##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140059_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7944010 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.877141770969573 32.0 18.0 33.0 18.0 33.0 2 31.235004361776987 32.0 32.0 33.0 27.0 34.0 3 32.443930206532976 33.0 33.0 33.0 31.0 34.0 4 32.76450646461925 33.0 33.0 34.0 31.0 34.0 5 33.1512294168814 33.0 33.0 34.0 33.0 34.0 6 37.038934744543376 38.0 37.0 38.0 36.0 38.0 7 37.35433049555577 38.0 38.0 38.0 37.0 38.0 8 37.29588847446063 38.0 38.0 38.0 36.0 38.0 9 37.45351252075463 38.0 38.0 38.0 37.0 38.0 10-11 37.487852923145866 38.0 38.0 38.0 37.0 38.0 12-13 37.50801226332797 38.0 38.0 38.0 37.0 38.0 14-15 37.45978479382579 38.0 38.0 38.0 37.0 38.0 16-17 37.47609425214722 38.0 38.0 38.0 37.0 38.0 18-19 37.39088590019398 38.0 38.0 38.0 37.0 38.0 20-21 37.48672706824179 38.0 38.0 38.0 37.0 38.0 22-23 37.50359127714276 38.0 38.0 38.0 37.0 38.0 24-25 37.51149349881208 38.0 38.0 38.0 37.0 38.0 26-27 37.49674957076232 38.0 38.0 38.0 37.0 38.0 28-29 37.430355606297375 38.0 38.0 38.0 37.0 38.0 30-31 37.47682542904285 38.0 38.0 38.0 37.0 38.0 32-33 37.473018247293794 38.0 38.0 38.0 37.0 38.0 34-35 37.45716444671655 38.0 38.0 38.0 37.0 38.0 36-37 37.44042058474459 38.0 38.0 38.0 37.0 38.0 38-39 37.43046260628262 38.0 38.0 38.0 37.0 38.0 40-41 37.418772705603544 38.0 38.0 38.0 37.0 38.0 42-43 37.35492875206796 38.0 38.0 38.0 37.0 38.0 44-45 37.37218686523226 38.0 38.0 38.0 37.0 38.0 46-47 37.36447919952903 38.0 38.0 38.0 37.0 38.0 48-49 37.33639564912408 38.0 38.0 38.0 37.0 38.0 50-51 37.30415249033008 38.0 38.0 38.0 37.0 38.0 52-53 37.28245101926143 38.0 38.0 38.0 37.0 38.0 54-55 37.267008598502564 38.0 38.0 38.0 37.0 38.0 56-57 37.26557920728607 38.0 38.0 38.0 37.0 38.0 58-59 37.25745578299231 38.0 38.0 38.0 37.0 38.0 60-61 37.25182060936125 38.0 38.0 38.0 37.0 38.0 62-63 37.25075641427117 38.0 38.0 38.0 37.0 38.0 64-65 37.24861610184632 38.0 38.0 38.0 37.0 38.0 66-67 37.24780673108596 38.0 38.0 38.0 37.0 38.0 68-69 37.24507034907466 38.0 38.0 38.0 37.0 38.0 70-71 37.247760343118344 38.0 38.0 38.0 37.0 38.0 72-73 37.21829427845926 38.0 38.0 38.0 37.0 38.0 74-75 37.213579215403755 38.0 38.0 38.0 36.0 38.0 76-77 37.21047910016166 38.0 38.0 38.0 36.0 38.0 78-79 37.19359754378939 38.0 38.0 38.0 36.0 38.0 80-81 37.18216450575366 38.0 38.0 38.0 36.0 38.0 82-83 37.1797949536518 38.0 38.0 38.0 36.0 38.0 84-85 37.15783210692818 38.0 38.0 38.0 36.0 38.0 86-87 37.13831739681579 38.0 38.0 38.0 36.0 38.0 88-89 37.116401068179236 38.0 38.0 38.0 36.0 38.0 90-91 37.101492101483984 38.0 38.0 38.0 36.0 38.0 92-93 37.09422473918332 38.0 38.0 38.0 36.0 38.0 94-95 37.0509435850677 38.0 38.0 38.0 36.0 38.0 96-97 37.05942659588028 38.0 38.0 38.0 36.0 38.0 98-99 37.05082182634885 38.0 38.0 38.0 36.0 38.0 100 35.37762792785327 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 8.0 19 23.0 20 99.0 21 312.0 22 683.0 23 1531.0 24 2934.0 25 5755.0 26 9231.0 27 14688.0 28 22293.0 29 32491.0 30 44925.0 31 60529.0 32 80771.0 33 110032.0 34 166029.0 35 309089.0 36 1009212.0 37 6073374.