##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140052_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8777891 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.53187605086461 33.0 32.0 33.0 27.0 34.0 2 32.04539142716627 33.0 32.0 33.0 30.0 34.0 3 32.72037668273621 33.0 33.0 34.0 31.0 34.0 4 32.73080276344284 33.0 33.0 34.0 31.0 34.0 5 33.23763339052627 34.0 33.0 34.0 33.0 34.0 6 37.3090180773491 38.0 38.0 38.0 37.0 38.0 7 37.40236874666136 38.0 38.0 38.0 37.0 38.0 8 37.51858504508657 38.0 38.0 38.0 37.0 38.0 9 37.53647840922153 38.0 38.0 38.0 37.0 38.0 10-11 37.553620112165895 38.0 38.0 38.0 37.5 38.0 12-13 37.57588958441157 38.0 38.0 38.0 38.0 38.0 14-15 37.546542102197435 38.0 38.0 38.0 38.0 38.0 16-17 37.570486976883174 38.0 38.0 38.0 38.0 38.0 18-19 37.484952194097644 38.0 38.0 38.0 37.5 38.0 20-21 37.56237218604943 38.0 38.0 38.0 38.0 38.0 22-23 37.57077944241314 38.0 38.0 38.0 38.0 38.0 24-25 37.572638528513856 38.0 38.0 38.0 38.0 38.0 26-27 37.550343468750604 38.0 38.0 38.0 38.0 38.0 28-29 37.48356706360264 38.0 38.0 38.0 37.5 38.0 30-31 37.52123213401588 38.0 38.0 38.0 38.0 38.0 32-33 37.512495016500594 38.0 38.0 38.0 38.0 38.0 34-35 37.493540248610095 38.0 38.0 38.0 37.5 38.0 36-37 37.476457194586004 38.0 38.0 38.0 37.0 38.0 38-39 37.467669727155595 38.0 38.0 38.0 37.0 38.0 40-41 37.44839191592824 38.0 38.0 38.0 37.0 38.0 42-43 37.386126188331254 38.0 38.0 38.0 37.0 38.0 44-45 37.39977679024099 38.0 38.0 38.0 37.0 38.0 46-47 37.38499406416434 38.0 38.0 38.0 37.0 38.0 48-49 37.3556366089464 38.0 38.0 38.0 37.0 38.0 50-51 37.32865345080232 38.0 38.0 38.0 37.0 38.0 52-53 37.31196409678063 38.0 38.0 38.0 37.0 38.0 54-55 37.30279851515233 38.0 38.0 38.0 37.0 38.0 56-57 37.30551848194835 38.0 38.0 38.0 37.0 38.0 58-59 37.301498760895456 38.0 38.0 38.0 37.0 38.0 60-61 37.30262450933269 38.0 38.0 38.0 37.0 38.0 62-63 37.30500510357082 38.0 38.0 38.0 37.0 38.0 64-65 37.30622899743682 38.0 38.0 38.0 37.0 38.0 66-67 37.30926480499757 38.0 38.0 38.0 37.0 38.0 68-69 37.310328725926794 38.0 38.0 38.0 37.0 38.0 70-71 37.31752154712548 38.0 38.0 38.0 37.0 38.0 72-73 37.29507808022451 38.0 38.0 38.0 37.0 38.0 74-75 37.29364687775565 38.0 38.0 38.0 37.0 38.0 76-77 37.290201674775155 38.0 38.0 38.0 37.0 38.0 78-79 37.274334598736914 38.0 38.0 38.0 37.0 38.0 80-81 37.268390717709465 38.0 38.0 38.0 37.0 38.0 82-83 37.26960175312334 38.0 38.0 38.0 37.0 38.0 84-85 37.2553137966232 38.0 38.0 38.0 37.0 38.0 86-87 37.242873737808395 38.0 38.0 38.0 37.0 38.0 88-89 37.224259751333705 38.0 38.0 38.0 37.0 38.0 90-91 37.21497863777344 38.0 38.0 38.0 36.5 38.0 92-93 37.211908694447864 38.0 38.0 38.0 36.5 38.0 94-95 37.173772161248976 38.0 38.0 38.0 36.0 38.0 96-97 37.1858350906823 38.0 38.0 38.0 36.0 38.0 98-99 37.177088329191236 38.0 38.0 38.0 36.0 38.0 100 35.69858105818446 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 3.0 19 24.0 20 87.0 21 255.0 22 685.0 23 1519.0 24 2994.0 25 5797.0 26 9729.0 27 15525.0 28 23649.0 29 34801.0 30 48569.0 31 64419.0 32 83382.0 33 110671.0 34 158809.0 35 282968.0 36 857312.0 37 7076690.