##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140056_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5035397 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.605999685824177 32.0 18.0 33.0 18.0 33.0 2 31.102213589117202 32.0 31.0 33.0 27.0 33.0 3 32.36545738101683 33.0 33.0 33.0 30.0 34.0 4 32.695457577624964 33.0 33.0 34.0 31.0 34.0 5 33.1006311915426 33.0 33.0 34.0 33.0 34.0 6 36.98909420647468 38.0 37.0 38.0 35.0 38.0 7 37.31923163158734 38.0 38.0 38.0 36.0 38.0 8 37.264910790549386 38.0 38.0 38.0 36.0 38.0 9 37.4205922591605 38.0 38.0 38.0 37.0 38.0 10-11 37.45882459714696 38.0 38.0 38.0 37.0 38.0 12-13 37.47928058105448 38.0 38.0 38.0 37.0 38.0 14-15 37.43461190845528 38.0 38.0 38.0 37.0 38.0 16-17 37.45165316657257 38.0 38.0 38.0 37.0 38.0 18-19 37.37270040475458 38.0 38.0 38.0 37.0 38.0 20-21 37.46161280835277 38.0 38.0 38.0 37.0 38.0 22-23 37.47737909008805 38.0 38.0 38.0 37.0 38.0 24-25 37.483143288842655 38.0 38.0 38.0 37.0 38.0 26-27 37.46604005294063 38.0 38.0 38.0 37.0 38.0 28-29 37.402847837782225 38.0 38.0 38.0 37.0 38.0 30-31 37.444657296199296 38.0 38.0 38.0 37.0 38.0 32-33 37.4386068321503 38.0 38.0 38.0 37.0 38.0 34-35 37.41917761060071 38.0 38.0 38.0 37.0 38.0 36-37 37.402009023667205 38.0 38.0 38.0 37.0 38.0 38-39 37.385298014505665 38.0 38.0 38.0 37.0 38.0 40-41 37.37456150849191 38.0 38.0 38.0 37.0 38.0 42-43 37.31129197268751 38.0 38.0 38.0 37.0 38.0 44-45 37.321498971658386 38.0 38.0 38.0 37.0 38.0 46-47 37.30788758244317 38.0 38.0 38.0 37.0 38.0 48-49 37.27441610826884 38.0 38.0 38.0 37.0 38.0 50-51 37.240411833245105 38.0 38.0 38.0 37.0 38.0 52-53 37.21855498443921 38.0 38.0 38.0 37.0 38.0 54-55 37.20277789282508 38.0 38.0 38.0 37.0 38.0 56-57 37.202769222641194 38.0 38.0 38.0 37.0 38.0 58-59 37.192335753370266 38.0 38.0 38.0 37.0 38.0 60-61 37.19004766914647 38.0 38.0 38.0 37.0 38.0 62-63 37.189683009475445 38.0 38.0 38.0 36.5 38.0 64-65 37.18693802022973 38.0 38.0 38.0 36.5 38.0 66-67 37.1852755018444 38.0 38.0 38.0 36.0 38.0 68-69 37.18444116857043 38.0 38.0 38.0 36.0 38.0 70-71 37.18786314723695 38.0 38.0 38.0 36.0 38.0 72-73 37.15756909020781 38.0 38.0 38.0 36.0 38.0 74-75 37.15236511511136 38.0 38.0 38.0 36.0 38.0 76-77 37.14546883433194 38.0 38.0 38.0 36.0 38.0 78-79 37.12685686922763 38.0 38.0 38.0 36.0 38.0 80-81 37.11420228682734 38.0 38.0 38.0 36.0 38.0 82-83 37.111548748241304 38.0 38.0 38.0 36.0 38.0 84-85 37.09141698357996 38.0 38.0 38.0 36.0 38.0 86-87 37.06839709140804 38.0 38.0 38.0 36.0 38.0 88-89 37.04955330755777 38.0 38.0 38.0 36.0 38.0 90-91 37.0320404750851 38.0 38.0 38.0 36.0 38.0 92-93 37.02378199409356 38.0 38.0 38.0 36.0 38.0 94-95 36.98096695710498 38.0 38.0 38.0 36.0 38.0 96-97 36.99291916630669 38.0 38.0 38.0 36.0 38.0 98-99 36.98128640927443 38.0 38.0 38.0 36.0 38.0 100 35.27711707677732 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 11.0 20 72.0 21 185.0 22 426.0 23 945.0 24 2004.0 25 3830.0 26 6241.0 27 10501.0 28 15835.0 29 23475.0 30 32750.0 31 43900.0 32 58168.0 33 78309.0 34 115896.0 35 210322.0 36 658379.0 37 3774148.