##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140055_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5638159 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.81765821077412 32.0 18.0 33.0 18.0 33.0 2 31.206995758721952 32.0 32.0 33.0 27.0 33.0 3 32.42765023121909 33.0 33.0 33.0 31.0 34.0 4 32.76205140720579 33.0 33.0 34.0 31.0 34.0 5 33.117111809014254 33.0 33.0 34.0 33.0 34.0 6 37.035076165819376 38.0 37.0 38.0 36.0 38.0 7 37.39567064355581 38.0 38.0 38.0 37.0 38.0 8 37.36385121455425 38.0 38.0 38.0 37.0 38.0 9 37.51124790911359 38.0 38.0 38.0 37.0 38.0 10-11 37.54155248193604 38.0 38.0 38.0 37.5 38.0 12-13 37.55455823434564 38.0 38.0 38.0 37.5 38.0 14-15 37.51866486915321 38.0 38.0 38.0 37.0 38.0 16-17 37.53540215875431 38.0 38.0 38.0 37.0 38.0 18-19 37.45486931106413 38.0 38.0 38.0 37.0 38.0 20-21 37.54933617900198 38.0 38.0 38.0 37.0 38.0 22-23 37.56256684594841 38.0 38.0 38.0 38.0 38.0 24-25 37.567182123876826 38.0 38.0 38.0 38.0 38.0 26-27 37.5473679647548 38.0 38.0 38.0 38.0 38.0 28-29 37.47661038183723 38.0 38.0 38.0 37.0 38.0 30-31 37.518489127276396 38.0 38.0 38.0 37.5 38.0 32-33 37.502501569347196 38.0 38.0 38.0 38.0 38.0 34-35 37.471280405483085 38.0 38.0 38.0 37.0 38.0 36-37 37.44199834746685 38.0 38.0 38.0 37.0 38.0 38-39 37.40293831757014 38.0 38.0 38.0 37.0 38.0 40-41 37.41515645418274 38.0 38.0 38.0 37.0 38.0 42-43 37.34078400481267 38.0 38.0 38.0 37.0 38.0 44-45 37.33120213865606 38.0 38.0 38.0 37.0 38.0 46-47 37.288532290304104 38.0 38.0 38.0 37.0 38.0 48-49 37.23493778276587 38.0 38.0 38.0 37.0 38.0 50-51 37.19635989981863 38.0 38.0 38.0 37.0 38.0 52-53 37.176320690678224 38.0 38.0 38.0 37.0 38.0 54-55 37.165270222342855 38.0 38.0 38.0 37.0 38.0 56-57 37.17262772583553 38.0 38.0 38.0 37.0 38.0 58-59 37.17150278200421 38.0 38.0 38.0 37.0 38.0 60-61 37.1703266632054 38.0 38.0 38.0 37.0 38.0 62-63 37.17751101998262 38.0 38.0 38.0 37.0 38.0 64-65 37.18451369475882 38.0 38.0 38.0 37.0 38.0 66-67 37.18850829881477 38.0 38.0 38.0 37.0 38.0 68-69 37.19543769635973 38.0 38.0 38.0 37.0 38.0 70-71 37.20602272869466 38.0 38.0 38.0 37.0 38.0 72-73 37.182104630633404 38.0 38.0 38.0 37.0 38.0 74-75 37.18800355864259 38.0 38.0 38.0 37.0 38.0 76-77 37.19470200169148 38.0 38.0 38.0 37.0 38.0 78-79 37.18554392368942 38.0 38.0 38.0 36.0 38.0 80-81 37.183799225159895 38.0 38.0 38.0 36.0 38.0 82-83 37.19093737442431 38.0 38.0 38.0 36.0 38.0 84-85 37.17662682974456 38.0 38.0 38.0 36.0 38.0 86-87 37.166431997059 38.0 38.0 38.0 36.0 38.0 88-89 37.151613371991466 38.0 38.0 38.0 36.0 38.0 90-91 37.14091321035349 38.0 38.0 38.0 36.0 38.0 92-93 37.142147346825396 38.0 38.0 38.0 36.0 38.0 94-95 37.10149352475176 38.0 38.0 38.0 36.0 38.0 96-97 37.113453773121876 38.0 38.0 38.0 36.0 38.0 98-99 37.10795721055018 38.0 38.0 38.0 36.0 38.0 100 35.53719240184647 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 16.0 20 49.0 21 168.0 22 391.0 23 906.0 24 1954.0 25 3464.0 26 6214.0 27 10425.0 28 17207.0 29 27004.0 30 37809.0 31 49307.0 32 62157.0 33 80234.0 34 114552.0 35 211024.0 36 736505.0 37 4278769.