##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140051_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6323287 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.14967389587093 33.0 32.0 33.0 25.0 34.0 2 31.927109112713055 33.0 32.0 33.0 29.0 34.0 3 32.649246981830814 33.0 33.0 34.0 31.0 34.0 4 32.682771792581924 33.0 33.0 34.0 31.0 34.0 5 33.20554341436661 34.0 33.0 34.0 33.0 34.0 6 37.271420069973104 38.0 38.0 38.0 36.0 38.0 7 37.36953502189605 38.0 38.0 38.0 37.0 38.0 8 37.48423913069263 38.0 38.0 38.0 37.0 38.0 9 37.503231468064 38.0 38.0 38.0 37.0 38.0 10-11 37.522660998939315 38.0 38.0 38.0 37.0 38.0 12-13 37.544026390072126 38.0 38.0 38.0 37.5 38.0 14-15 37.51478692964592 38.0 38.0 38.0 37.0 38.0 16-17 37.53962330034996 38.0 38.0 38.0 37.5 38.0 18-19 37.45427987057997 38.0 38.0 38.0 37.0 38.0 20-21 37.53213446032275 38.0 38.0 38.0 37.0 38.0 22-23 37.542463261480236 38.0 38.0 38.0 38.0 38.0 24-25 37.54283797710525 38.0 38.0 38.0 38.0 38.0 26-27 37.520724656020356 38.0 38.0 38.0 37.5 38.0 28-29 37.45088647838929 38.0 38.0 38.0 37.0 38.0 30-31 37.48999531425445 38.0 38.0 38.0 37.0 38.0 32-33 37.47895317329239 38.0 38.0 38.0 37.0 38.0 34-35 37.452819895669684 38.0 38.0 38.0 37.0 38.0 36-37 37.43285793285239 38.0 38.0 38.0 37.0 38.0 38-39 37.40685097493964 38.0 38.0 38.0 37.0 38.0 40-41 37.412498357471065 38.0 38.0 38.0 37.0 38.0 42-43 37.35395578360006 38.0 38.0 38.0 37.0 38.0 44-45 37.364119310023014 38.0 38.0 38.0 37.0 38.0 46-47 37.348836846503474 38.0 38.0 38.0 37.0 38.0 48-49 37.318480579958134 38.0 38.0 38.0 37.0 38.0 50-51 37.29049544061421 38.0 38.0 38.0 37.0 38.0 52-53 37.27379214612016 38.0 38.0 38.0 37.0 38.0 54-55 37.26376403834297 38.0 38.0 38.0 37.0 38.0 56-57 37.26915921422776 38.0 38.0 38.0 37.0 38.0 58-59 37.263723125684734 38.0 38.0 38.0 37.0 38.0 60-61 37.26120528997838 38.0 38.0 38.0 37.0 38.0 62-63 37.26368743446303 38.0 38.0 38.0 37.0 38.0 64-65 37.26385247117711 38.0 38.0 38.0 37.0 38.0 66-67 37.2629615681426 38.0 38.0 38.0 37.0 38.0 68-69 37.26078799427877 38.0 38.0 38.0 37.0 38.0 70-71 37.26480216939563 38.0 38.0 38.0 37.0 38.0 72-73 37.232527682333235 38.0 38.0 38.0 37.0 38.0 74-75 37.23220641603761 38.0 38.0 38.0 37.0 38.0 76-77 37.234312287381854 38.0 38.0 38.0 37.0 38.0 78-79 37.22172811624561 38.0 38.0 38.0 37.0 38.0 80-81 37.2177801322738 38.0 38.0 38.0 37.0 38.0 82-83 37.222067159706455 38.0 38.0 38.0 37.0 38.0 84-85 37.20761680572764 38.0 38.0 38.0 37.0 38.0 86-87 37.19392938704891 38.0 38.0 38.0 36.5 38.0 88-89 37.17938010699966 38.0 38.0 38.0 36.0 38.0 90-91 37.16764337748269 38.0 38.0 38.0 36.0 38.0 92-93 37.16463951612819 38.0 38.0 38.0 36.0 38.0 94-95 37.128801564041694 38.0 38.0 38.0 36.0 38.0 96-97 37.144261923691225 38.0 38.0 38.0 36.0 38.0 98-99 37.13729696662196 38.0 38.0 38.0 36.0 38.0 100 35.657448226742694 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 29.0 20 71.0 21 172.0 22 461.0 23 1043.0 24 2157.0 25 4047.0 26 7102.0 27 11635.0 28 18513.0 29 27241.0 30 38300.0 31 50967.0 32 66651.0 33 87884.0 34 126128.0 35 223135.0 36 659066.0 37 4998681.