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.44436877597083 19.007327533575612 14.101178120369939 23.447125570083625 2 14.322869067778049 20.596934436456852 42.65937964659564 22.42081684916946 3 18.064705356614606 26.04163388515372 30.352429062904 25.541231695327678 4 12.398801109263458 18.33081781115583 39.16146882997378 30.108912249606934 5 13.584549469900164 37.430305511431975 35.75237568668505 13.23276933198281 6 29.86212218293326 37.90917410520406 19.11859153901251 13.110112172850167 7 26.59157025230331 32.60222482096574 23.240794007056888 17.56541091967407 8 24.09449990483393 36.948930565024604 21.47662741527954 17.479942114861917 9 25.388702263016683 17.337177073810945 21.58488710596352 35.68923355720885 10-11 23.987734154413197 26.90459226511548 29.22407575015641 19.883597830314915 12-13 24.780539047659808 24.357106801225072 29.237079258460145 21.625274892654968 14-15 22.03924227432004 25.878040553702764 26.738575778389993 25.344141393587204 16-17 21.7863648207895 28.99252392683292 27.467928665749415 21.753182586628164 18-19 21.830788229118543 28.228860487335737 28.942983455458894 20.997367828086823 20-21 22.493685749734137 27.37385472390513 28.881891797718414 21.250567728642324 22-23 22.26159203526037 27.363110364893213 28.67556778038115 21.699729819465272 24-25 22.089213969041126 27.433204524229115 28.79204185457666 21.685539652153103 26-27 22.070510965097544 27.611049412970978 28.702460205119284 21.6159794168122 28-29 21.959560863184656 27.55005684811532 28.73907876774367 21.751303520956355 30-31 22.207009353803222 27.364644327631122 28.734067130021696 21.69427918854396 32-33 21.999784023290143 27.53888606382825 28.693219094991946 21.768110817889664 34-35 22.186682717636085 27.630602777280718 28.676142279547594 21.506572225535603 36-37 22.140047753187282 27.513614075500097 28.615661476586634 21.73067669472599 38-39 22.002537261281987 27.604275246358785 28.749065649993522 21.644121842365706 40-41 22.274361065887263 27.429445883145455 28.635020771913595 21.66117227905369 42-43 22.221472397936775 27.476073407840516 28.515529677379188 21.786924516843527 44-45 22.191402604707104 27.594844819437963 28.448395485243548 21.765357090611385 46-47 22.312081510099564 27.524217898549942 28.241393907496715 21.92230668385378 48-49 22.22206498414316 27.610809952652616 28.271780329832247 21.895344733371974 50-51 22.137700232362757 27.71720310821718 28.270410838903043 21.87468582051702 52-53 22.330542361824897 27.678922439984554 28.212072924997283 21.778462273193266 54-55 22.3212313521168 27.564801062614297 28.168376079737968 21.94559150553094 56-57 22.36148697055772 27.7021528398137 28.06494337331499 21.87141681631359 58-59 22.291386941102875 27.79992801607732 28.17335483224095 21.73533021057886 60-61 22.44494671253094 27.848601512307752 28.059744878097288 21.646706897064025 62-63 22.34512836885542 27.959593576862922 28.002526766873608 21.69275128740805 64-65 22.410065491659815 27.935611642162854 27.945393379825852 21.70892948635148 66-67 22.48608144085329 27.929543371219467 27.81812886006073 21.76624632786651 68-69 22.344860358888088 27.89447468458378 27.88568511406134 21.874979842466796 70-71 22.3716632494944 27.688688393162643 27.911237981624744 22.028410375718217 72-73 22.354491507231327 27.61134326133065 27.975704981131837 22.058460250306187 74-75 22.287799464041733 