##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140061_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3974812 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.6327584801495 31.0 18.0 33.0 18.0 33.0 2 30.424304344457045 32.0 29.0 33.0 25.0 33.0 3 31.426697916781976 33.0 31.0 33.0 29.0 33.0 4 32.44531162731722 33.0 33.0 33.0 31.0 34.0 5 32.92746222966017 33.0 33.0 34.0 32.0 34.0 6 37.094980592792815 38.0 37.0 38.0 36.0 38.0 7 37.20913341310231 38.0 38.0 38.0 36.0 38.0 8 37.44049026721264 38.0 38.0 38.0 37.0 38.0 9 37.49224793524826 38.0 38.0 38.0 37.0 38.0 10-11 37.50925842530414 38.0 38.0 38.0 37.0 38.0 12-13 37.53080233731809 38.0 38.0 38.0 37.5 38.0 14-15 37.53569439259014 38.0 38.0 38.0 38.0 38.0 16-17 37.47226988345612 38.0 38.0 38.0 37.5 38.0 18-19 37.506055254940364 38.0 38.0 38.0 37.0 38.0 20-21 37.52960618337664 38.0 38.0 38.0 37.0 38.0 22-23 37.538070803282935 38.0 38.0 38.0 38.0 38.0 24-25 37.535574742736586 38.0 38.0 38.0 38.0 38.0 26-27 37.50523668990471 38.0 38.0 38.0 37.5 38.0 28-29 37.4777011167974 38.0 38.0 38.0 37.0 38.0 30-31 37.38375736002007 38.0 38.0 38.0 37.0 38.0 32-33 37.444854773766664 38.0 38.0 38.0 37.0 38.0 34-35 37.45190197454969 38.0 38.0 38.0 37.0 38.0 36-37 37.43429059692552 38.0 38.0 38.0 37.0 38.0 38-39 37.40417154411992 38.0 38.0 38.0 37.0 38.0 40-41 37.406503051798715 38.0 38.0 38.0 37.0 38.0 42-43 37.385080483426094 38.0 38.0 38.0 37.0 38.0 44-45 37.353289339397406 38.0 38.0 38.0 37.0 38.0 46-47 37.32890454219752 38.0 38.0 38.0 37.0 38.0 48-49 37.30133209221479 38.0 38.0 38.0 37.0 38.0 50-51 37.26239565229973 38.0 38.0 38.0 37.0 38.0 52-53 37.24334296493083 38.0 38.0 38.0 37.0 38.0 54-55 37.23032230171128 38.0 38.0 38.0 37.0 38.0 56-57 37.2234630558203 38.0 38.0 38.0 37.0 38.0 58-59 37.213756747366276 38.0 38.0 38.0 37.0 38.0 60-61 37.213267703365005 38.0 38.0 38.0 37.0 38.0 62-63 37.221255079470794 38.0 38.0 38.0 37.0 38.0 64-65 37.2220632509301 38.0 38.0 38.0 37.0 38.0 66-67 37.20139815567076 38.0 38.0 38.0 37.0 38.0 68-69 37.20424894781165 38.0 38.0 38.0 37.0 38.0 70-71 37.18577558540244 38.0 38.0 38.0 36.5 38.0 72-73 37.17874755161246 38.0 38.0 38.0 36.0 38.0 74-75 37.169443651750356 38.0 38.0 38.0 36.0 38.0 76-77 37.17365457398094 38.0 38.0 38.0 36.0 38.0 78-79 37.160527134785205 38.0 38.0 38.0 36.0 38.0 80-81 37.16111348995113 38.0 38.0 38.0 36.0 38.0 82-83 37.11451670621733 38.0 38.0 38.0 36.0 38.0 84-85 37.10585249372983 38.0 38.0 38.0 36.0 38.0 86-87 37.09922386963391 38.0 38.0 38.0 36.0 38.0 88-89 37.10511365323521 38.0 38.0 38.0 36.0 38.0 90-91 37.09424552874251 38.0 38.0 38.0 36.0 38.0 92-93 37.07929420555529 38.0 38.0 38.0 36.0 38.0 94-95 37.052062027024505 38.0 38.0 38.0 36.0 38.0 96-97 37.02291189502296 38.0 38.0 38.0 36.0 38.0 98-99 37.024113780998874 38.0 38.0 38.0 36.0 38.0 100 35.51303051939103 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 5.0 19 6.0 20 39.0 21 78.0 22 218.0 23 612.0 24 1323.0 25 2644.0 26 4842.0 27 7915.0 28 12526.0 29 18402.0 30 25420.0 31 34037.0 32 44195.0 33 59443.0 34 88723.0 35 164940.0 36 550251.0 37 2959190.