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.863733669055584 20.890416616018587 14.390039703158767 23.855810011767066 2 14.355405769804547 20.99511373543767 42.25629426543179 22.393186229325995 3 17.77551122473496 26.253960091324895 30.60558623933699 25.36494244460315 4 12.31825503415342 18.274389599961996 39.5876070914984 29.819748274386182 5 13.171560635424107 37.69055488525292 35.97214579253127 13.165738686791695 6 29.538001639354533 38.265246196532296 19.127804147828993 13.06894801628418 7 26.117571977141207 32.85356357238886 23.585323627281312 17.443540823188624 8 23.831435476769176 37.09774051494181 21.602869028245415 17.467954980043597 9 25.22692288062528 17.23912128133106 21.800682443307444 35.73327339473622 10-11 23.70176389750112 27.086341126815082 29.413175670556857 19.798719305126937 12-13 24.56437428990631 24.612375569484744 29.450303039762055 21.37294710084689 14-15 21.7852797320723 26.091752910337622 27.088211000125828 25.034756357464243 16-17 21.380898897012962 29.17462178557469 27.82479869025487 21.619680627157482 18-19 21.429133717882802 28.352852638521032 29.42038696994529 20.79762667365088 20-21 22.151646552031043 27.513905087400765 29.336409270532947 20.998039090035245 22-23 21.906808355116134 27.44120011374449 29.13721659575864 21.514774935380736 24-25 21.679060369047633 27.53412272417142 29.250913071513153 21.53590383526779 26-27 21.65056088831953 27.69156802555154 29.178823220692678 21.479047865436254 28-29 21.562501834290888 27.742581871205225 29.192946771856043 21.501969522647844 30-31 21.865098080460275 27.519650056770413 29.15375498897758 21.461496873791734 32-33 21.65986424412651 27.67215089126364 29.068670409827675 21.599314454782174 34-35 21.80122110082388 27.71099162598431 29.0899315894819 21.39785568370991 36-37 21.7555934554477 27.62202414440208 29.073434263979927 21.548948136170303 38-39 21.624302306776126 27.727605814758526 29.151349099950743 21.496742778514605 40-41 21.881858745200784 27.59832775598933 29.068537530588678 21.4512759682212 42-43 21.81170512029936 27.652809441146776 28.873478001913984 21.66200743663988 44-45 21.841642719227654 27.70941163063729 28.799671611632462 21.649274038502593 46-47 21.87026915026599 27.755703736115244 28.602769069374567 21.771258044244195 48-49 21.820515369211332 27.79482871404131 28.66857258679017 21.71608332995719 50-51 21.79651790089043 27.90769553960742 28.5506416376548 21.74514492184735 52-53 21.954752571056062 27.85831204639697 28.442804307040763 21.744131075506203 54-55 21.912326520515858 27.79618274333493 28.455507391574308 21.835983344574903 56-57 21.905399960148987 27.88702213309449 28.41778533916763 21.789792567588893 58-59 21.87201641545958 27.919431355315115 28.471914384364645 21.736637844860656 60-61 21.964602832254602 27.900309209263348 28.463849231788657 21.671238726693396 62-63 21.909773126433286 27.970997733519003 28.40661024010855 21.712618899939162 64-65 21.886070043528946 27.92637897111122 28.359255063418132 21.828295921941702 66-67 21.969783555440515 27.949302140224948 28.240142630694958 21.840771673639576 68-69 21.944147886814804 27.915921940484367 28.30111004591717 21.838820126783656 70-71 21.926327297322963 27.759996999677778 28.329082985941096 21.98459271705816 72-73 21.99841396765379 27.774009216955154 28.255275242008654 21.9723015733824 74-75 21.900343662994207 27.86679228611965 28.220038684162663 22.012825366723476 