##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140057_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4567473 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.545143890286816 32.0 18.0 33.0 18.0 33.0 2 31.09951585920705 32.0 31.0 33.0 27.0 33.0 3 32.37589625598225 33.0 33.0 33.0 30.0 34.0 4 32.69975454698911 33.0 33.0 34.0 31.0 34.0 5 33.1009418118071 33.0 33.0 34.0 33.0 34.0 6 37.00562214598751 38.0 37.0 38.0 35.0 38.0 7 37.347919735924 38.0 38.0 38.0 37.0 38.0 8 37.29970051273428 38.0 38.0 38.0 36.0 38.0 9 37.45430131716159 38.0 38.0 38.0 37.0 38.0 10-11 37.49156995564068 38.0 38.0 38.0 37.0 38.0 12-13 37.50976458974142 38.0 38.0 38.0 37.0 38.0 14-15 37.46335271166354 38.0 38.0 38.0 37.0 38.0 16-17 37.4814795840063 38.0 38.0 38.0 37.0 38.0 18-19 37.40522253771396 38.0 38.0 38.0 37.0 38.0 20-21 37.494741924991864 38.0 38.0 38.0 37.0 38.0 22-23 37.50954354443925 38.0 38.0 38.0 37.0 38.0 24-25 37.51455485396343 38.0 38.0 38.0 37.0 38.0 26-27 37.49733384304551 38.0 38.0 38.0 37.0 38.0 28-29 37.43604589778678 38.0 38.0 38.0 37.0 38.0 30-31 37.47777446138826 38.0 38.0 38.0 37.0 38.0 32-33 37.47280477254732 38.0 38.0 38.0 37.0 38.0 34-35 37.45196403523278 38.0 38.0 38.0 37.0 38.0 36-37 37.432615415030426 38.0 38.0 38.0 37.0 38.0 38-39 37.413728269184375 38.0 38.0 38.0 37.0 38.0 40-41 37.40828162894847 38.0 38.0 38.0 37.0 38.0 42-43 37.343020571122835 38.0 38.0 38.0 37.0 38.0 44-45 37.35323313898725 38.0 38.0 38.0 37.0 38.0 46-47 37.33644786863597 38.0 38.0 38.0 37.0 38.0 48-49 37.30060214582006 38.0 38.0 38.0 37.0 38.0 50-51 37.26874717598556 38.0 38.0 38.0 37.0 38.0 52-53 37.24849343828732 38.0 38.0 38.0 37.0 38.0 54-55 37.23108082437946 38.0 38.0 38.0 37.0 38.0 56-57 37.2328253500674 38.0 38.0 38.0 37.0 38.0 58-59 37.22269748528615 38.0 38.0 38.0 37.0 38.0 60-61 37.21782157475491 38.0 38.0 38.0 37.0 38.0 62-63 37.218575038871144 38.0 38.0 38.0 37.0 38.0 64-65 37.21677883833014 38.0 38.0 38.0 37.0 38.0 66-67 37.21498620168775 38.0 38.0 38.0 37.0 38.0 68-69 37.2150987529198 38.0 38.0 38.0 37.0 38.0 70-71 37.220575337784375 38.0 38.0 38.0 37.0 38.0 72-73 37.19124839269488 38.0 38.0 38.0 36.0 38.0 74-75 37.18555237965213 38.0 38.0 38.0 36.0 38.0 76-77 37.18242453949601 38.0 38.0 38.0 36.0 38.0 78-79 37.1660728062122 38.0 38.0 38.0 36.0 38.0 80-81 37.15508232239267 38.0 38.0 38.0 36.0 38.0 82-83 37.154093540145624 38.0 38.0 38.0 36.0 38.0 84-85 37.13709543026921 38.0 38.0 38.0 36.0 38.0 86-87 37.11792385697389 38.0 38.0 38.0 36.0 38.0 88-89 37.09890941438094 38.0 38.0 38.0 36.0 38.0 90-91 37.08279762581891 38.0 38.0 38.0 36.0 38.0 92-93 37.075969472407834 38.0 38.0 38.0 36.0 38.0 94-95 37.03564488232871 38.0 38.0 38.0 36.0 38.0 96-97 37.04349863860937 38.0 38.0 38.0 36.0 38.0 98-99 37.03410895937884 38.0 38.0 38.0 36.0 38.0 100 35.361145289890736 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 15.0 20 52.0 21 133.0 22 347.0 23 810.0 24 1569.0 25 3068.0 26 5220.0 27 8526.0 28 13386.0 29 19984.0 30 28009.0 31 37466.0 32 49590.0 33 66300.0 34 99756.0 35 183317.0 36 598003.0 37 3451919.