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.03658537812606 21.30020237435129 14.30990950012227 24.35330274740038 2 14.000846390662128 20.864511071011272 41.75025738931254 23.38438514901407 3 17.367462913969263 26.130242134722348 31.427272535153865 25.075022416154525 4 12.425125595774828 18.497651117480356 39.05814742206621 30.0190758646786 5 13.246049311555852 37.453137819405654 35.79997619938375 13.500836669654742 6 29.35074665166554 38.41115001162319 18.918026814853132 13.320076521858141 7 25.801522185200206 32.895115542571574 23.476556878664955 17.82680539356327 8 23.881003680174057 37.03636800935491 21.58021561774494 17.502412692726097 9 25.124610043272614 17.05393982087149 21.56015397001107 36.26129616584482 10-11 23.728116795960545 26.990008289735695 29.334821041085135 19.947053873218618 12-13 24.623409767156225 24.45672259636999 29.279203464013758 21.640664172460024 14-15 21.854819800282378 25.90652086186718 26.81918037884559 25.419478959004856 16-17 21.58754929792906 29.094558434461803 27.46622984936143 21.851662418247706 18-19 21.598681899923818 28.116965028786268 29.16700211230116 21.11735095898875 20-21 22.3184722061137 27.301280046654192 28.9930730705144 21.387174676717713 22-23 22.02635258195776 27.4216224416859 28.83019061605343 21.72183436030291 24-25 21.86038588895751 27.501894295124075 28.955510263286577 21.68220955263184 26-27 21.88430631725554 27.63094424796464 28.904926002392983 21.57982343238683 28-29 21.57497312632158 27.532793061537795 29.015492655157182 21.876741156983435 30-31 22.03952676923922 27.303866872952298 29.07283208914845 21.583774268660033 32-33 21.7505523607156 27.66007351680638 28.835842510730984 21.753531611747036 34-35 21.77367717061144 27.67492079695994 29.060015054464195 21.491386977964428 36-37 21.967838623880258 27.50681008577867 28.86699672706559 21.65835456327548 38-39 21.69278601588978 27.48391289702387 29.0667907306981 21.756510356388254 40-41 21.934765452687454 27.361842968188764 28.99468248812342 21.708709091000365 42-43 21.96530428781742 27.378945559870875 28.868309136655018 21.787441015656682 44-45 21.90582437590749 27.60636574556214 28.722299971571463 21.765509906958904 46-47 22.119570108513827 27.398433900092645 28.39764712114143 22.0843488702521 48-49 21.96248376560795 27.454035235111217 28.487599383724532 22.095881615556305 50-51 21.847309865179266 27.600189320850987 28.539903819538786 22.012596994430957 52-53 22.014899512792987 27.583877140016593 28.560398714561373 21.84082463262905 54-55 21.966752966588174 27.574976745326254 28.3713965470044 22.08687374108117 56-57 22.138587302614468 27.73206526271564 28.156770547172144 21.972576887497752 58-59 21.87781942274858 27.94057301483526 28.441948518830902 21.73965904358526 60-61 22.08000825839719 28.12143704503806 28.074689817035374 21.723864879529373 62-63 21.903585140071467 28.340493374426927 27.994459620290314 21.76146186521129 64-65 21.896781716829953 28.28233792813955 27.990639783853844 21.830240571176656 66-67 21.949516213481353 28.24614772450967 27.865559303167753 21.93877675884123 68-69 21.9577914755687 28.10078820130909 28.027117724112216 21.91430259900999 70-71 22.012811527133678 27.80043349310179 28.056245685765525 22.130509293999005 72-73 22.111803058822055 27.657772086211903 28.102327019455547 22.128097835510495 74-75 22.001815277571374 