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.2690212906748 19.08056107591914 14.318394358975073 23.332023274430995 2 14.016301031082614 20.648959057168796 43.13269268082076 22.202047230927832 3 17.84667624022495 26.30789588189372 30.635121719300386 25.21030615858094 4 12.055414895786768 18.51264160502141 39.586253079945834 29.84569041924599 5 13.232589301939552 37.57470750051091 36.07371557119499 13.118987626354556 6 29.353532019548883 38.34241209744573 19.222552750270737 13.081503132734648 7 26.007542205708905 32.85077621486449 23.527400123565233 17.614281455861374 8 23.667448663928585 37.25519556849242 21.680892291114283 17.396463476464717 9 25.031611312033785 17.417450635810873 21.84359038571262 35.707347666442715 10-11 23.60473265563768 27.161582294305692 29.50453559073892 19.729149459317707 12-13 24.49310352291984 24.573335528459822 29.53949807731148 21.394062871308854 14-15 21.69311791037707 26.147642990973996 27.069179159972805 25.09005993867613 16-17 21.354582369572846 29.277135447314283 27.797808196652618 21.570473986460254 18-19 21.398213487437037 28.40580395150571 29.420748751290116 20.775233809767137 20-21 22.07243799815882 27.535211274598442 29.39227019666639 21.000080530576348 22-23 21.80656604514027 27.52898671323977 29.205868719611665 21.458578522008295 24-25 21.617431756876794 27.63853068757076 29.315444138022396 21.42859341753005 26-27 21.600548207772732 27.792793351987626 29.22236429498941 21.384294145250234 28-29 21.46956170855048 27.752014652960742 29.37255836140831 21.405865277080473 30-31 21.80841259839827 27.54058956546394 29.194255097940463 21.456742738197327 32-33 21.669218013263816 27.66548002162172 29.2667736599057 21.39852830520877 34-35 21.779287448232196 27.817698675889975 29.150012905147264 21.253000970730568 36-37 21.652991865222354 27.68825819136096 29.171512134466788 21.487237808949896 38-39 21.5305388821417 27.718201437024415 29.34433396225124 21.406925718582652 40-41 21.789245833256615 27.614441405591624 29.21482333388436 21.381489427267404 42-43 21.773701064763376 27.665437848389512 29.0924693551491 21.46839173169802 44-45 21.73887629117471 27.844945302398198 28.97433768673619 21.4418407196909 46-47 21.834240069307288 27.69287176604665 28.759626441968038 21.713261722678027 48-49 21.754225148838994 27.79107533355126 28.76388770841044 21.69081180919931 50-51 21.658696564116887 27.92868961719964 28.801433373266683 21.611180445416785 52-53 21.847331254823118 27.863876752307775 28.752152298801537 21.536639694067567 54-55 21.837193933497648 27.779998555463365 28.69004602896137 21.692761482077614 56-57 21.916938478637963 27.950138468636677 28.55035443654196 21.582568616183405 58-59 21.76291628383795 28.06176664570125 28.719625542375077 21.455691528085723 60-61 21.907240512371278 28.140877692105327 28.562458470859763 21.389423324663632 62-63 21.799847741417526 28.245705210418127 28.495016614201152 21.4594304339632 64-65 21.7841817999115 28.21674373588558 28.49380948771153 21.50526497649139 66-67 21.855221883860736 28.21295791878124 28.344905562916235 21.586914634441793 68-69 21.82780465158745 28.150732816206137 28.444242898661066 21.57721963354535 70-71 21.852090061281892 27.903552356839068 28.507482460153184 21.736875121725856 72-73 21.903099751440152 27.808160619376043 28.51797863613865 21.77076099304515 74-75 