76-77 22.030648519080007 27.771066140111955 28.140974120835445 22.057311219972597 78-79 21.983067251292017 27.820861694019143 28.10623189909617 22.089839155592667 80-81 21.99286782295113 27.827154593246135 28.083613992945995 22.096363590856743 82-83 22.0384421848228 27.82596251546347 28.145540939741547 21.990054359972184 84-85 22.174691759396495 27.798031609862132 28.048007988285935 21.979268642455434 86-87 21.993299977866034 27.829829400550587 28.11129129206679 22.06557932951658 88-89 22.085045566870313 27.802992729669736 28.05033547887103 22.061626224588927 90-91 22.079588005945954 27.81759207236656 28.090815958677307 22.012003963010176 92-93 22.110218437454073 27.794794520946624 28.103067670354587 21.99191937124472 94-95 22.057695232598128 27.900419776599655 28.02660428708142 22.015280703720798 96-97 22.10751576511603 27.993325865021195 28.1121537258531 21.787004644009667 98-99 23.226298845045676 29.8723821939417 28.3568759127547 18.54444304825793 100 22.00789315883225 30.79235145235345 22.347561120539257 24.852194268275042 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1406.0 1 1289.0 2 1700.0 3 2509.5 4 3224.5 5 4254.5 6 5159.5 7 6509.0 8 8400.5 9 9815.0 10 10388.0 11 10852.5 12 12116.0 13 14588.5 14 18890.0 15 23186.0 16 26038.0 17 27456.0 18 27025.0 19 25445.0 20 24209.0 21 24250.5 22 26808.0 23 32770.0 24 42041.5 25 55146.5 26 72284.5 27 92144.5 28 113213.5 29 135495.5 30 157782.5 31 180323.5 32 203160.0 33 225157.5 34 246935.0 35 266795.0 36 286912.0 37 306607.5 38 322348.0 39 334885.0 40 346987.5 41 357169.5 42 363700.0 43 369878.5 44 373754.5 45 375469.5 46 374993.5 47 372492.0 48 367532.5 49 357203.0 50 344827.0 51 329144.5 52 309046.0 53 288591.0 54 268407.5 55 246802.0 56 225219.5 57 201620.5 58 176749.0 59 152475.5 60 126916.5 61 102616.0 62 80662.5 63 61744.0 64 46474.5 65 34447.5 66 25264.5 67 18880.0 68 14131.5 69 10372.0 70 7596.0 71 5617.0 72 4013.0 73 2742.0 74 1891.5 75 1237.5 76 770.5 77 469.0 78 285.0 79 181.0 80 115.5 81 70.0 82 46.5 83 39.0 84 31.5 85 25.5 86 21.0 87 16.0 88 10.0 89 4.0 90 1.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.2784516235164006E-4 3 0.0 4 0.0 5 0.008669508427479903 6 5.240438734087721E-4 7 0.0 8 6.835354870549201E-5 9 2.1645290423405803E-4 10-11 0.0 12-13 0.0 14-15 5.6961290587910014E-6 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.0823602060585968E-4 26-27 1.1394320102343782E-5 28-29 6.32559225209548E-4 30-31 2.7377025964086247E-4 32-33 0.001542864372278773 34-35 3.036130004337083E-4 36-37 0.0012993860860702996 38-39 7.109388930681435E-4 40-41 6.510815190685209E-4 42-43 1.2280352733834584E-4 44-45 4.711452120780667E-5 46-47 4.808935072608389E-4 48-49 0.00151998938640482 50-51 0.0016460789224297064 52-53 0.0017124392987330316 54-55 0.001321200876176381 56-57 0.002977640141893492 58-59 3.7908839061068906E-4 60-61 1.879615042308568E-5 62-63 0.002077790716077414 64-65 0.0024069318107940193 66-67 0.0031543666070399296 68-69 7.002781595626581E-4 70-71 0.004902118631532678 72-73 0.0011163534953820618 74-75 0.004071781170351196 76-77 2.959524135423789E-4 78-79 9.642857094351826E-4 80-81 1.3714404520212872E-5 82-83 3.4617118400445424E-5 84-85 9.294794181458843E-4 86-87 0.0 88-89 0.0 90-91 