27.7341374974792 28.06686804933624 22.197179175613183 76-77 22.148913978921875 27.680646638992627 27.990940550445142 22.179498831640355 78-79 22.12346317189475 27.755790581377372 27.930683023602327 22.190063223125556 80-81 22.139238224943476 27.74264849609474 27.9228779613264 22.195235317635383 82-83 22.183921631248925 27.667426950511558 27.972949779773348 22.175701638466172 84-85 22.275838783132766 27.651947205474986 27.971677242279195 22.10053676911305 86-87 22.117579533062763 27.65357120730263 27.997390816689144 22.231458442945463 88-89 22.21865048295558 27.64324977789317 27.924771706632374 22.213328032518874 90-91 22.24121824598627 27.68276118775898 27.957137661560118 22.11888290469463 92-93 22.299740757051826 27.645404384637057 27.908880345028674 22.145974513282447 94-95 22.19039474506258 27.725464721100163 27.891780830200037 22.192359703637223 96-97 22.313279883180407 27.82497063211232 27.939745610859745 21.922003873847533 98-99 23.337968186061026 29.704961099882095 28.17435308946225 18.782717624594635 100 22.25765787791465 30.623959088428137 22.090722718676105 25.02766031498111 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 642.0 1 597.5 2 787.0 3 1161.5 4 1521.0 5 2041.5 6 2461.0 7 3047.0 8 3914.5 9 4571.0 10 4835.5 11 5091.5 12 5695.0 13 6720.0 14 8626.5 15 10763.5 16 12151.0 17 12894.5 18 12849.5 19 12231.5 20 11701.0 21 11771.5 22 13134.5 23 16059.5 24 20368.0 25 26758.5 26 35295.5 27 44290.0 28 53503.0 29 63335.5 30 72247.0 31 80985.5 32 90299.0 33 99189.0 34 108335.0 35 116781.0 36 125821.5 37 134260.5 38 140040.0 39 145567.0 40 152010.5 41 157081.5 42 160610.5 43 169691.0 44 175835.5 45 175755.5 46 174390.5 47 170241.0 48 165862.0 49 161802.0 50 158326.0 51 152665.0 52 145153.0 53 137239.0 54 128681.0 55 118907.0 56 108309.5 57 97341.5 58 85908.5 59 74318.0 60 62457.0 61 50729.0 62 39990.0 63 30796.0 64 22978.0 65 16842.0 66 12419.0 67 9456.0 68 7160.5 69 5253.5 70 3808.0 71 2693.5 72 1849.5 73 1257.5 74 862.0 75 562.0 76 356.5 77 209.5 78 134.0 79 85.0 80 54.5 81 36.0 82 22.5 83 9.5 84 5.5 85 3.0 86 4.0 87 5.0 88 3.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0072456257050647925 3 0.0 4 0.003924713923576763 5 0.0031448028233788164 6 0.0 7 0.0 8 0.0 9 3.019010710443664E-4 10-11 4.27693183979519E-4 12-13 2.515842258703053E-5 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 9.560525295514579E-4 24-25 0.0016354264569479646 26-27 0.0 28-29 0.0021521133879324078 30-31 0.0030863785391628683 32-33 7.448072104407328E-4 34-35 3.7977947724874075E-5 36-37 0.0013220207341155712 38-39 0.0022762742148260645 40-41 0.0016347049666455829 42-43 0.0 44-45 0.0 46-47 0.001647056591283302 48-49 5.981930581689576E-4 50-51 0.0017425149933362205 52-53 0.0026208491794512995 54-55 0.0019338798314310493 56-57 0.0020333561078376672 58-59 0.0019685317719641705 60-61 8.672360864209153E-4 62-63 8.328569109478334E-4 64-65 0.003676013810413435 66-67 0.0025768268694806957 68-69 1.0191557604867487E-4 70-71 0.0031375266303096563 72-73 0.010339846740493869 74-75 0.012387689469861143 76-77 0.005175864456897304 78-79 0.004553642290783598 80-81 2.954572667714763E-4 82-83 4.715098799394393E-5 84-85 9.529000560305233E-5 86-87 