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.511746501463556 20.88796538888714 14.413611148758548 24.18667696089075 2 14.288883986358314 20.65225797115889 42.496068091405306 22.562789951077487 3 17.695796505836284 26.11842543284845 30.73407865244769 25.451699408867572 4 12.235772312722798 18.420277301979176 38.974681996879156 30.369268388418874 5 13.14563443077855 37.59025988044693 35.994031045207635 13.270074643566884 6 29.602583098367475 38.12367957725597 18.87373267487541 13.400004649501152 7 26.095288731952227 32.7266024774773 23.054243781754646 18.123865008815827 8 23.85216144289764 37.04748930775756 21.511934636413148 17.58841461293165 9 25.033099931111657 17.129190628402114 21.34580239736491 36.491907043121316 10-11 23.78370616421491 26.92450935723778 29.238780400130505 20.053004078416812 12-13 24.704184706466748 24.291400975473675 29.20114174795482 21.803272570104756 14-15 21.896872773359235 25.813483225850987 26.647780390782543 25.64186361000723 16-17 21.602071833842114 29.043264998093555 27.392319848838113 21.962343319226218 18-19 21.65656089941829 28.007047600401503 29.08639130249821 21.250000197682 20-21 22.29126241843836 27.183905132971653 28.961934435658733 21.56289801293125 22-23 22.002169050737837 27.361171461365313 28.846904002305852 21.789755485590995 24-25 21.903184682549895 27.463811432036017 29.02943569091263 21.603568194501456 26-27 21.990493853034334 27.59001775482524 28.955011882683706 21.464476509456716 28-29 21.72263356007413 27.39524333222107 29.159252222118326 21.722870885586477 30-31 22.20312837226816 27.417681227027014 28.87040783671774 21.508782563987094 32-33 21.96507104023809 27.267302265012106 28.949443290308423 21.818183404441385 34-35 21.769100219449363 27.58197233494314 29.231356423480985 21.417571022126513 36-37 22.039251807541966 27.398212557569266 28.90271387175724 21.65982176313153 38-39 21.66708200952819 27.337057307051595 29.16128645315157 21.83457423026865 40-41 21.951037226977373 27.228738973378896 29.096074053261557 21.72414974638217 42-43 22.09432464017505 27.155289067201217 28.974525037226627 21.77586125539711 44-45 21.898436226527707 27.44347716496973 28.827782488881294 21.83030411962127 46-47 22.13969749005172 27.237354117610767 28.463969234882214 22.158979157455295 48-49 21.97613563714788 27.296077396284574 28.56538767113476 22.16239929543278 50-51 21.839275477011643 27.42618027808027 28.66005062229148 22.07449362261661 52-53 22.03470352310613 27.39734169503113 28.79057220703407 21.777382574828668 54-55 21.973776527054742 27.369434428999114 28.549853917532257 22.10693512641389 56-57 22.196166641812106 27.66526775869759 28.167873051319948 21.970692548170355 58-59 21.827484615908393 28.019542799997527 28.541444711841024 21.61152787225306 60-61 22.113131123053805 28.285475190864663 27.98740740721488 21.613986278866655 62-63 21.83129277124951 28.60763837648043 27.9239445647058 21.63712428756426 64-65 21.83416404813307 28.50281268055469 27.95361390209588 21.709409369216363 66-67 21.942116749837975 28.48067222469301 27.822856307919068 21.754354717549944 68-69 21.893246741371424 