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.179653169268875 19.103123324429067 14.238923798783265 23.478299707518797 2 14.06781271524536 20.584845588206317 43.031206389894436 22.31613530665389 3 17.664734963950526 26.4230352319543 30.80738517775584 25.104844626339336 4 12.086201713726606 18.590104418789117 39.25621454138864 30.06747932609563 5 13.181957514636913 37.71397042402162 35.93058797255223 13.173484088789241 6 29.351387435065067 38.20421297890708 19.143168726054782 13.301230859973066 7 26.02206953385384 32.936264757339565 23.28580814818172 17.75585756062488 8 23.91202398175621 36.91534398021488 21.65081690703304 17.521815130995876 9 25.26769755146615 17.087585506893536 21.599713451741753 36.045003489898555 10-11 23.73479821336656 26.965829902004895 29.428230883904515 19.871141000724034 12-13 24.631311449460128 24.443483300284424 29.345307569415297 21.579897680840148 14-15 21.865714571899446 25.933226746302253 26.88942297955817 25.31163570224013 16-17 21.522863955627106 29.088272661929253 27.618696377625003 21.77016700481864 18-19 21.555540667673352 28.13645532223179 29.274809068384204 21.033194941710658 20-21 22.29772911532029 27.310025973047846 29.15198206780316 21.240262843828702 22-23 21.98439765241168 27.43603450202969 28.992196855687208 21.587370989871424 24-25 21.888626932355184 27.488963248781644 29.101804142757125 21.52060567610604 26-27 21.881046099560617 27.626123737623953 29.033474787405577 21.459355375409853 28-29 21.716804114701553 27.50804241303713 29.146653267573225 21.62850020468809 30-31 22.00885718933086 27.42223434241222 29.122087336393875 21.44682113186304 32-33 21.619118141063915 27.431769047184236 29.24128627827882 21.707826533473032 34-35 21.75651693334772 27.47753559845254 29.079537522871746 21.686409945328002 36-37 21.731182327514663 27.49612826467353 29.248603755102547 21.524085652709264 38-39 21.61558958805178 27.497141848855165 29.288223972823978 21.599044590269077 40-41 21.93315455901341 27.348000100147 29.16898778206582 21.549857558773773 42-43 21.99093541950251 27.34874233303028 29.025807797383408 21.634514450083802 44-45 21.856452002947236 27.639352265332672 28.897737640615205 21.60645809110489 46-47 22.113582296361713 27.40802757131484 28.546310464854805 21.93207966746864 48-49 21.97193583643257 27.424563413660024 28.665770408251962 21.937730341655442 50-51 21.792808838181223 27.624954580743722 28.707916709784993 21.874319871290066 52-53 22.002258391755365 27.553314276959973 28.77769074476562 21.66673658651904 54-55 21.976002125943804 27.46031546057779 28.623403113725864 21.940279299752543 56-57 22.152523900821013 27.683131802001476 28.348141868972565 21.816202428204946 58-59 21.85106658286149 27.949161970181336 28.67781693660161 21.52195451035557 60-61 22.114072583964113 28.153169625605045 28.281269197134062 21.451488593296773 62-63 21.89787897429906 28.406507716001496 28.155467648531733 21.540145661167713 64-65 21.906117358886764 28.321317824080865 28.174698699786415 21.59786611724595 66-67 21.95448848860241 28.3330996427944 28.052609009197987 