0.00288763118108796 92-93 7.203101786594795E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 48.0 20-21 194.0 22-23 412.0 24-25 680.0 26-27 1751.0 28-29 4808.0 30-31 15517.0 32-33 20145.0 34-35 27806.0 36-37 43715.0 38-39 49517.0 40-41 49738.0 42-43 57327.0 44-45 67264.0 46-47 67391.0 48-49 63993.0 50-51 59400.0 52-53 58223.0 54-55 63489.0 56-57 64589.0 58-59 65243.0 60-61 63699.0 62-63 64012.0 64-65 68182.0 66-67 71534.0 68-69 71777.0 70-71 71509.0 72-73 66157.0 74-75 68621.0 76-77 70334.0 78-79 71344.0 80-81 70674.0 82-83 67480.0 84-85 67534.0 86-87 70416.0 88-89 71859.0 90-91 71750.0 92-93 71532.0 94-95 84599.0 96-97 265802.0 98-99 577662.0 100-101 5890164.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.49452991796484 #Duplication Level Percentage of deduplicated Percentage of total 1 89.75021153711032 76.7315214540315 2 7.167028959545522 12.2548354360957 3 1.8128971755516872 4.6497837544019305 4 0.6148549409815582 2.102669365878253 5 0.2723108750687469 1.164054512777608 6 0.12974343614094885 0.6655412449687147 7 0.08208204456442483 0.49122960703186597 8 0.0440262301802311 0.30112014826551786 9 0.02853337353486764 0.21955026216034867 >10 0.0965191495981838 1.242532523448959 >50 0.0014215405150206117 0.08229117561045794 >100 3.0916471125339067E-4 0.05242425646393283 >500 4.104841503526912E-5 0.023653456607810198 >1k 2.0524082157581216E-5 0.018792802257403624 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.2784516235164006E-5 0.0 0.0 0.0 3 0.0 2.2784516235164006E-5 0.0 0.0 0.0 4 0.0 6.835354870549201E-5 0.0 0.0 0.0 5 0.0 7.974580682307401E-5 0.0 1.1392258117582003E-5 0.0 6 2.2784516235164006E-5 7.974580682307401E-5 0.0 3.417677435274601E-5 2.2784516235164006E-5 7 2.2784516235164006E-5 7.974580682307401E-5 0.0 3.417677435274601E-5 3.417677435274601E-5 8 2.2784516235164006E-5 1.1392258117582002E-4 0.0 3.417677435274601E-5 4.556903247032801E-5 9 2.2784516235164006E-5 2.1645290423405805E-4 0.0 7.974580682307401E-5 5.696129058791001E-5 10-11 6.835354870549201E-5 2.2784516235164006E-4 0.0 1.1392258117582002E-4 5.696129058791001E-5 12-13 6.835354870549201E-5 2.3923742046922205E-4 0.0 1.31010968352193E-4 5.696129058791001E-5 14-15 7.974580682307403E-5 3.0759096917471406E-4 0.0 1.5949161364614802E-4 8.544193588186502E-5 16-17 1.1392258117582003E-4 3.1898322729229605E-4 0.0 1.7088387176373003E-4 9.113806494065602E-5 18-19 1.3670709741098403E-4 3.6455225976262404E-4 0.0 1.8797225894010304E-4 9.683419399944703E-5 20-21 1.3670709741098403E-4 4.101212922329521E-4 0.0 2.0506064611647604E-4 1.1392258117582002E-4 22-23 1.4809935552856604E-4 4.3860193752690707E-4 0.0 2.2214903329284905E-4 1.1392258117582002E-4 24-25 1.8797225894010304E-4 5.012593571736082E-4 0.0 2.8480645293955004E-4 1.1392258117582002E-4 26-27 1.9366838799889403E-4 5.240438734087721E-4 0.0 3.4176774352746007E-4 1.1392258117582002E-4 28-29 1.9366838799889403E-4 5.240438734087721E-4 0.0 5.753090349378911E-4 1.1392258117582002E-4 30-31 2.1645290423405803E-4 5.696129058791001E-4 0.0 0.0014069438775213773 1.2531483929340202E-4 32-33 2.2784516235164004E-4 5.696129058791001E-4 0.0 0.003315147112216363 2.0506064611647604E-4 34-35 2.4493354952801307E-4 6.550548417609652E-4 0.0 0.006009416157024506 2.2214903329284905E-4 