28.27374806442228 27.986744969743505 21.846260224462792 70-71 21.937801710627298 27.954407849025465 28.05626895253952 22.051521487807722 72-73 22.11225877786671 27.697490966124438 28.08732513418395 22.102925121824903 74-75 22.03160667154221 27.77553959611409 28.06305263937289 22.12980109297081 76-77 22.1381709900659 27.717964273020907 27.989986988101712 22.15387774881149 78-79 22.122511817917207 27.736803077793105 28.002197829813113 22.138487274476574 80-81 22.134885314163018 27.69485301269896 27.976298781676356 22.193962891461663 82-83 22.19432646010671 27.68235622026304 28.0334443731384 22.08987294649185 84-85 22.33979046898925 27.64522000037486 27.929666616717753 22.08532291391814 86-87 22.134626155097443 27.651463098926076 28.005527334488228 22.208383411488253 88-89 22.21243333741405 27.64678189202341 27.92921244155163 22.211572329010906 90-91 22.260392064359884 27.70129705277067 27.93381102829688 22.104499854572566 92-93 22.289326508963295 27.661246937965995 27.94119279787396 22.108233755196753 94-95 22.235217759948853 27.77605504760225 27.843702089930595 22.145025102518307 96-97 22.28839204939512 27.85105620395431 27.937166677689223 21.923385068961345 98-99 23.39803766153978 29.72422435832216 28.19829864252585 18.67943933761221 100 22.230360808751637 30.678370539906823 22.134894561107107 24.956374090234434 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 822.0 1 825.5 2 1225.5 3 1877.0 4 2473.5 5 3164.0 6 3774.0 7 4959.5 8 6582.0 9 7703.0 10 8136.0 11 8438.5 12 9341.5 13 11092.5 14 14451.0 15 18085.0 16 20211.0 17 21005.0 18 20664.0 19 19653.0 20 18407.0 21 17938.5 22 19516.5 23 23379.0 24 29646.5 25 38219.5 26 49870.0 27 63563.5 28 77002.0 29 91693.0 30 106385.0 31 121016.5 32 136913.5 33 151793.0 34 166669.0 35 181095.5 36 196482.5 37 210966.0 38 221419.0 39 230171.0 40 239692.5 41 247693.5 42 257048.0 43 279892.5 44 287615.0 45 280732.0 46 276380.0 47 267345.0 48 260904.0 49 253762.0 50 246850.5 51 238968.0 52 227386.5 53 214081.0 54 200123.5 55 184119.5 56 167913.5 57 151636.0 58 133953.5 59 115643.0 60 96572.0 61 78137.0 62 61940.5 63 48102.5 64 36149.5 65 26723.0 66 19641.0 67 14758.0 68 11176.5 69 8071.5 70 5685.5 71 4019.0 72 2855.0 73 1955.0 74 1335.0 75 862.5 76 528.5 77 311.5 78 196.0 79 125.0 80 77.5 81 53.5 82 44.0 83 28.5 84 15.0 85 8.0 86 4.5 87 3.0 88 2.0 89 3.0 90 3.0 91 1.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 3.4792031422897616E-4 3 0.0 4 0.0 5 0.00904592816995338 6 4.428076726550606E-4 7 0.0 8 1.7396015711448808E-4 9 1.7396015711448808E-4 10-11 0.0 12-13 0.0 14-15 7.907279868840368E-6 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.6606671769923262E-4 26-27 7.908607499052351E-6 28-29 6.407747773960289E-4 30-31 3.087731232472672E-4 32-33 0.001554510209126831 34-35 3.418450362391513E-4 36-37 0.001499764066370942 38-39 7.456872217353873E-4 40-41 7.336582068619455E-4 42-43 1.1350804058528638E-4 44-45 7.346214348821765E-5 46-47 5.34685017056452E-4 48-49 0.0016413547111771116 50-51 0.0017867943539970257 52-53 0.0017402152822847763 54-55 0.0013037993984405035 56-57 