21.6598028594052 68-69 21.932394510914953 28.173055416502468 28.20372993641428 21.690820136168306 70-71 22.0014057434807 27.82888139001375 28.26005544933369 21.90965741717186 72-73 22.084328219682707 27.649555583578216 28.32375852102279 21.94235767571629 74-75 22.008977229234088 27.755038601049524 28.274762017940212 21.96122215177618 76-77 22.067688129521994 27.682490762477457 28.18204144017475 22.067779667825803 78-79 22.0611051422355 27.737950539668837 28.172676063705147 22.028268254390515 80-81 22.058896527429358 27.694297960011525 28.16777330614772 22.07903220641139 82-83 22.120400959131768 27.692099293590555 28.196775667490204 21.990724079787473 84-85 22.267882139067364 27.65522753493072 28.10150176375437 21.975388562247545 86-87 22.03907236644454 27.670129514781898 28.222205264326618 22.068592854446944 88-89 22.15784919008088 27.666933267822447 28.091193157817507 22.084024384279168 90-91 22.176195278722787 27.743880684228415 28.117978553950834 21.961945483097963 92-93 22.234275983195225 27.71076501986575 28.041811152054457 22.013147844884568 94-95 22.153800556748514 27.80793123957676 28.024573786984103 22.013694416690623 96-97 22.218142130458578 27.914232288912515 28.097442511920406 21.7701830687085 98-99 23.253046786988822 29.81972159417664 28.304702332653203 18.622529286181333 100 22.10957265957758 30.76495877706627 22.323469004982936 24.80199955837322 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 520.0 1 533.0 2 884.5 3 1380.5 4 1710.5 5 2181.0 6 2674.5 7 3456.5 8 4727.5 9 5712.5 10 6047.0 11 6242.0 12 6832.5 13 8041.5 14 10048.5 15 12108.0 16 13643.5 17 14715.5 18 14752.5 19 13926.0 20 13097.5 21 12927.0 22 14223.0 23 17402.0 24 22633.0 25 29675.0 26 38818.0 27 49406.5 28 60042.5 29 71752.5 30 82852.5 31 93087.0 32 104395.0 33 115276.0 34 125976.0 35 136421.0 36 147792.0 37 158227.5 38 164619.5 39 169662.5 40 176014.5 41 181346.5 42 184322.5 43 187652.5 44 196650.5 45 206517.5 46 202251.5 47 194685.0 48 189594.0 49 182187.0 50 176597.0 51 170033.0 52 161702.0 53 152081.0 54 141812.0 55 130911.0 56 119692.0 57 108500.0 58 97082.0 59 84371.5 60 70236.0 61 56703.0 62 44708.0 63 34404.0 64 25834.5 65 19100.0 66 14081.5 67 10691.5 68 8131.5 69 5907.5 70 4248.5 71 3005.5 72 2082.5 73 1407.5 74 937.5 75 632.5 76 403.0 77 227.5 78 148.5 79 106.5 80 68.0 81 40.0 82 29.0 83 17.0 84 6.5 85 3.0 86 2.0 87 2.0 88 2.0 89 2.5 90 3.0 91 3.0 92 2.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.40833388615543E-4 3 0.0 4 0.0 5 0.0055391679381574885 6 3.5030311071351707E-4 7 0.0 8 2.1893944419594817E-5 9 1.094697220979741E-4 10-11 0.0 12-13 0.0 14-15 1.0946972209797409E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.532689698540737E-4 26-27 4.3794941136861925E-5 28-29 6.023422791383351E-4 30-31 2.740188180779202E-4 32-33 0.0014714966163813811 34-35 3.3027680499026234E-4 36-37 0.0011824483554629833 38-39 6.222391609549371E-4 40-41 6.929766813346731E-4 42-43 1.1244969984363868E-4 44-45 9.061435741451413E-5 46-47 4.4538922793033566E-4 48-49 0.001416094338132473 50-51 0.0016589644697375299 52-53 