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.80463552021147 19.3953380881951 14.318379456840432 22.481646934752995 2 14.258643578694766 20.7023231931779 43.37534774291899 21.663685485208344 3 17.62002455056695 27.82796654014191 31.06187675799849 23.49013215129265 4 11.951383421432421 18.98671179723736 38.791101847251916 30.270802934078304 5 12.622681244005951 38.43800944432511 35.43124254263524 13.508066769033697 6 28.23127110069003 38.326151597732945 19.24957588001018 14.193001421566844 7 25.46716046851463 33.922402684989905 22.905189442156562 17.7052474043389 8 24.418812743242164 36.29712688029085 21.448249844763104 17.83581053170389 9 25.971467566016837 16.67890769038398 21.274674560515912 36.07495018308327 10-11 23.965074415247955 27.060384426902466 28.660880262511217 20.313660895338355 12-13 25.278623749347968 24.848935618878432 28.813669497437015 21.058771134336578 14-15 22.465072375575076 25.791255620850706 27.005189105167133 24.738482898407085 16-17 21.202027115588617 29.340800782666825 27.534244777417594 21.922927324326967 18-19 21.29166630455083 27.655818149151166 30.059608109668424 20.992907436629583 20-21 22.520018960313262 26.399859526958807 29.9687438615099 21.11137765121803 22-23 22.193857619390073 26.85417812373429 29.77436350141644 21.177600755459196 24-25 21.840274747457546 27.11453971889508 30.01670253383256 21.02848299981481 26-27 21.667584910336632 27.22597655901764 30.063460380350694 21.042978150295035 28-29 21.056129978674708 26.95263974810775 30.310987184413634 21.68024308880391 30-31 21.825344462331667 26.625686887581423 30.519458997250982 21.029509652835923 32-33 21.27717538493117 27.27932382966956 30.086146255313206 21.357354530086067 34-35 21.365994883928355 27.381942360570864 30.550333021992564 20.701729733508216 36-37 21.730265113530187 27.082455779601446 30.011273112508253 21.17600599436012 38-39 21.314313224577187 26.815267487812672 30.370502089967705 21.49991719764244 40-41 21.488147475777236 26.74511144902666 30.374536718177854 21.392204357018247 42-43 21.82663119563532 26.708284980048923 30.135624639822062 21.329459184493693 44-45 21.4806258233577 27.1489856530298 29.90879987251595 21.461588651096548 46-47 21.96114744222148 26.865204041432335 29.317119645987283 21.8565288703589 48-49 21.824257209236553 26.988171247806047 29.224561477819535 21.963010065137865 50-51 21.50600719969329 27.189794719853754 29.375840999317887 21.928357081135065 52-53 21.65757560099963 27.26839836869764 29.56935715484334 21.504668875459394 54-55 21.623113089051245 27.338704839571648 29.0896587723799 21.9485232989972 56-57 22.065720087552965 27.615496558583175 28.550838258352428 21.767945095511426 58-59 21.467191380781397 28.08902955862871 29.187722169271257 21.25605689131864 60-61 21.88054421801683 28.588502685461663 28.350848618813096 21.180104477708404 62-63 21.49946820666579 28.935993454411197 28.262208081930602 21.30233025699241 64-65 21.46887447535953 28.880944396764864 28.295403521698404 21.35477760617721 66-67 21.665105178035873 28.74339071585966 28.191042463767356 21.400461642337103 68-69 21.63564939096556 28.464875394736673 28.39805010388199 21.501425110415777 70-71 21.732019496703124 28.050665271958852 28.483267121040146 21.73404811029788 72-73 21.932894415813784 27.638191783551115 28.66354090307908 21.765372897556016 74-75 21.838425208841368 27.655281553186228 28.615202667576817 21.891090570395587 76-77 21.869150855941527 27.60621947038995 28.526547700063748 21.998081973604773 78-79 21.899036092240188 27.642749519050003 28.491530443131087 21.966683945578726 80-81 21.8890833346239 27.618481749928403 28.491222319894543 22.001212595553156 82-83 21.921144107764214 27.59957399246231 28.54752858834943 21.93175331142404 84-85 22.13195350549883 