21.788962536997282 27.932544696430483 28.45581688461694 21.822675881955295 76-77 21.9300533496924 27.899564918180808 28.348228859810497 21.822152872316295 78-79 21.86329099175465 27.927929620950685 28.35869016377827 21.850089223516388 80-81 21.84372624191684 27.897070959174243 28.375074849261207 21.88412794964771 82-83 21.9075527727097 27.89590794114913 28.41699758227903 21.779541703862144 84-85 22.01633361488077 27.872001193799772 28.303389338576007 21.808275852743446 86-87 21.85452887505404 27.875028693995535 28.40444814196936 21.865994288981067 88-89 21.95403383353715 27.88121960553578 28.31750122060687 21.847245340320203 90-91 21.980938152620023 27.939281301656692 28.289788885343636 21.789991660379645 92-93 21.991760194992235 27.94142803122577 28.29399238721034 21.77281938657166 94-95 21.91384196104434 28.021759455280677 28.239752179895543 21.82464640377944 96-97 21.99424698075912 28.11908196282358 28.320032131429905 21.566638924987398 98-99 23.057359348703528 30.01017563917253 28.574403370671792 18.35806164145215 100 21.902660637377277 30.958111364464212 22.570860316610954 24.568367681547556 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 593.0 1 567.5 2 906.5 3 1415.5 4 1805.0 5 2357.5 6 2898.0 7 3753.5 8 5067.5 9 6120.5 10 6419.0 11 6544.0 12 7164.0 13 8419.0 14 10495.5 15 12695.5 16 14290.5 17 15204.5 18 15298.5 19 14723.0 20 14264.5 21 14629.0 22 16505.0 23 20145.0 24 25874.5 25 33969.0 26 44249.5 27 55796.0 28 67836.5 29 80664.0 30 93311.0 31 105891.5 32 118625.5 33 130891.5 34 142634.5 35 153726.0 36 165457.5 37 175531.5 38 182673.5 39 188625.5 40 195102.0 41 202140.0 42 206098.5 43 208386.5 44 213463.0 45 219076.0 46 216181.0 47 210651.0 48 206340.0 49 198615.5 50 191654.0 51 183323.5 52 172649.5 53 161886.5 54 150588.0 55 138502.0 56 125863.5 57 112730.5 58 99961.5 59 86344.0 60 71047.0 61 57303.0 62 45418.5 63 34736.5 64 26000.5 65 19144.0 66 14081.0 67 10729.5 68 8157.0 69 5892.0 70 4244.0 71 3127.0 72 2251.5 73 1535.5 74 1024.5 75 651.0 76 378.5 77 238.5 78 164.0 79 94.5 80 63.5 81 47.0 82 35.0 83 25.0 84 17.0 85 13.5 86 8.5 87 4.5 88 3.0 89 2.0 90 1.5 91 1.0 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 1.9859407311876304E-4 3 0.0 4 0.0 5 0.005163445901087839 6 3.971881462375261E-4 7 0.0 8 0.0 9 3.1775051699002083E-4 10-11 0.0 12-13 0.0 14-15 9.929703655938151E-6 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 9.930487579988835E-5 26-27 9.931299244347302E-6 28-29 5.562976168408772E-4 30-31 2.2865348250686535E-4 32-33 0.0013941590313223718 34-35 2.495188527961532E-4 36-37 0.0013219289587365884 38-39 6.94394615201224E-4 40-41 7.284021184361611E-4 42-43 9.154084293045835E-5 44-45 1.4331720571168202E-4 46-47 4.641091502213027E-4 48-49 0.001506602608001847 50-51 0.0016427897122439316 52-53 0.0016748306761986652 54-55 0.00153784574749591 56-57 0.0029276406891623444 58-59 3.445177429867492E-4 60-61 1.0848427292646957E-5 62-63 0.0019348971602159346 64-65 0.002457016804782963 66-67 0.0030449384011184038 68-69 8.412209952608974E-4 70-71 0.004472517512170626 72-73 0.0010180680774116088 74-75 0.003876538255952361 76-77 3.1423834908947694E-4 78-79 9.513639270047822E-4 80-81 0.0 82-83 0.0 84-85 8.571911151054339E-4 