0.0015892393538199528 54-55 0.0011891768423704886 56-57 0.0024571803677223836 58-59 2.872764884183885E-4 60-61 1.206892369217824E-5 62-63 0.0016915832415943524 64-65 0.0021727244761954095 66-67 0.0026901582358512554 68-69 6.891695131455951E-4 70-71 0.004193237030767592 72-73 8.723152413869453E-4 74-75 0.003730119144927174 76-77 2.3538365574355736E-4 78-79 0.001003852946110268 80-81 0.0 82-83 4.0435555631035256E-5 84-85 8.438944914106513E-4 86-87 0.0 88-89 0.0 90-91 0.002668745478934468 92-93 5.253771355870592E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 27.0 20-21 87.0 22-23 171.0 24-25 305.0 26-27 911.0 28-29 2386.0 30-31 7985.0 32-33 10659.0 34-35 15012.0 36-37 23230.0 38-39 26804.0 40-41 26336.0 42-43 30460.0 44-45 35715.0 46-47 35851.0 48-49 33645.0 50-51 31452.0 52-53 31424.0 54-55 34103.0 56-57 35165.0 58-59 34235.0 60-61 34501.0 62-63 34679.0 64-65 38260.0 66-67 42117.0 68-69 43691.0 70-71 50280.0 72-73 38668.0 74-75 36420.0 76-77 38019.0 78-79 38210.0 80-81 37943.0 82-83 36310.0 84-85 36548.0 86-87 38008.0 88-89 38311.0 90-91 38814.0 92-93 38197.0 94-95 45247.0 96-97 137958.0 98-99 302265.0 100-101 3007064.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.27870345141554 #Duplication Level Percentage of deduplicated Percentage of total 1 91.4863726781524 80.76298363500301 2 6.236850930773354 11.011622275768518 3 1.3762913173370237 3.6449163919785943 4 0.4565545991765509 1.6121619228034652 5 0.18733422060673838 0.8268811053622158 6 0.09359997813791583 0.49577308278576293 7 0.05083767256033164 0.31415186740795775 8 0.0332797648113573 0.23503155909717321 9 0.020017332019135817 0.15903937054852346 >10 0.057231140010728966 0.7557326962698319 >50 0.0011078394763716724 0.06646806835947514 >100 4.880449049582067E-4 0.08711119503505341 >500 3.4482033110557955E-5 0.02812682958040806 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.3787888839189634E-5 0.0 2.1893944419594817E-5 0.0 3 0.0 4.3787888839189634E-5 0.0 2.1893944419594817E-5 0.0 4 0.0 8.757577767837927E-5 0.0 2.1893944419594817E-5 0.0 5 0.0 8.757577767837927E-5 0.0 2.1893944419594817E-5 0.0 6 0.0 8.757577767837927E-5 0.0 2.1893944419594817E-5 0.0 7 0.0 8.757577767837927E-5 0.0 2.1893944419594817E-5 0.0 8 0.0 8.757577767837927E-5 0.0 2.1893944419594817E-5 2.1893944419594817E-5 9 0.0 1.5325761093716372E-4 0.0 2.1893944419594817E-5 2.1893944419594817E-5 10-11 0.0 1.5325761093716372E-4 0.0 2.1893944419594817E-5 2.1893944419594817E-5 12-13 0.0 1.5325761093716372E-4 0.0 2.1893944419594817E-5 2.1893944419594817E-5 14-15 0.0 1.5325761093716372E-4 0.0 2.1893944419594817E-5 2.1893944419594817E-5 16-17 0.0 1.6420458314696113E-4 0.0 2.1893944419594817E-5 5.473486104898704E-5 18-19 0.0 1.8609852756655594E-4 0.0 2.1893944419594817E-5 6.568183325878445E-5 20-21 0.0 1.9704549977635335E-4 0.0 2.1893944419594817E-5 6.568183325878445E-5 22-23 0.0 2.40833388615543E-4 0.0 2.1893944419594817E-5 6.568183325878445E-5 24-25 0.0 2.9556824966453E-4 0.0 4.3787888839189634E-5 8.757577767837927E-5 26-27 0.0 3.2840916629392226E-4 0.0 9.852274988817668E-5 