27.55349041892045 28.380360452596555 21.93419562298416 86-87 21.871406726727592 27.71045929083939 28.385436545944685 22.032697436488334 88-89 22.0875175493598 27.589934123712606 28.30796997176418 22.014578355163415 90-91 22.123065741050993 27.62667765581624 28.315750570787156 21.934506032345613 92-93 22.130396451999797 27.61802539189409 28.276455427285658 21.975122728820455 94-95 21.988246475747356 27.68003718171232 28.280478777866495 22.05123756467383 96-97 22.064858902842364 27.82613280448326 28.29480658504967 21.814201707624704 98-99 23.13992758431289 29.7370256620618 28.463968695110335 18.659078058514975 100 29.453701446464812 40.57426683211429 29.972031721420894 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1770.0 1 1642.0 2 2398.0 3 3553.0 4 4419.5 5 5885.0 6 7240.0 7 9123.0 8 11928.5 9 13730.0 10 13852.0 11 13890.5 12 15103.0 13 17862.0 14 23023.5 15 28664.0 16 32706.0 17 35025.5 18 34207.0 19 30639.5 20 26708.0 21 23819.5 22 23340.5 23 26395.5 24 32549.0 25 41448.0 26 53192.0 27 65913.0 28 79178.5 29 94168.0 30 107795.0 31 119698.5 32 133650.0 33 148975.5 34 161954.5 35 174101.0 36 186557.5 37 197221.0 38 205175.5 39 209385.0 40 213452.5 41 216650.0 42 222294.0 43 247333.0 44 258866.5 45 251203.5 46 245342.0 47 234058.5 48 225926.0 49 219716.0 50 213008.0 51 205053.0 52 196118.5 53 186971.0 54 176930.5 55 165440.5 56 151448.0 57 135965.0 58 121546.0 59 106254.0 60 90255.5 61 74665.0 62 58968.0 63 45516.0 64 35991.5 65 27447.5 66 19529.0 67 14723.0 68 11198.5 69 8057.0 70 6072.5 71 4549.0 72 3341.0 73 2467.0 74 1793.5 75 1291.0 76 843.0 77 499.5 78 380.5 79 278.5 80 174.0 81 117.5 82 95.0 83 72.0 84 51.5 85 37.0 86 22.0 87 12.5 88 12.0 89 11.0 90 9.0 91 5.0 92 2.0 93 2.0 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.4830800266540905E-4 3 0.0 4 0.0 5 0.004895214909689492 6 2.4830800266540905E-4 7 0.0 8 3.5472571809344146E-5 9 2.4830800266540905E-4 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 5.321535135169653E-5 26-27 0.0 28-29 5.590869240838939E-4 30-31 2.3103165675733385E-4 32-33 0.0015322890723913937 34-35 3.0392058447861487E-4 36-37 0.0012666258112468826 38-39 7.239497977012784E-4 40-41 7.93741449032493E-4 42-43 1.5634893956331742E-4 44-45 3.714568817494876E-5 46-47 4.977339955511972E-4 48-49 0.0017569354790612228 50-51 0.0019581737917635754 52-53 0.001967885275584399 54-55 0.0013015456098768717 56-57 0.003153626388596566 58-59 5.295068702517345E-4 60-61 3.0296264137372957E-5 62-63 0.002257682710379763 64-65 0.0024180800465098064 66-67 0.003475281848498228 68-69 0.0010092748105511502 70-71 0.005233117585023055 72-73 0.001165468231809872 74-75 0.004196577485128031 76-77 2.478355228287496E-4 78-79 9.126102661354058E-4 80-81 0.0 82-83 0.0 84-85 0.0011025286435163313 86-87 0.0 88-89 1.2158557314223324E-5 90-91 0.003302551011165949 92-93 5.620849705098998E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 39.0 20-21 152.0 22-23 397.0 24-25 633.0 26-27 1729.0 28-29 5068.0 30-31 13609.0 32-33 17528.0 34-35 24186.0 36-37 37797.0 38-39 46087.0 40-41 42924.0 42-43 49459.0 44-45 59077.0 46-47 60171.0 48-49 57242.0 50-51 52398.0 52-53 47848.0 54-55 50921.0 56-57 52951.0 58-59 52908.0 60-61 57281.0 62-63 55297.0 64-65 58553.0 66-67 66995.0 68-69 73673.0 70-71 89830.0 72-73 58679.0 74-75 52704.0 76-77 54896.0 78-79 56369.0 80-81 57118.0 82-83 53387.0 84-85 51454.0 86-87 53080.0 88-89 54268.0 90-91 55126.0 92-93 54010.0 94-95 59566.0 96-97 160994.0 98-99 1190293.0 100-101 2551462.