86-87 0.0 88-89 0.0 90-91 0.0027334122875331056 92-93 7.028145085513072E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 23.0 20-21 94.0 22-23 228.0 24-25 318.0 26-27 973.0 28-29 2455.0 30-31 8032.0 32-33 10337.0 34-35 14842.0 36-37 23024.0 38-39 26446.0 40-41 25819.0 42-43 29858.0 44-45 35681.0 46-47 36422.0 48-49 34325.0 50-51 32074.0 52-53 31617.0 54-55 34442.0 56-57 35385.0 58-59 35193.0 60-61 35299.0 62-63 35342.0 64-65 37748.0 66-67 40724.0 68-69 42090.0 70-71 45802.0 72-73 37915.0 74-75 37189.0 76-77 38809.0 78-79 39501.0 80-81 39034.0 82-83 37663.0 84-85 37470.0 86-87 38791.0 88-89 39940.0 90-91 40649.0 92-93 39855.0 94-95 47708.0 96-97 154006.0 98-99 339821.0 100-101 3412453.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.53474919480563 #Duplication Level Percentage of deduplicated Percentage of total 1 91.66505661737155 81.1554279754665 2 6.182706932815074 10.94768815283537 3 1.2966953184180456 3.4440778439466095 4 0.41003215913002894 1.45208377481527 5 0.18228632841077208 0.806933718374484 6 0.09432272762575462 0.5010503420229689 7 0.05237638323049254 0.32459909671298764 8 0.03241068061053335 0.22955771832692157 9 0.021414123491978354 0.17063046473300092 >10 0.0613611602658045 0.8038826110668633 >50 8.656105464932571E-4 0.055873988409591055 >100 4.4086608554222846E-4 0.0865579165229128 >500 3.109199788742028E-5 0.021636396766535507 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 1.9859407311876302E-5 0.0 3 0.0 0.0 0.0 1.9859407311876302E-5 0.0 4 0.0 1.9859407311876302E-5 0.0 1.9859407311876302E-5 0.0 5 0.0 1.9859407311876302E-5 0.0 3.9718814623752604E-5 0.0 6 0.0 1.9859407311876302E-5 0.0 3.9718814623752604E-5 3.9718814623752604E-5 7 0.0 1.9859407311876302E-5 0.0 5.957822193562891E-5 3.9718814623752604E-5 8 0.0 1.9859407311876302E-5 0.0 5.957822193562891E-5 3.9718814623752604E-5 9 0.0 9.929703655938152E-5 0.0 5.957822193562891E-5 5.957822193562891E-5 10-11 1.9859407311876302E-5 9.929703655938152E-5 0.0 1.1915644387125782E-4 5.957822193562891E-5 12-13 1.9859407311876302E-5 1.0922674021531968E-4 0.0 1.7873466580688673E-4 5.957822193562891E-5 14-15 2.9789110967814455E-5 1.6880496215094859E-4 0.0 1.7873466580688673E-4 5.957822193562891E-5 16-17 4.9648518279690754E-5 1.7873466580688673E-4 0.0 1.7873466580688673E-4 7.943762924750521E-5 18-19 5.957822193562891E-5 1.9859407311876301E-4 0.0 1.9859407311876301E-4 7.943762924750521E-5 20-21 5.957822193562891E-5 2.1845348043063933E-4 0.0 2.3831288774251564E-4 7.943762924750521E-5 22-23 5.957822193562891E-5 2.1845348043063933E-4 0.0 2.581722950543919E-4 9.929703655938151E-5 24-25 6.950792559156705E-5 2.780317023662682E-4 0.0 2.9789110967814455E-4 1.1915644387125782E-4 26-27 7.943762924750521E-5 2.9789110967814455E-4 0.0 3.8725844258158794E-4 1.1915644387125782E-4 28-29 7.943762924750521E-5 2.9789110967814455E-4 0.0 5.461337010765983E-4 1.1915644387125782E-4 30-31 7.943762924750521E-5 3.1775051699002083E-4 0.0 0.0011220565131210111 1.1915644387125782E-4 32-33 1.0922674021531968E-4 3.3760992430189717E-4 0.0 0.002611512061511734 1.1915644387125782E-4 34-35 1.2908614752719596E-4 3.475396279578353E-4 0.0 0.00461731220001124 1.3901585118313413E-4 36-37 1.3901585118313413E-4 