##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140054_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6049998 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.405013191739897 32.0 18.0 33.0 18.0 33.0 2 31.020908436663944 32.0 31.0 33.0 27.0 33.0 3 32.348815652501045 33.0 33.0 33.0 30.0 34.0 4 32.6878096488627 33.0 33.0 34.0 31.0 34.0 5 33.07617638881864 33.0 33.0 34.0 33.0 34.0 6 37.009517027939516 38.0 37.0 38.0 35.0 38.0 7 37.385328061265476 38.0 38.0 38.0 37.0 38.0 8 37.35411284433482 38.0 38.0 38.0 37.0 38.0 9 37.50533355548217 38.0 38.0 38.0 37.0 38.0 10-11 37.53789819434651 38.0 38.0 38.0 37.5 38.0 12-13 37.554880183431465 38.0 38.0 38.0 37.5 38.0 14-15 37.51889603930448 38.0 38.0 38.0 37.0 38.0 16-17 37.535522821660436 38.0 38.0 38.0 37.0 38.0 18-19 37.46343064906799 38.0 38.0 38.0 37.0 38.0 20-21 37.55028718931205 38.0 38.0 38.0 37.5 38.0 22-23 37.56412620774171 38.0 38.0 38.0 38.0 38.0 24-25 37.56617786059405 38.0 38.0 38.0 38.0 38.0 26-27 37.54672058357558 38.0 38.0 38.0 38.0 38.0 28-29 37.48018831279427 38.0 38.0 38.0 37.5 38.0 30-31 37.51800789372508 38.0 38.0 38.0 38.0 38.0 32-33 37.50391605542546 38.0 38.0 38.0 38.0 38.0 34-35 37.47505210312339 38.0 38.0 38.0 37.5 38.0 36-37 37.446889444021565 38.0 38.0 38.0 37.0 38.0 38-39 37.42003850537777 38.0 38.0 38.0 37.0 38.0 40-41 37.40155495125545 38.0 38.0 38.0 37.0 38.0 42-43 37.32053968809697 38.0 38.0 38.0 37.0 38.0 44-45 37.3095909881076 38.0 38.0 38.0 37.0 38.0 46-47 37.2629795507215 38.0 38.0 38.0 37.0 38.0 48-49 37.20257158588586 38.0 38.0 38.0 37.0 38.0 50-51 37.16158361528362 38.0 38.0 38.0 37.0 38.0 52-53 37.14516924338662 38.0 38.0 38.0 37.0 38.0 54-55 37.13500278786888 38.0 38.0 38.0 37.0 38.0 56-57 37.14403865250525 38.0 38.0 38.0 37.0 38.0 58-59 37.144962889917736 38.0 38.0 38.0 37.0 38.0 60-61 37.15234122192559 38.0 38.0 38.0 37.0 38.0 62-63 37.16463255483292 38.0 38.0 38.0 37.0 38.0 64-65 37.171441267165825 38.0 38.0 38.0 37.0 38.0 66-67 37.181730695707365 38.0 38.0 38.0 37.0 38.0 68-69 37.19232224595924 38.0 38.0 38.0 37.0 38.0 70-71 37.207787395075044 38.0 38.0 38.0 37.0 38.0 72-73 37.187305852888805 38.0 38.0 38.0 37.0 38.0 74-75 37.19160052683061 38.0 38.0 38.0 37.0 38.0 76-77 37.194439523910575 38.0 38.0 38.0 37.0 38.0 78-79 37.182617274533484 38.0 38.0 38.0 36.0 38.0 80-81 37.179615313454974 38.0 38.0 38.0 36.0 38.0 82-83 37.182566330427335 38.0 38.0 38.0 36.0 38.0 84-85 37.17038354829651 38.0 38.0 38.0 36.0 38.0 86-87 37.160551580297906 38.0 38.0 38.0 36.0 38.0 88-89 37.14548455903167 38.0 38.0 38.0 36.0 38.0 90-91 37.13722283509689 38.0 38.0 38.0 36.0 38.0 92-93 37.13569629761324 38.0 38.0 38.0 36.0 38.0 94-95 37.099569687674574 38.0 38.0 38.0 36.0 38.0 96-97 37.1153654112303 38.0 38.0 38.0 36.0 38.0 98-99 37.11060706654047 38.0 38.0 38.0 36.0 38.0 100 35.55602330600075 38.0 36.0 38.0 30.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 16.0 20 59.0 21 147.0 22 387.0 23 916.0 24 1983.0 25 3925.0 26 6972.0 27 11799.0 28 19305.0 29 30035.0 30 42233.0 31 54993.0 32 69104.0 33 88562.0 34 125631.0 35 228287.0 36 794521.0 37 4571121.