9.852274988817668E-5 28-29 0.0 3.2840916629392226E-4 0.0 3.2840916629392226E-4 1.0946972209797409E-4 30-31 0.0 4.159849439723015E-4 0.0 9.08598693413185E-4 1.204166943077715E-4 32-33 0.0 4.269319161820989E-4 0.0 0.0022331823307986717 1.5325761093716372E-4 34-35 0.0 5.145076938604782E-4 0.0 0.004061326689834839 1.7515155535675854E-4 36-37 0.0 6.020834715388574E-4 0.0 0.0068309106589135825 1.8609852756655594E-4 38-39 0.0 6.130304437486549E-4 0.0 0.01111117679294437 1.9704549977635335E-4 40-41 0.0 7.006062214270341E-4 0.0 0.015774586954318066 1.9704549977635335E-4 42-43 0.0 7.006062214270341E-4 0.0 0.020251898588125206 1.9704549977635335E-4 44-45 0.0 7.115531936368316E-4 0.0 0.024882467832869508 1.9704549977635335E-4 46-47 0.0 7.22500165846629E-4 0.0 0.030323113021138822 1.9704549977635335E-4 48-49 0.0 7.22500165846629E-4 0.0 0.035424402070904415 2.1893944419594817E-4 50-51 0.0 8.210229157348057E-4 0.0 0.041215350369887244 2.1893944419594817E-4 52-53 0.0 8.31969887944603E-4 0.0 0.04649179097500959 2.5178036082534037E-4 54-55 0.0 8.429168601544005E-4 0.0 0.05174633763571235 2.846212774547326E-4 56-57 0.0 8.538638323641979E-4 0.0 0.05719792979619146 2.846212774547326E-4 58-59 0.0 8.648108045739952E-4 0.0 0.06318592359495065 2.846212774547326E-4 60-61 0.0 8.976517212033876E-4 0.0 0.06852804603333178 2.846212774547326E-4 62-63 0.0 8.976517212033876E-4 0.0 0.07381543361066392 2.846212774547326E-4 64-65 0.0 0.001018068415511159 0.0 0.07891672266042951 2.846212774547326E-4 66-67 0.0 0.0010509093321405512 0.0 0.08442304968195762 2.9556824966453E-4 68-69 0.0 0.0011275381376091333 0.0 0.0895681266205624 3.0651522187432744E-4 70-71 0.0 0.0011713260264483228 0.0 0.09397975642111076 3.0651522187432744E-4 72-73 0.0 0.0011822729986581202 0.0 0.09790971944442803 3.0651522187432744E-4 74-75 0.0 0.0011822729986581202 0.0 0.10073403827455575 3.0651522187432744E-4 76-77 0.0 0.0012151139152875123 0.0 0.10355835710468347 3.0651522187432744E-4 78-79 0.0 0.0012479548319169046 0.0 0.1056163878801254 3.0651522187432744E-4 80-81 0.0 0.0012479548319169046 0.0 0.10633888804597202 3.3935613850371964E-4 82-83 0.0 0.0012479548319169046 0.0 0.10698475940635008 3.721970551331119E-4 84-85 0.0 0.0012698487763364995 0.0 0.10721464582275582 3.721970551331119E-4 86-87 0.0 0.0013245836373854865 0.0 0.107313168572644 3.721970551331119E-4 88 0.0 0.0014231063872736632 0.0 0.1073241155448538 3.940909995527067E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5230 0.0 50.329807 1 GTATCAA 9575 0.0 37.30901 1 CTTATAC 3825 0.0 36.97795 1 TCAACGC 11415 0.0 30.696167 4 ATCAACG 11495 0.0 30.556885 3 CAACGCA 11750 0.0 29.711899 5 TATCAAC 12070 0.0 29.349012 2 AACGCAG 12140 0.0 28.686687 6 TATACAC 5665 0.0 28.663546 3 ACGCAGA 13825 0.0 25.190336 7 CGCAGAG 14125 0.0 24.655321 8 TTATACA 6310 0.0 24.176037 2 ACATCTC 6860 0.0 21.988323 8 ACACATC 6880 0.0 21.61386 6 TACACAT 7670 0.0 21.05924 5 GCAGAGT 16870 0.0 20.567545 9 TATGCCG 4200 0.0 20.21636 42-43 GTGGTAT 2625 0.0 20.185457 1 CTCGTAT 4140 0.0 19.900913 38-39 GTACATG 12690 0.0 19.833525 1 >>END_MODULE