0.0018939333142869983 88-89 0.004673152721389393 90-91 8.370070008250263E-4 92-93 0.0010125926688290777 94-95 0.002099270646200849 96-97 0.0022015830918418544 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 24.0 20-21 77.0 22-23 158.0 24-25 309.0 26-27 921.0 28-29 2402.0 30-31 7857.0 32-33 10260.0 34-35 14268.0 36-37 22185.0 38-39 25616.0 40-41 25143.0 42-43 28573.0 44-45 33704.0 46-47 33889.0 48-49 31757.0 50-51 29458.0 52-53 29079.0 54-55 31710.0 56-57 32516.0 58-59 32253.0 60-61 32708.0 62-63 32450.0 64-65 34592.0 66-67 38395.0 68-69 39502.0 70-71 45013.0 72-73 34150.0 74-75 32922.0 76-77 33980.0 78-79 34959.0 80-81 34403.0 82-83 33106.0 84-85 33029.0 86-87 33423.0 88-89 34754.0 90-91 34812.0 92-93 34206.0 94-95 39014.0 96-97 119418.0 98-99 259155.0 100-101 2568662.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.11723563667138 #Duplication Level Percentage of deduplicated Percentage of total 1 91.88543538190895 81.88575996507721 2 6.1221600112251116 10.9117995265151 3 1.2317495459673886 3.293103436000163 4 0.3938003008685424 1.403775768251759 5 0.14757263189348807 0.6575632504987873 6 0.07233054563425795 0.38675389674103067 7 0.04560924465348473 0.28451988620966356 8 0.02741680519300264 0.19546479110316256 9 0.019679550813447733 0.15784084503592824 >10 0.05316229161724781 0.6772512077306735 >50 6.633311659703369E-4 0.04385268782724662 >100 3.823391368820667E-4 0.07910536098223934 >500 3.801992223725316E-5 0.023209378027000703 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.5158422587030532E-5 0.0 0.0 0.0 3 0.0 2.5158422587030532E-5 0.0 0.0 0.0 4 0.0 5.0316845174061065E-5 0.0 0.0 0.0 5 2.5158422587030532E-5 1.0063369034812213E-4 0.0 0.0 0.0 6 2.5158422587030532E-5 1.0063369034812213E-4 0.0 0.0 2.5158422587030532E-5 7 2.5158422587030532E-5 1.0063369034812213E-4 0.0 0.0 7.54752677610916E-5 8 2.5158422587030532E-5 1.2579211293515266E-4 0.0 2.5158422587030532E-5 7.54752677610916E-5 9 2.5158422587030532E-5 2.515842258703053E-4 0.0 1.0063369034812213E-4 1.0063369034812213E-4 10-11 7.54752677610916E-5 2.641634371638206E-4 0.0 1.132129016416374E-4 1.0063369034812213E-4 12-13 7.54752677610916E-5 2.7674264845733586E-4 0.0 1.3837132422866793E-4 1.132129016416374E-4 14-15 7.54752677610916E-5 3.270594936313969E-4 0.0 1.6352974681569846E-4 1.88688169402729E-4 16-17 7.54752677610916E-5 3.270594936313969E-4 0.0 2.0126738069624426E-4 2.264258032832748E-4 18-19 7.54752677610916E-5 3.8995555009897325E-4 0.0 2.0126738069624426E-4 2.7674264845733586E-4 20-21 7.54752677610916E-5 4.528516065665496E-4 0.0 2.264258032832748E-4 3.019010710443664E-4 22-23 7.54752677610916E-5 5.283268743276412E-4 0.0 2.3900501457679006E-4 3.396387049249122E-4 24-25 7.54752677610916E-5 5.534852969146717E-4 0.0 3.019010710443664E-4 3.77376338805458E-4 26-27 7.54752677610916E-5 6.038021420887328E-4 0.0 3.8995555009897325E-4 4.025347613924885E-4 28-29 7.54752677610916E-5 6.16381353382248E-4 0.0 5.786437195017022E-4 4.025347613924885E-4 30-31 7.54752677610916E-5 7.295942550238854E-4 0.0 0.001610139045569954 4.151139726860038E-4 32-33 7.54752677610916E-5 7.295942550238854E-4 0.0 0.0038743970784027018 4.2769318397951905E-4 34-35 7.54752677610916E-5 8.679655792525533E-4 