3.8725844258158794E-4 0.0 0.007437348038297676 1.3901585118313413E-4 38-39 1.3901585118313413E-4 4.56766368173155E-4 0.0 0.011568104759167946 1.3901585118313413E-4 40-41 1.3901585118313413E-4 5.163445901087838E-4 0.0 0.015510197110575392 1.3901585118313413E-4 42-43 1.3901585118313413E-4 5.262742937647219E-4 0.0 0.019819688497252554 1.4894555483907227E-4 44-45 1.3901585118313413E-4 5.858525157003509E-4 0.0 0.025231376989738843 1.5887525849501042E-4 46-47 1.3901585118313413E-4 6.355010339800417E-4 0.0 0.031179269479645794 1.5887525849501042E-4 48-49 1.3901585118313413E-4 6.355010339800417E-4 0.0 0.036849130267186475 1.9859407311876304E-4 50-51 1.3901585118313413E-4 7.24868366883485E-4 0.0 0.0423700454998881 1.9859407311876304E-4 52-53 1.3901585118313413E-4 7.347980705394232E-4 0.0 0.04750370229000812 2.0852377677470118E-4 54-55 1.3901585118313413E-4 7.347980705394232E-4 0.0 0.05274658582034346 2.1845348043063933E-4 56-57 1.3901585118313413E-4 7.347980705394232E-4 0.0 0.058664689199282596 2.1845348043063933E-4 58-59 1.3901585118313413E-4 7.546574778512995E-4 0.0 0.06438419850510298 2.283831840865775E-4 60-61 1.3901585118313413E-4 7.84446588819114E-4 0.0 0.07009377810726741 2.3831288774251564E-4 62-63 1.3901585118313413E-4 7.943762924750522E-4 0.0 0.07596223296792687 2.581722950543919E-4 64-65 1.3901585118313413E-4 8.638842180666191E-4 0.0 0.08131434323847753 2.581722950543919E-4 66-67 1.3901585118313413E-4 8.738139217225573E-4 0.0 0.08672603173096381 2.681019987103301E-4 68-69 1.3901585118313413E-4 8.837436253784955E-4 0.0 0.09208807170517042 2.7803170236626826E-4 70-71 1.3901585118313413E-4 8.936733290344336E-4 0.0 0.09685432946002073 2.7803170236626826E-4 72-73 1.3901585118313413E-4 8.936733290344336E-4 0.0 0.10031979603594314 2.7803170236626826E-4 74-75 1.3901585118313413E-4 9.333921436581863E-4 0.0 0.10316962098519739 2.7803170236626826E-4 76-77 1.3901585118313413E-4 9.631812546260006E-4 0.0 0.10601944593445164 2.7803170236626826E-4 78-79 1.3901585118313413E-4 9.731109582819388E-4 0.0 0.10758833911208987 2.7803170236626826E-4 80-81 1.3901585118313413E-4 9.731109582819388E-4 0.0 0.10815433222047835 2.7803170236626826E-4 82-83 1.4894555483907227E-4 9.731109582819388E-4 0.0 0.10866074710693119 2.7803170236626826E-4 84-85 1.5887525849501042E-4 9.731109582819388E-4 0.0 0.10891891940198559 2.7803170236626826E-4 86-87 1.5887525849501042E-4 9.731109582819388E-4 0.0 0.1089487085129534 2.7803170236626826E-4 88 1.5887525849501042E-4 0.0010724079948413203 0.0 0.1089487085129534 2.9789110967814455E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5600 0.0 48.4614 1 GTATCAA 10235 0.0 36.92747 1 ATCAACG 11500 0.0 32.115097 3 TCAACGC 11560 0.0 31.911087 4 CAACGCA 11825 0.0 31.195953 5 AACGCAG 12330 0.0 30.09053 6 TATCAAC 12510 0.0 29.798178 2 ACGCAGA 14050 0.0 26.34544 7 CGCAGAG 14290 0.0 25.812399 8 CTTATAC 3300 0.0 23.010817 1 GTGGTAT 3025 0.0 21.251724 1 GCAGAGT 17370 0.0 21.185741 9 TGGTATC 2685 0.0 21.050398 2 GTACATG 12290 0.0 20.677437 1 GAGTACT 10530 0.0 20.259672 12-13 TACATGG 12385 0.0 19.543402 2 ACATGGG 12195 0.0 19.034163 3 CAGAGTA 16920 0.0 18.868 10-11 AGAGTAC 15250 0.0 18.826635 10-11 TATACAC 5620 0.0 18.425032 3 >>END_MODULE