36-37 2.6202193670438607E-4 7.291045195252482E-4 0.0 0.0101903748861771 2.3923742046922205E-4 38-39 2.6202193670438607E-4 7.404967776428301E-4 0.0 0.0185465962154235 2.3923742046922205E-4 40-41 2.7341419482196806E-4 7.974580682307402E-4 0.0 0.027096485932668793 2.3923742046922205E-4 42-43 2.7341419482196806E-4 8.316348425834862E-4 0.0 0.03340779692980922 2.3923742046922205E-4 44-45 2.7341419482196806E-4 9.113806494065601E-4 0.0 0.040846941480590274 2.3923742046922205E-4 46-47 2.7341419482196806E-4 9.455574237593062E-4 0.0 0.049624676360187206 2.3923742046922205E-4 48-49 2.7341419482196806E-4 9.512535528180972E-4 0.0 0.05751381510661274 2.3923742046922205E-4 50-51 2.7341419482196806E-4 0.0010366954886999622 0.0 0.06585864417774157 2.6202193670438607E-4 52-53 2.7341419482196806E-4 0.0010480877468175443 0.0 0.08298120812846731 2.6202193670438607E-4 54-55 2.7341419482196806E-4 0.0010480877468175443 0.0 0.10489421661763629 2.6771806576317704E-4 56-57 2.7341419482196806E-4 0.0010480877468175443 0.0 0.13113058706242764 2.848064529395501E-4 58-59 2.7341419482196806E-4 0.0010651761339939172 0.0 0.15315751813277245 2.961987110571321E-4 60-61 2.7341419482196806E-4 0.0010993529083466631 0.0 0.16250486591824848 2.961987110571321E-4 62-63 2.7341419482196806E-4 0.0011221374245818272 0.0 0.17467749371688485 2.961987110571321E-4 64-65 2.7341419482196806E-4 0.0012417561348164383 0.0 0.18133626858661153 2.961987110571321E-4 66-67 2.7341419482196806E-4 0.0012531483929340203 0.0 0.1872944195821069 2.961987110571321E-4 68-69 2.961987110571321E-4 0.0012702367801103933 0.0 0.19365129961171768 3.0189484011592304E-4 70-71 2.961987110571321E-4 0.0012816290382279753 0.0 0.19878351189368837 3.0759096917471406E-4 72-73 2.961987110571321E-4 0.0012987174254043483 0.0 0.20245181900754977 3.0759096917471406E-4 74-75 2.961987110571321E-4 0.0013442864578746762 0.0 0.20531127579506286 3.132870982335051E-4 76-77 2.961987110571321E-4 0.0013955516194037953 0.0 0.20854098097139734 3.303754854098781E-4 78-79 2.961987110571321E-4 0.0014126400065801682 0.0 0.2106599409812676 3.4176774352746007E-4 80-81 2.961987110571321E-4 0.0014126400065801682 0.0 0.21126942679055824 3.4176774352746007E-4 82-83 3.0189484011592304E-4 0.0014297283937565412 0.0 0.2117877745349082 3.5885613070383307E-4 84-85 3.0759096917471406E-4 0.0014411206518741234 0.0 0.212038404213495 3.759445178802061E-4 86-87 3.0759096917471406E-4 0.0014809935552856602 0.0 0.21215802292372962 3.816406469389971E-4 88 3.1898322729229605E-4 0.0015265625877559884 0.0 0.2121694151818472 3.8733677599778806E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9795 0.0 45.759914 1 GTATCAA 17285 0.0 36.363094 1 TCAACGC 20045 0.0 30.820446 4 ATCAACG 20230 0.0 30.581041 3 CAACGCA 20665 0.0 29.874983 5 AACGCAG 21360 0.0 28.981342 6 TATCAAC 21695 0.0 28.931892 2 ACGCAGA 24565 0.0 25.112474 7 CGCAGAG 24960 0.0 24.697865 8 GCAGAGT 30315 0.0 20.377586 9 GTGGTAT 4880 0.0 19.882809 1 GTACATG 21120 0.0 19.677528 1 GAGTACT 17995 0.0 19.108658 12-13 TACATGG 21365 0.0 18.889223 2 TATACCG 595 0.0 18.760334 5 AGAGTAC 26835 0.0 18.524925 10-11 TGGTATC 4890 0.0 18.437395 2 ACATGGG 21655 0.0 18.239536 3 CAGAGTA 29305 0.0 18.003614 10-11 GTACTTT 20440 0.0 16.686539 14-15 >>END_MODULE