0.0031394249324255847 58-59 4.2986547102165097E-4 60-61 2.5991254462698392E-5 62-63 0.0020782127510053138 64-65 0.002517743267479675 66-67 0.003155042054933104 68-69 7.994201060444243E-4 70-71 0.005011990642831382 72-73 0.0011862338390582297 74-75 0.0043235965197460325 76-77 3.18252740039087E-4 78-79 0.0010580911902666192 80-81 0.0 82-83 5.7746311598712414E-5 84-85 9.41995967091905E-4 86-87 0.0 88-89 1.97932927062805E-5 90-91 0.003098357870328726 92-93 6.459626225840241E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 49.0 20-21 150.0 22-23 255.0 24-25 399.0 26-27 1294.0 28-29 3356.0 30-31 10518.0 32-33 13667.0 34-35 19028.0 36-37 29888.0 38-39 34556.0 40-41 34062.0 42-43 39118.0 44-45 46637.0 46-47 47389.0 48-49 44175.0 50-51 41162.0 52-53 40895.0 54-55 44431.0 56-57 45209.0 58-59 44739.0 60-61 45151.0 62-63 45655.0 64-65 50284.0 66-67 57695.0 68-69 61670.0 70-71 70722.0 72-73 50728.0 74-75 46640.0 76-77 48817.0 78-79 49420.0 80-81 48663.0 82-83 46558.0 84-85 46984.0 86-87 48836.0 88-89 49368.0 90-91 49111.0 92-93 49044.0 94-95 58874.0 96-97 190047.0 98-99 419421.0 100-101 4248622.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.89028233919586 #Duplication Level Percentage of deduplicated Percentage of total 1 89.88070771005484 77.1987936206335 2 7.208035634470524 12.382004315113162 3 1.7067953052133318 4.3979139197996115 4 0.5765374284740749 1.9807585004300892 5 0.27313630147906953 1.1729877025560502 6 0.12263045515770293 0.6319658650127522 7 0.0723288946199918 0.43486444261351287 8 0.043007103172948896 0.2955113787292406 9 0.02724600798307063 0.21061505864537286 >10 0.08776573390883524 1.108035937952389 >50 0.0013506694647430937 0.0802460452245133 >100 4.0315884002947104E-4 0.06588067299220528 >500 2.7798581730876473E-5 0.015853850142401437 >1k 2.779857911785549E-5 0.024568690155238538 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.162911947536147E-5 0.0 0.0 0.0 3 0.0 3.162911947536147E-5 0.0 0.0 0.0 4 0.0 4.744367921304221E-5 0.0 0.0 0.0 5 0.0 4.744367921304221E-5 0.0 0.0 0.0 6 0.0 4.744367921304221E-5 0.0 0.0 0.0 7 0.0 4.744367921304221E-5 0.0 0.0 0.0 8 0.0 4.744367921304221E-5 0.0 0.0 0.0 9 0.0 1.1070191816376515E-4 0.0 0.0 1.5814559737680733E-5 10-11 0.0 1.1070191816376515E-4 0.0 0.0 1.5814559737680733E-5 12-13 0.0 1.1070191816376515E-4 0.0 0.0 1.5814559737680733E-5 14-15 0.0 1.660528772456477E-4 0.0 0.0 2.37218396065211E-5 16-17 0.0 1.7396015711448808E-4 0.0 0.0 3.162911947536147E-5 18-19 0.0 1.8186743698332845E-4 0.0 0.0 4.744367921304221E-5 20-21 0.0 1.8977471685216883E-4 0.0 0.0 4.744367921304221E-5 22-23 0.0 2.5303295580289173E-4 0.0 0.0 8.698007855724404E-5 24-25 0.0 2.8466207527825323E-4 0.0 0.0 1.3442375777028624E-4 26-27 0.0 3.00476635015934E-4 0.0 7.116551881956331E-5 1.7396015711448808E-4 28-29 0.0 3.00476635015934E-4 0.0 2.7675479540941285E-4 1.7396015711448808E-4 30-31 0.0 3.321057544912954E-4 0.0 9.251517446543229E-4 1.7396015711448808E-4 32-33 0.0 3.321057544912954E-4 0.0 0.0023168330015702274 1.7396015711448808E-4 34-35 0.0 3.87456713573178E-4 0.0 0.00408806369219047 1.7396015711448808E-4 