0.0 0.006817932521085274 4.402723952730343E-4 36-37 7.54752677610916E-5 0.0010063369034812213 0.0 0.010868438557597188 4.528516065665496E-4 38-39 7.54752677610916E-5 0.0010818121712423128 0.0 0.016516504428385544 4.780100291535801E-4 40-41 7.54752677610916E-5 0.001232762706764496 0.0 0.02278095165255615 4.780100291535801E-4 42-43 7.54752677610916E-5 0.0012956587632320725 0.0 0.028617705692747228 4.905892404470954E-4 44-45 7.54752677610916E-5 0.0015220845665153472 0.0 0.03557400953806117 5.157476630341259E-4 46-47 7.54752677610916E-5 0.0016604558907440151 0.0 0.043637283977204455 5.409060856211565E-4 48-49 7.54752677610916E-5 0.0016604558907440151 0.0 0.0514238157678904 5.786437195017022E-4 50-51 7.54752677610916E-5 0.0019120401166143205 0.0 0.05962546153126236 6.038021420887328E-4 52-53 7.54752677610916E-5 0.0019120401166143205 0.0 0.06737425568806776 6.038021420887328E-4 54-55 7.54752677610916E-5 0.0019246193279078357 0.0 0.07568911435308134 6.038021420887328E-4 56-57 7.54752677610916E-5 0.0019623569617883813 0.0 0.08368949273575707 6.415397759692786E-4 58-59 7.54752677610916E-5 0.0020126738069624426 0.0 0.09141312846997543 6.792774098498244E-4 60-61 7.54752677610916E-5 0.0021007282860170495 0.0 0.0985581204846921 6.792774098498244E-4 62-63 7.54752677610916E-5 0.002163624342484626 0.0 0.10535089458319036 6.792774098498244E-4 64-65 7.54752677610916E-5 0.0022642580328327477 0.0 0.11146439127183877 6.792774098498244E-4 66-67 7.54752677610916E-5 0.0022894164554197786 0.0 0.1180810564122278 6.792774098498244E-4 68-69 7.54752677610916E-5 0.002327154089300324 0.0 0.1242574491573438 6.792774098498244E-4 70-71 7.54752677610916E-5 0.0023523125118873546 0.0 0.12928913367474992 7.044358324368549E-4 72-73 7.54752677610916E-5 0.002377470934474385 0.0 0.13326416444350073 7.54752677610916E-4 74-75 7.54752677610916E-5 0.0024529462022354767 0.0 0.1368743980847396 7.54752677610916E-4 76-77 7.54752677610916E-5 0.002528421469996568 0.0 0.14004435933070544 7.54752677610916E-4 78-79 7.54752677610916E-5 0.002566159103877114 0.0 0.14224572130707064 7.54752677610916E-4 80-81 7.54752677610916E-5 0.0025913175264641445 0.0 0.14291241950562694 7.924903114914618E-4 82-83 7.54752677610916E-5 0.0026164759490511754 0.0 0.14346590480254162 9.560200583071602E-4 84-85 7.54752677610916E-5 0.0026667927942252362 0.0 0.14374264745099893 9.93757692187706E-4 86-87 7.54752677610916E-5 0.0027171096393992975 0.0 0.14385586035264059 0.001044074537361767 88 7.54752677610916E-5 0.00284290175233445 0.0 0.14385586035264059 0.0010566537486552824 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4685 0.0 48.252113 1 GTATCAA 8270 0.0 37.919724 1 CTTATAC 3745 0.0 32.791428 1 TCAACGC 9875 0.0 31.194424 4 ATCAACG 9880 0.0 31.092627 3 CAACGCA 10165 0.0 30.21897 5 TATCAAC 10490 0.0 29.81375 2 AACGCAG 10605 0.0 29.043852 6 TATACAC 5160 0.0 27.667225 3 ACGCAGA 12305 0.0 24.996767 7 CGCAGAG 12525 0.0 24.557701 8 TTATACA 5560 0.0 23.921247 2 ACACATC 5840 0.0 22.333275 6 ACATCTC 5930 0.0 21.636106 8 TACACAT 6490 0.0 21.603195 5 GTGGTAT 2165 0.0 20.608467 1 GCAGAGT 14875 0.0 20.563755 9 TATGCCG 3580 0.0 19.741209 42-43 CACATCT 6520 0.0 19.22212 7 GAGTACT 8545 0.0 19.116623 12-13 >>END_MODULE