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.88776657446829 19.28270058932251 14.455178332290359 22.374354503918845 2 14.326786426802594 21.110971900412263 42.91758223412896 21.64465943865618 3 17.6201215273129 27.359149540214723 31.11655574101016 23.90417319146221 4 12.134516408104599 18.912766582732754 39.219533626292105 29.733183382870536 5 12.838662092987274 37.996653711728605 35.580330754247164 13.584353441036958 6 28.430098682987165 38.365207548654304 19.386579688954292 13.818114079404243 7 25.387033185796092 33.87715169492618 23.466090402013357 17.26972471726437 8 23.987449911132188 36.35864612825428 21.786357910590702 17.867546050022835 9 25.776501668515984 16.918730569173125 21.878559408474764 35.42620835383613 10-11 23.723272305213985 27.25513297690346 29.002464133045997 20.019130584836557 12-13 24.93729749993306 25.106719043543485 29.20492700989323 20.75105644663023 14-15 22.127571127095507 26.14787857350354 27.56319320793108 24.161357091469874 16-17 20.901486248425204 29.3160344846395 28.167207658581045 21.61527160835425 18-19 20.928684604523838 27.86433152539885 30.763101078711102 20.44388279136621 20-21 21.997011863289522 26.83006431155168 30.69708809565211 20.475835729506684 22-23 21.744373591615794 26.896366477222244 30.460621443268128 20.898638487893837 24-25 21.365591267201232 27.098996973256394 30.641392088808505 20.894019670733872 26-27 21.214008784403173 27.255945790687637 30.666513346196933 20.86353207871226 28-29 21.07703709597235 27.22633851998706 30.719197770061722 20.977426613978864 30-31 21.428909801099895 27.16774811000013 30.524355084440035 20.87898700445994 32-33 21.35819293677676 27.121497437016846 30.48207739143443 21.038232234771964 34-35 21.364115027407255 27.231757323138737 30.52613153947275 20.877996109981257 36-37 21.25111106284404 27.287124803753116 30.47075855349618 20.991005579906666 38-39 21.12965704786689 27.204323662687024 30.58117286155243 21.084846427893662 40-41 21.391806031133314 27.077316834054123 30.44728130984519 21.08359582496737 42-43 21.450482629104105 27.14498286368081 30.178603574997254 21.22593093221783 44-45 21.382456306387727 27.32826876375361 30.03893329148716 21.250341638371502 46-47 21.522217786561406 27.368020396679622 29.617555210176917 21.49220660658206 48-49 21.51720857082694 27.45715527450975 29.44918963430421 21.5764465203591 50-51 21.480642057268348 27.657824492136236 29.341950397146732 21.51958305344868 52-53 21.636071583683847 27.593161065477556 29.293637461901696 21.4771298889369 54-55 21.59073884615232 27.612487614877285 29.13378218944907 21.662991349521324 56-57 21.697949462600967 27.7258618115168 28.962328672259385 21.613860053622854 58-59 21.527157379830378 27.884855566954048 29.188489444618654 21.399497608596914 60-61 21.77743337365102 27.910464177918254 28.998545278724823 21.313557169705895 62-63 21.576517737894196 28.02953974770909 28.94811427105324 21.44582824334347 64-65 21.566454259162963 28.00692702447755 28.92626134735788 21.500357369001605 66-67 21.672882933191815 27.993777758676025 28.789076298412088 