27.696191724008813 27.950125356828952 22.06588345512051 76-77 22.34347633450379 27.652287034711932 27.86472853117664 22.139508099607635 78-79 22.30026643651947 27.638512945705607 27.866840483576127 22.1943801341988 80-81 22.288249590038774 27.66675818093786 27.856452516034775 22.188539712988586 82-83 22.267229851453667 27.646616357265664 27.970594209522154 22.11555958175852 84-85 22.38385679646466 27.64163214316571 27.875520330870458 22.09899072949917 86-87 22.262028798198106 27.617105773470623 27.962018846340314 22.158846581990954 88-89 22.288401887383426 27.618488025871855 27.896007380412218 22.197102706332497 90-91 22.311540406453176 27.65053571937479 27.90941984127165 22.128504032900384 92-93 22.32617870754245 27.645268504454844 27.935403847286956 22.09314894071575 94-95 22.301483074261423 27.716656754607904 27.879750926165087 22.102109244965586 96-97 22.361263525264516 27.807769737253185 27.96756051872449 21.86340621875781 98-99 23.447949056242756 29.69835646538766 28.209834992927114 18.64385948544247 100 22.315581790416143 30.609022401661452 22.142699423286672 24.932696384635737 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 705.0 1 707.0 2 1137.5 3 1809.0 4 2394.0 5 3133.5 6 3748.5 7 4684.0 8 6065.0 9 7154.0 10 7766.0 11 8357.5 12 9302.5 13 10931.0 14 13713.0 15 16697.5 16 18928.0 17 20323.0 18 20565.5 19 19849.0 20 19135.5 21 19511.5 22 21752.5 23 26474.5 24 34362.0 25 45521.0 26 60213.5 27 76806.0 28 95003.5 29 115010.0 30 133537.0 31 152070.5 32 172283.0 33 191339.5 34 209431.0 35 227031.0 36 245896.0 37 263612.5 38 277951.5 39 291330.5 40 305618.0 41 316954.0 42 324104.5 43 334879.0 44 340882.0 45 341548.5 46 340958.0 47 337646.0 48 334616.0 49 326725.0 50 316517.0 51 305256.5 52 290351.5 53 272999.0 54 254588.0 55 234190.5 56 213013.5 57 192563.5 58 170828.0 59 147637.5 60 122213.0 61 98286.5 62 77867.5 63 59711.5 64 44768.0 65 33334.5 66 24803.0 67 18916.5 68 14383.5 69 10587.0 70 7802.0 71 5626.0 72 3992.0 73 2697.0 74 1757.0 75 1139.5 76 702.0 77 418.0 78 278.5 79 183.5 80 112.5 81 74.5 82 50.5 83 27.5 84 17.0 85 12.5 86 9.5 87 7.5 88 5.5 89 4.0 90 3.0 91 1.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.769382213768613E-4 3 0.0 4 0.0 5 0.005186297600330312 6 2.517620194335103E-4 7 0.0 8 2.517620194335103E-5 9 1.5105721166010615E-4 10-11 0.0 12-13 0.0 14-15 6.294050485837757E-6 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.3847940424146048E-4 26-27 1.8885041026807378E-5 28-29 6.800193503284022E-4 30-31 2.58342949256971E-4 32-33 0.001476849904399214 34-35 3.478878652411445E-4 36-37 0.0013010042038936326 38-39 8.099069346782634E-4 40-41 7.564555467615817E-4 42-43 1.4180038012814628E-4 44-45 5.189819934656275E-5 46-47 4.7049567372693343E-4 48-49 0.0014809413705842525 50-51 0.0015839199912307826 52-53 0.0016207960269553718 54-55 0.0012151918858482312 56-57 0.0028602103627247107 58-59 4.15499719810148E-4 60-61 1.3724419825885147E-5 62-63 0.0019081053688969145 64-65 0.002515041655987029 66-67 0.0030629446362921845 68-69 7.442726096196597E-4 70-71 0.00455665792818421 72-73 0.001170127426876787 74-75 0.004589346378732532 76-77 2.866055976277875E-4 78-79 8.38123555581202E-4 80-81 0.0 82-83 2.267005659579629E-5 84-85 