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.94703637996864 #Duplication Level Percentage of deduplicated Percentage of total 1 89.1669259622806 74.8529917764554 2 7.369521560128655 12.372989890221668 3 1.9478379924525773 4.905456804441047 4 0.7230713887734777 2.427988007147263 5 0.30966442647998804 1.2997705437648839 6 0.16301351827042726 0.8210701049204544 7 0.0975957308147604 0.5735010655665422 8 0.06059799463560404 0.40696176481825574 9 0.042169553423918316 0.31860081318642314 >10 0.1154379899779658 1.4603102840703932 >50 0.0025197186756139777 0.14641145287870505 >100 0.0013966587065222743 0.2407238158406374 >500 1.767895585139724E-4 0.09697082893624194 >1k 7.071582140261822E-5 0.07625284775207603 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 1.7736285904672076E-5 0.0 5 0.0 0.0 0.0 1.7736285904672076E-5 0.0 6 0.0 0.0 0.0 1.7736285904672076E-5 0.0 7 0.0 0.0 0.0 3.547257180934415E-5 0.0 8 0.0 0.0 0.0 3.547257180934415E-5 0.0 9 0.0 0.0 0.0 5.320885771401622E-5 0.0 10-11 0.0 0.0 0.0 7.09451436186883E-5 0.0 12-13 0.0 0.0 0.0 7.09451436186883E-5 0.0 14-15 0.0 0.0 0.0 7.09451436186883E-5 0.0 16-17 0.0 0.0 0.0 8.868142952336037E-5 0.0 18-19 0.0 0.0 0.0 8.868142952336037E-5 0.0 20-21 0.0 0.0 0.0 9.75495724756964E-5 0.0 22-23 0.0 0.0 0.0 1.0641771542803244E-4 0.0 24-25 0.0 0.0 0.0 1.5962657314204867E-4 0.0 26-27 0.0 0.0 0.0 2.128354308560649E-4 0.0 28-29 0.0 0.0 0.0 5.764292919018424E-4 0.0 30-31 0.0 0.0 0.0 0.0016051338743728228 0.0 32-33 0.0 0.0 0.0 0.004043873186265233 0.0 34-35 0.0 0.0 0.0 0.0075113170806286236 0.0 36-37 0.0 0.0 0.0 0.012495213419841476 0.0 38-39 0.0 0.0 0.0 0.019820299498471042 0.0 40-41 0.0 0.0 0.0 0.027287275864337986 0.0 42-43 0.0 0.0 0.0 0.0344527353698255 0.0 44-45 0.0 0.0 0.0 0.04223009673902421 0.0 46-47 0.0 0.0 0.0 0.05132881140812098 0.0 48-49 0.0 0.0 0.0 0.06015261364569534 0.0 50-51 0.0 0.0 0.0 0.0690296247409837 0.0 52-53 0.0 0.0 0.0 0.07757851454703565 0.0 54-55 0.0 0.0 0.0 0.08499228205518858 0.0 56-57 0.0 0.0 0.0 0.09308002842771905 0.0 58-59 0.0 0.0 0.0 0.1014338190888196 0.0 60-61 0.0 0.0 0.0 0.10983195046468182 0.0 62-63 0.0 0.0 0.0 0.11783988355064126 0.0 64-65 0.0 0.0 0.0 0.12546648648965025 0.0 66-67 0.0 0.0 0.0 0.13272062742466112 0.0 68-69 0.0 0.0 0.0 0.1394781523543412 0.0 70-71 0.0 0.0 0.0 0.1448433788405045 0.0 72-73 0.0 0.0 0.0 0.1492685821737202 0.0 74-75 0.0 0.0 0.0 0.15307301550027236 0.0 76-77 0.0 0.0 0.0 0.15653159125168342 0.0 78-79 0.0 0.0 0.0 0.1587486269897674 0.0 80-81 0.0 0.0 0.0 0.15940486956824026 0.0 82-83 0.0 0.0 0.0 0.15993695814538045 0.0 84-85 0.0 0.0 0.0 0.16021187057690284 0.0 86-87 0.0 0.0 0.0 0.16032715643528322 0.0 88 0.0 0.0 0.0 0.16033602457823556 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11325 0.0 55.98546 1 CTTATAC 7100 0.0 44.85479 1 GTATCAA 22650 0.0 40.42377 1 TATACAC 9080 0.0 37.99716 3 TTATACA 9685 0.0 34.33845 2 ATCAACG 28135 0.0 32.307793 3 TATCAAC 28420 0.0 32.18751 2 TCAACGC 28595 0.0 31.831572 4 TGGTATC 4230 0.0 31.468105 2 GTGGTAT 4440 0.0 31.380674 1 CAACGCA 29005 0.0 31.367321 5 AACGCAG 29675 0.0 30.796663 6 ACGCAGA 33275 0.0 27.390028 7 TACACAT 12725 0.0 27.015339 5 CGCAGAG 33770 0.0 26.96399 8 ACACATC 12180 0.0 26.928493 6 CCGAACC 1250 0.0 26.20595 9 ACATCTC 12700 0.0 25.989157 8 ACCGAAC 1235 0.0 25.852741 8 GGACCGA 1390 0.0 25.654673 6 >>END_MODULE