21.544263009720073 68-69 21.65748621174625 27.85621358270889 28.933810457937003 21.552489747607858 70-71 21.645386309095144 27.652874689151158 28.99166985701437 21.71006914473933 72-73 21.764812471270623 27.579798541108424 28.943117617125154 21.7122713704958 74-75 21.673799876088676 27.671769875137763 28.8819998064671 21.772430442306458 76-77 21.781739665916515 27.572217954501394 28.774441810236652 21.87160056934544 78-79 21.78259056036998 27.636761626861766 28.706340062380598 21.874307750387658 80-81 21.760402295370472 27.692666063310895 28.6388981174318 21.908033523886832 82-83 21.81491443235363 27.688035931949535 28.71404658441999 21.783003051276854 84-85 22.018911155567455 27.62247405343562 28.54656507830262 21.81204971269431 86-87 21.792010295799596 27.71159482572404 28.58408880581913 21.912306072657238 88-89 21.884559153712402 27.673829999370366 28.497928078838868 21.943682768078368 90-91 21.98051421035342 27.723088838568433 28.471322470028817 21.82507448104933 92-93 21.96455698727979 27.719480380057703 28.399371257399697 21.916591375262804 94-95 21.907333935750913 27.80570200774785 28.368792872827846 21.91817118367339 96-97 21.93917757591375 27.877585412606148 28.45662247916242 21.726614532317683 98-99 23.003055016105435 29.807205835269716 28.639332181303857 18.55040696732099 100 29.01900303771597 40.792426485589104 30.188570476694938 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2097.0 1 1852.5 2 2647.0 3 4058.0 4 5013.5 5 6459.5 6 7936.5 7 10323.5 8 13558.0 9 15612.0 10 15752.5 11 15435.0 12 16713.5 13 20020.5 14 25849.0 15 32317.5 16 37099.5 17 39557.0 18 38542.0 19 34746.0 20 30698.5 21 27888.5 22 27977.5 23 31909.5 24 39109.5 25 49357.0 26 63034.0 27 77753.5 28 92372.0 29 108426.0 30 123860.0 31 138142.5 32 152883.5 33 167318.0 34 180831.5 35 193519.5 36 206894.0 37 218615.0 38 227048.5 39 233457.0 40 239283.5 41 244281.5 42 248455.0 43 257565.0 44 260945.5 45 257581.5 46 254153.5 47 248762.5 48 243918.5 49 237741.0 50 229612.0 51 220945.5 52 211195.5 53 200052.0 54 188534.5 55 174559.5 56 158216.0 57 141949.5 58 126719.0 59 110534.5 60 93133.0 61 75816.0 62 59624.5 63 46122.0 64 36016.5 65 27485.5 66 19764.0 67 14945.5 68 11514.0 69 8437.5 70 6285.0 71 4638.0 72 3342.0 73 2435.5 74 1812.5 75 1373.5 76 908.0 77 531.0 78 409.0 79 283.0 80 162.0 81 112.5 82 88.5 83 71.5 84 55.0 85 41.5 86 28.5 87 15.5 88 9.0 89 8.5 90 7.5 91 5.0 92 2.5 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.644628973431066E-4 3 0.0 4 0.0 5 0.00512396863602269 6 3.1404969059493904E-4 7 0.0 8 1.6528931083944162E-5 9 1.8181824192338577E-4 10-11 0.0 12-13 0.0 14-15 8.264465541972081E-6 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 9.918590687286425E-5 26-27 3.306694874978414E-5 28-29 6.20287264129565E-4 30-31 2.4017293113587801E-4 32-33 0.00142863514759753 34-35 2.50172076693419E-4 36-37 0.0012998396249484677 38-39 7.01613914880538E-4 40-41 7.41929913206992E-4 42-43 9.465669008100289E-5 44-45 7.828753498039289E-5 46-47 5.197095440253441E-4 48-49 0.0016231755217283002 50-51 0.0016330410580806841 52-53 0.0017510914680804296 