8.693235176032293E-4 86-87 0.0 88-89 3.108850009956092E-5 90-91 0.0027948497827122057 92-93 8.088767723025368E-4 94-95 8.014061151133333E-6 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 46.0 20-21 139.0 22-23 315.0 24-25 493.0 26-27 1347.0 28-29 3614.0 30-31 12242.0 32-33 16013.0 34-35 22771.0 36-37 36499.0 38-39 40925.0 40-41 41173.0 42-43 47392.0 44-45 55324.0 46-47 55824.0 48-49 52721.0 50-51 49212.0 52-53 47764.0 54-55 52194.0 56-57 54055.0 58-59 54012.0 60-61 54205.0 62-63 54635.0 64-65 58161.0 66-67 62676.0 68-69 64074.0 70-71 68672.0 72-73 59167.0 74-75 59268.0 76-77 62068.0 78-79 62862.0 80-81 62380.0 82-83 60042.0 84-85 59976.0 86-87 62595.0 88-89 64123.0 90-91 64157.0 92-93 64204.0 94-95 76197.0 96-97 245633.0 98-99 540999.0 100-101 5393841.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.72687893750302 #Duplication Level Percentage of deduplicated Percentage of total 1 90.01826233964961 77.16984677755528 2 6.971479274859835 11.952863196224408 3 1.7124440037865971 4.404074393995997 4 0.6187757877898892 2.1218286819728758 5 0.273065554470629 1.1704528865052874 6 0.13830838520797717 0.7114047716859475 7 0.08056090118015796 0.48343642357972816 8 0.05225523231874937 0.3583742379872418 9 0.03437244540932825 0.26519782197522734 >10 0.09924953334438298 1.2625716853759585 >50 9.873213067422362E-4 0.05444206801496931 >100 2.16571510232855E-4 0.0348086060654163 >500 2.2649165839216067E-5 0.010698449061615815 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.7764302915026544E-5 0.0 0.0 0.0 3 0.0 3.7764302915026544E-5 0.0 0.0 0.0 4 0.0 7.552860583005309E-5 0.0 0.0 0.0 5 0.0 1.0070480777340412E-4 0.0 0.0 0.0 6 7.552860583005309E-5 1.0070480777340412E-4 0.0 1.2588100971675515E-5 0.0 7 7.552860583005309E-5 1.0070480777340412E-4 0.0 1.2588100971675515E-5 0.0 8 7.552860583005309E-5 1.2588100971675515E-4 0.0 1.2588100971675515E-5 0.0 9 7.552860583005309E-5 2.0140961554680824E-4 0.0 2.517620194335103E-5 1.2588100971675515E-5 10-11 8.182265631589085E-5 2.0140961554680824E-4 0.0 5.035240388670206E-5 1.2588100971675515E-5 12-13 1.0070480777340412E-4 2.0770366603264597E-4 0.0 6.294050485837757E-5 1.2588100971675515E-5 14-15 1.1329290874507963E-4 3.3358467574940115E-4 0.0 6.294050485837757E-5 1.2588100971675515E-5 16-17 1.2588100971675515E-4 3.524668272069144E-4 0.0 6.294050485837757E-5 1.2588100971675515E-5 18-19 1.3846911068843065E-4 3.5876087769275215E-4 0.0 6.294050485837757E-5 1.2588100971675515E-5 20-21 1.5735126214594391E-4 3.9652518060777873E-4 0.0 8.182265631589085E-5 1.2588100971675515E-5 22-23 1.762334136034572E-4 4.3428948352280527E-4 0.0 1.3846911068843065E-4 1.2588100971675515E-5 24-25 1.762334136034572E-4 4.8464188740950727E-4 0.0 1.5735126214594391E-4 1.2588100971675515E-5 26-27 1.762334136034572E-4 5.224061903245338E-4 0.0 1.888215145751327E-4 1.2588100971675515E-5 28-29 1.762334136034572E-4 5.349942912962094E-4 0.0 3.2099657477772557E-4 1.2588100971675515E-5 30-31 1.762334136034572E-4 6.168169476121002E-4 0.0 9.944599767623655E-4 1.2588100971675515E-5 32-33 1.762334136034572E-4 6.168169476121002E-4 0.0 0.0025994428506509936 1.2588100971675515E-5 34-35 1.888215145751327E-4 7.049336544138287E-4 0.0 0.005041534439156043 1.2588100971675515E-5 