36-37 0.0 4.428076726550606E-4 0.0 0.007156088281300533 1.8977471685216883E-4 38-39 0.0 4.428076726550606E-4 0.0 0.011441833970212012 2.0558927658984955E-4 40-41 0.0 4.902513518681028E-4 0.0 0.01526105014686191 2.0558927658984955E-4 42-43 0.0 5.060659116057835E-4 0.0 0.019459815757216142 2.0558927658984955E-4 44-45 0.0 5.456023109499853E-4 0.0 0.024196276398651524 2.214038363275303E-4 46-47 0.0 5.851387102941872E-4 0.0 0.02939135927247965 2.688475155405725E-4 48-49 0.0 5.930459901630276E-4 0.0 0.03479993870276646 3.00476635015934E-4 50-51 1.5814559737680733E-5 6.800260687202716E-4 0.0 0.04039829284990544 3.00476635015934E-4 52-53 1.5814559737680733E-5 6.800260687202716E-4 0.0 0.045031958853045895 3.3210575449129547E-4 54-55 1.5814559737680733E-5 6.800260687202716E-4 0.0 0.05011633980871025 3.716421538354973E-4 56-57 1.5814559737680733E-5 6.958406284579523E-4 0.0 0.055406310040964454 3.87456713573178E-4 58-59 1.5814559737680733E-5 7.116551881956331E-4 0.0 0.060791167631644744 3.9536399344201835E-4 60-61 1.5814559737680733E-5 7.432843076709946E-4 0.0 0.06589927042691562 3.9536399344201835E-4 62-63 1.5814559737680733E-5 7.828207070151963E-4 0.0 0.07073852570664593 4.111785531796991E-4 64-65 1.5814559737680733E-5 9.172444647854826E-4 0.0 0.07522986067214726 4.111785531796991E-4 66-67 1.5814559737680733E-5 9.172444647854826E-4 0.0 0.0798635266752877 4.111785531796991E-4 68-69 1.5814559737680733E-5 9.251517446543229E-4 0.0 0.08467906011541149 4.1908583304853947E-4 70-71 1.5814559737680733E-5 9.409663043920037E-4 0.0 0.08905969316274906 4.428076726550606E-4 72-73 1.5814559737680733E-5 9.488735842608441E-4 0.0 0.09270494918228447 4.586222323927413E-4 74-75 1.5814559737680733E-5 9.646881439985249E-4 0.0 0.09539342433769019 4.586222323927413E-4 76-77 1.5814559737680733E-5 0.0010200391030804074 0.0 0.0981372504521778 4.586222323927413E-4 78-79 1.5814559737680733E-5 0.0010437609426869284 0.0 0.09975824282529008 4.586222323927413E-4 80-81 1.5814559737680733E-5 0.0010437609426869284 0.0 0.10032756697584658 4.744367921304221E-4 82-83 1.5814559737680733E-5 0.0010437609426869284 0.0 0.10084944744719004 5.218804713434642E-4 84-85 1.5814559737680733E-5 0.0010674827822934494 0.0 0.10107085128351757 5.218804713434642E-4 86-87 1.5814559737680733E-5 0.0011070191816376514 0.0 0.10114992408220598 5.297877512123046E-4 88 1.5814559737680733E-5 0.0011544628608506937 0.0 0.10114992408220598 5.37695031081145E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7250 0.0 49.595993 1 CTTATAC 6255 0.0 41.894947 1 GTATCAA 13050 0.0 37.330315 1 TATACAC 8605 0.0 33.898308 3 ATCAACG 15530 0.0 31.147707 3 TCAACGC 15565 0.0 30.967266 4 TTATACA 8940 0.0 30.802052 2 CAACGCA 15970 0.0 30.208834 5 TATCAAC 16550 0.0 29.409729 2 AACGCAG 16675 0.0 28.928894 6 ACGCAGA 18940 0.0 25.491615 7 CGCAGAG 19315 0.0 25.018936 8 ACACATC 11050 0.0 24.490417 6 ACATCTC 11370 0.0 23.800776 8 TACACAT 12045 0.0 23.575113 5 CACATCT 12520 0.0 21.511677 7 GCAGAGT 23055 0.0 20.86719 9 ATACACA 15655 0.0 20.059654 4 GTGGTAT 3735 0.0 20.013256 1 CATCTCC 13440 0.0 19.87935 9 >>END_MODULE