54-55 0.0012722621678738868 56-57 0.0029657984680251954 58-59 3.869034868308433E-4 60-61 9.547920295870953E-6 62-63 0.002115484798116581 64-65 0.002336457277732037 66-67 0.003129244223152743 68-69 7.329717607066088E-4 70-71 0.0047763818205001085 72-73 0.0011370165986851334 74-75 0.003916583884325475 76-77 3.289653805322957E-4 78-79 0.0011081250309306744 80-81 1.0910591412971776E-5 82-83 2.2129940370875672E-5 84-85 9.196748164435615E-4 86-87 0.0 88-89 1.1531813448008762E-5 90-91 0.0031246130804495416 92-93 5.700263067140548E-4 94-95 0.0 96-97 1.2288300235615867E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 42.0 20-21 175.0 22-23 402.0 24-25 734.0 26-27 1985.0 28-29 5422.0 30-31 16564.0 32-33 22101.0 34-35 29821.0 36-37 44618.0 38-39 52356.0 40-41 51499.0 42-43 59068.0 44-45 70615.0 46-47 71547.0 48-49 65983.0 50-51 60631.0 52-53 57675.0 54-55 61948.0 56-57 62770.0 58-59 61864.0 60-61 61057.0 62-63 60855.0 64-65 64107.0 66-67 68160.0 68-69 70885.0 70-71 73389.0 72-73 63808.0 74-75 62287.0 76-77 64058.0 78-79 64358.0 80-81 64857.0 82-83 61238.0 84-85 60080.0 86-87 61702.0 88-89 62998.0 90-91 62584.0 92-93 61837.0 94-95 67839.0 96-97 175491.0 98-99 1249173.0 100-101 2671415.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.89359833822573 #Duplication Level Percentage of deduplicated Percentage of total 1 90.8046136004446 78.90339621454821 2 6.6221284942394005 11.50841147045116 3 1.5117669326313028 3.94088605875228 4 0.5228794384941615 1.817395036313147 5 0.21443084650868827 0.9316333923925847 6 0.11556593159183562 0.6025163784794302 7 0.059896696045215025 0.3643247613557795 8 0.036256875361627236 0.25203922917378796 9 0.02506624236675248 0.1960286396458686 >10 0.08505849135753712 1.18115342576705 >50 0.0014828184697081952 0.09379968406671872 >100 7.67229585937947E-4 0.1296832925434696 >500 2.8800967763792852E-5 0.0210470318840475 >1k 5.760193550157971E-5 0.057685384626427944 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 1.652893108394416E-5 0.0 4 0.0 1.652893108394416E-5 0.0 1.652893108394416E-5 0.0 5 0.0 1.652893108394416E-5 0.0 3.305786216788832E-5 0.0 6 0.0 1.652893108394416E-5 0.0 3.305786216788832E-5 1.652893108394416E-5 7 0.0 1.652893108394416E-5 0.0 3.305786216788832E-5 1.652893108394416E-5 8 0.0 4.958679325183248E-5 0.0 4.958679325183248E-5 1.652893108394416E-5 9 0.0 6.611572433577663E-5 0.0 6.611572433577663E-5 3.305786216788832E-5 10-11 0.0 6.611572433577663E-5 0.0 7.438018987774873E-5 3.305786216788832E-5 12-13 0.0 6.611572433577663E-5 0.0 8.26446554197208E-5 3.305786216788832E-5 14-15 0.0 9.917358650366496E-5 0.0 1.0743805204563704E-4 5.7851258793804555E-5 16-17 0.0 1.1570251758760912E-4 0.0 1.1570251758760912E-4 6.611572433577663E-5 18-19 0.0 1.239669831295812E-4 0.0 1.1570251758760912E-4 8.26446554197208E-5 20-21 0.0 1.3223144867155327E-4 0.0 1.1570251758760912E-4 8.26446554197208E-5 22-23 0.0 1.8181824192338577E-4 0.0 1.1570251758760912E-4 9.090912096169288E-5 24-25 0.0 2.0661163854930202E-4 0.0 1.4049591421352536E-4 9.917358650366496E-5 26-27 0.0 2.148761040912741E-4 0.0 