36-37 1.888215145751327E-4 8.056384621872329E-4 0.0 0.008396263348107568 1.2588100971675515E-5 38-39 1.888215145751327E-4 8.685789670456105E-4 0.0 0.01644635391949406 1.2588100971675515E-5 40-41 2.0140961554680824E-4 9.566956738473391E-4 0.0 0.024603443349139793 1.8882151457513272E-5 42-43 2.1399771651848374E-4 0.001007048077734041 0.0 0.030607967512629012 2.517620194335103E-5 44-45 2.202917670043215E-4 0.0010951647845357697 0.0 0.03757548140045141 2.517620194335103E-5 46-47 2.3917391846183477E-4 0.001164399339879985 0.0 0.04523534084171596 3.7764302915026544E-5 48-49 2.517620194335103E-4 0.0011706933903658228 0.0 0.05263085016257532 3.7764302915026544E-5 50-51 2.6435012040518577E-4 0.001296574400082578 0.0 0.06056764782521674 4.40583534008643E-5 52-53 2.6435012040518577E-4 0.0013091625010542534 0.0 0.07713988275442754 5.035240388670206E-5 54-55 2.7064417089102356E-4 0.0013091625010542534 0.0 0.09650667609935032 5.035240388670206E-5 56-57 2.769382213768613E-4 0.001321750602025929 0.0 0.12103459084266006 5.6646454372539816E-5 58-59 2.769382213768613E-4 0.00134692680396928 0.0 0.1426105959081119 6.294050485837757E-5 60-61 2.895263223485368E-4 0.0013595149049409555 0.0 0.15174326316306247 6.294050485837757E-5 62-63 3.2729062526356336E-4 0.001397279207855982 0.0 0.1638026638939276 6.294050485837757E-5 64-65 3.2729062526356336E-4 0.0015357483185444126 0.0 0.16987642261276104 6.294050485837757E-5 66-67 3.2729062526356336E-4 0.0015483364195160883 0.0 0.17526412982863818 6.294050485837757E-5 68-69 3.398787262352389E-4 0.001586100722431115 0.0 0.1807210715998595 6.294050485837757E-5 70-71 3.5246682720691436E-4 0.0016427471768036546 0.0 0.1853220225050069 6.294050485837757E-5 72-73 3.776430291502654E-4 0.0016679233787470055 0.0 0.18919286355379714 7.552860583005309E-5 74-75 3.8393707963610315E-4 0.0016993936311761944 0.0 0.1920377743733958 7.552860583005309E-5 76-77 3.9023113012194094E-4 0.0017749222370062475 0.0 0.1951533293638855 7.552860583005309E-5 78-79 3.9023113012194094E-4 0.0018000984389495984 0.0 0.19706672071158016 7.552860583005309E-5 80-81 3.9023113012194094E-4 0.0018000984389495984 0.0 0.19769612576016393 7.552860583005309E-5 82-83 3.9023113012194094E-4 0.0018063924894354362 0.0 0.19806747473882838 8.81167068017286E-5 84-85 3.9652518060777873E-4 0.0018252746408929496 0.0 0.19823112005146015 8.81167068017286E-5 86-87 4.279954330369675E-4 0.001837862741864625 0.0 0.1983192367582619 8.81167068017286E-5 88 4.40583534008643E-4 0.0019511556506097048 0.0 0.19832553080874774 8.81167068017286E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8285 0.0 48.97679 1 GTATCAA 14320 0.0 34.84735 1 TCAACGC 16320 0.0 29.651262 4 ATCAACG 16355 0.0 29.535017 3 CAACGCA 16725 0.0 28.933249 5 AACGCAG 17480 0.0 27.707556 6 TATCAAC 17680 0.0 27.589964 2 ACGCAGA 20010 0.0 24.247139 7 CGCAGAG 20465 0.0 23.644773 8 GTACATG 19530 0.0 20.533758 1 TACATGG 19295 0.0 20.04556 2 ACATGGG 19605 0.0 19.398438 3 GCAGAGT 25185 0.0 19.093456 9 GAGTACT 13960 0.0 19.078241 12-13 CTTATAC 6300 0.0 18.020638 1 TGGTATC 4155 0.0 17.8695 2 CAGAGTA 24585 0.0 17.829874 10-11 AGAGTAC 22160 0.0 17.667542 10-11 CATGGGG 15140 0.0 17.535048 4 TATGCCG 3390 0.0 17.184742 42-43 >>END_MODULE