-4 82-83 2.444280188815756E-5 7.332840566447268E-4 0.0 0.13652526994630404 3.4219922643420587E-4 84-85 2.444280188815756E-5 7.332840566447268E-4 0.0 0.1367330337623534 3.4219922643420587E-4 86-87 2.444280188815756E-5 7.332840566447268E-4 0.0 0.13687969057368235 3.4219922643420587E-4 88 2.444280188815756E-5 8.310552641973571E-4 0.0 0.13687969057368235 3.4219922643420587E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5820 0.0 53.93384 1 GTATCAA 10810 0.0 37.114372 1 ATCAACG 12790 0.0 30.96688 3 TCAACGC 12930 0.0 30.664896 4 CAACGCA 13090 0.0 30.354774 5 TATCAAC 13195 0.0 30.050877 2 AACGCAG 13525 0.0 29.315151 6 ACGCAGA 15760 0.0 25.157831 7 CGCAGAG 15850 0.0 25.014978 8 GTGGTAT 2265 0.0 22.188639 1 GCAGAGT 18570 0.0 21.3739 9 TGGTATC 2200 0.0 21.295452 2 GAGTACT 10160 0.0 20.727505 12-13 TACATGG 14500 0.0 19.679935 2 CAGAGTA 18145 0.0 19.433474 10-11 GTACATG 14960 0.0 19.217154 1 ACATGGG 14890 0.0 18.76265 3 GTACTTT 11370 0.0 18.409533 14-15 AGAGTAC 16960 0.0 18.25516 10-11 CATGGGG 10075 0.0 16.570337 4 >>END_MODULE