2.0661163854930202E-4 9.917358650366496E-5 28-29 0.0 2.148761040912741E-4 0.0 4.8760346697635274E-4 9.917358650366496E-5 30-31 0.0 2.809918284270507E-4 0.0 0.0016942154361042764 9.917358650366496E-5 32-33 0.0 2.975207595109949E-4 0.0 0.004446282461580979 9.917358650366496E-5 34-35 0.0 3.388430872208553E-4 0.0 0.008115705162216583 9.917358650366496E-5 36-37 0.0 3.8016541493071567E-4 0.0 0.013206615936071385 9.917358650366496E-5 38-39 0.0 4.13223277098604E-4 0.0 0.020719015113724003 9.917358650366496E-5 40-41 0.0 5.123968636022689E-4 0.0 0.02876860455160481 9.917358650366496E-5 42-43 0.0 5.20661329144241E-4 0.0 0.03607439209070813 1.0743805204563704E-4 44-45 0.0 5.537191913121294E-4 0.0 0.04482646109965656 1.1570251758760912E-4 46-47 0.0 5.785125879380456E-4 0.0 0.05436365433509234 1.1570251758760912E-4 48-49 0.0 5.785125879380456E-4 0.0 0.06388431863944417 1.1570251758760912E-4 50-51 0.0 7.024795710676268E-4 0.0 0.07270250337272838 1.1570251758760912E-4 52-53 0.0 7.107440366095988E-4 0.0 0.08196696924527909 1.239669831295812E-4 54-55 0.0 7.272729676935431E-4 0.0 0.09064465806434978 1.3223144867155327E-4 56-57 0.0 7.438018987774872E-4 0.0 0.09790085881020126 1.3223144867155327E-4 58-59 0.0 7.438018987774872E-4 0.0 0.1053471422635181 1.4049591421352536E-4 60-61 0.0 7.768597609453755E-4 0.0 0.1126611942681634 1.4876037975549745E-4 62-63 0.0 7.933886920293197E-4 0.0 0.11995045287618278 1.4876037975549745E-4 64-65 0.0 9.090912096169288E-4 0.0 0.12690913286252326 1.4876037975549745E-4 66-67 0.0 9.090912096169288E-4 0.0 0.13376037479681813 1.4876037975549745E-4 68-69 0.0 9.25620140700873E-4 0.0 0.14025624471280818 1.4876037975549745E-4 70-71 0.0 9.33884606242845E-4 0.0 0.1463223624206157 1.4876037975549745E-4 72-73 0.0 9.421490717848171E-4 0.0 0.15170252948843949 1.652893108394416E-4 74-75 0.0 9.421490717848171E-4 0.0 0.15580996886279963 1.652893108394416E-4 76-77 0.0 9.504135373267892E-4 0.0 0.15953724282222903 1.652893108394416E-4 78-79 0.0 9.586780028687612E-4 0.0 0.16207443374361447 1.652893108394416E-4 80-81 0.0 9.586780028687612E-4 0.0 0.1628678224356438 1.735537763814137E-4 82-83 0.0 9.586780028687612E-4 0.0 0.16352897967900154 1.8181824192338577E-4 84-85 0.0 9.586780028687612E-4 0.0 0.16381823597297057 1.8181824192338577E-4 86-87 0.0 9.752069339527055E-4 0.0 0.16396699635272607 1.9008270746535784E-4 88 0.0 9.752069339527055E-4 0.0 0.16398352528381002 1.9834717300732993E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11245 0.0 55.20942 1 GTATCAA 22180 0.0 38.960293 1 TGGTATC 4060 0.0 32.955555 2 GTGGTAT 4175 0.0 32.836666 1 ATCAACG 27530 0.0 31.015146 3 TCAACGC 27735 0.0 30.800745 4 TATCAAC 28065 0.0 30.629276 2 CAACGCA 28415 0.0 30.049164 5 AACGCAG 29185 0.0 29.29723 6 ACGCAGA 32805 0.0 26.039211 7 CGCAGAG 33135 0.0 25.767456 8 GCAGAGT 36570 0.0 23.121992 9 CTTATAC 4545 0.0 23.00759 1 GAGTACT 22410 0.0 21.042774 12-13 GTACATG 25085 0.0 20.120913 1 TATACAC 6225 0.0 20.03893 3 TACATGG 24655 0.0 20.020987 2 CAGAGTA 36630 0.0 19.808062 10-11 ACATGGG 24875 0.0 19.347404 3 GTACTTT 24660 0.0 18.93107 14-15 >>END_MODULE