##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140050_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6250578 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.43418912618961 33.0 32.0 33.0 27.0 34.0 2 31.95109380284511 33.0 32.0 33.0 30.0 34.0 3 32.674989896934335 33.0 33.0 34.0 31.0 34.0 4 32.66464525360695 33.0 33.0 34.0 31.0 34.0 5 33.19980424210369 33.0 33.0 34.0 33.0 34.0 6 37.28751933021234 38.0 38.0 38.0 36.0 38.0 7 37.385658414309844 38.0 38.0 38.0 37.0 38.0 8 37.51834870311193 38.0 38.0 38.0 37.0 38.0 9 37.534548005000495 38.0 38.0 38.0 37.0 38.0 10-11 37.55090721210102 38.0 38.0 38.0 37.5 38.0 12-13 37.570804731978384 38.0 38.0 38.0 38.0 38.0 14-15 37.54218177902908 38.0 38.0 38.0 38.0 38.0 16-17 37.56951277145889 38.0 38.0 38.0 38.0 38.0 18-19 37.4851301751614 38.0 38.0 38.0 37.5 38.0 20-21 37.56220529030713 38.0 38.0 38.0 38.0 38.0 22-23 37.570071794408534 38.0 38.0 38.0 38.0 38.0 24-25 37.571517708163526 38.0 38.0 38.0 38.0 38.0 26-27 37.546260942458886 38.0 38.0 38.0 38.0 38.0 28-29 37.479288694397894 38.0 38.0 38.0 37.0 38.0 30-31 37.51599325580865 38.0 38.0 38.0 37.5 38.0 32-33 37.50585682122609 38.0 38.0 38.0 38.0 38.0 34-35 37.48474210763841 38.0 38.0 38.0 37.0 38.0 36-37 37.46245932744466 38.0 38.0 38.0 37.0 38.0 38-39 37.4434846137116 38.0 38.0 38.0 37.0 38.0 40-41 37.432922314830776 38.0 38.0 38.0 37.0 38.0 42-43 37.36845460432083 38.0 38.0 38.0 37.0 38.0 44-45 37.377641187189965 38.0 38.0 38.0 37.0 38.0 46-47 37.35613573350566 38.0 38.0 38.0 37.0 38.0 48-49 37.32405059568407 38.0 38.0 38.0 37.0 38.0 50-51 37.29344475715769 38.0 38.0 38.0 37.0 38.0 52-53 37.27780951879437 38.0 38.0 38.0 37.0 38.0 54-55 37.26687697576704 38.0 38.0 38.0 37.0 38.0 56-57 37.27236124859638 38.0 38.0 38.0 37.0 38.0 58-59 37.26984919445751 38.0 38.0 38.0 37.0 38.0 60-61 37.271208401015215 38.0 38.0 38.0 37.0 38.0 62-63 37.277750232748474 38.0 38.0 38.0 37.0 38.0 64-65 37.28183849401736 38.0 38.0 38.0 37.0 38.0 66-67 37.28584529190228 38.0 38.0 38.0 37.0 38.0 68-69 37.2860060428263 38.0 38.0 38.0 37.0 38.0 70-71 37.29302585937978 38.0 38.0 38.0 37.0 38.0 72-73 37.26847518779232 38.0 38.0 38.0 37.0 38.0 74-75 37.27054349074277 38.0 38.0 38.0 37.0 38.0 76-77 37.270959237004 38.0 38.0 38.0 37.0 38.0 78-79 37.25987828443134 38.0 38.0 38.0 37.0 38.0 80-81 37.255239678742115 38.0 38.0 38.0 37.0 38.0 82-83 37.260720837056404 38.0 38.0 38.0 37.0 38.0 84-85 37.24979015961927 38.0 38.0 38.0 37.0 38.0 86-87 37.23782006905108 38.0 38.0 38.0 37.0 38.0 88-89 37.222620431556436 38.0 38.0 38.0 37.0 38.0 90-91 37.21429633075605 38.0 38.0 38.0 36.5 38.0 92-93 37.21438132605774 38.0 38.0 38.0 37.0 38.0 94-95 37.17997550626232 38.0 38.0 38.0 36.0 38.0 96-97 37.19529470841421 38.0 38.0 38.0 36.0 38.0 98-99 37.18896333318123 38.0 38.0 38.0 36.0 38.0 100 35.72767306961011 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 18.0 20 58.0 21 159.0 22 416.0 23 926.0 24 2023.0 25 3897.0 26 6732.0 27 10909.0 28 17189.0 29 25723.0 30 36448.0 31 48424.0 32 62977.0 33 82370.0 34 117214.0 35 210051.0 36 641915.0 37 4983127.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.76311022756616 20.997658136575527 14.420234416721142 23.818997219137174 2 14.27945656069216 20.950586827420263 42.45458006962576 22.315376542261813 3 17.612131230103838 26.59720429054721 30.916820812411267 24.87384366693768 4 12.080786768839618 18.60746318180495 39.428913614068975 29.882836435286464 5 12.939440765715965 37.8902811275309 36.015350927017174 13.154927179735957 6 29.12854068841942 38.39398132964299 19.166857316556143 13.310620665381446 7 25.775200309475384 33.09724316695192 23.369022832768426 17.758533690804274 8 23.843370594965968 36.87346574139727 21.724717850002946 17.558445813633817 9 25.258552833666105 17.017339246403523 21.58731377668561 36.136794143244764 10-11 23.63204650833891 27.079519686019438 29.42650263703613 19.861931168605526 12-13 24.601180882791958 24.63588167366282 29.387834213091974 21.37510323045325 14-15 21.802041491366197 26.113291131899413 27.035605910013917 25.049061466720474 16-17 21.285199544746103 29.239711911442427 27.778127078807753 21.696961465003717 18-19 21.343282173264615 28.201327941192 29.56652168807429 20.888868197469098 20-21 22.20911839631569 27.283098795025744 29.40242287545634 21.10535993320222 22-23 21.86047181357844 27.45710240226547 29.238930619885284 21.4434951642708 24-25 21.736377743975172 27.529599547904798 29.366612314762325 21.36741039335771 26-27 21.746358912010795 27.636745518036264 29.285798064689665 21.331097505263273 28-29 21.521659966497822 27.57312494647735 29.39103828740323 21.514176799621602 30-31 21.77271001909756 27.49755612422211 29.42077940930709 21.30895444737323 32-33 21.383557814146684 27.443937604948133 29.531788214207317 21.64071636669787 34-35 21.512110845892735 27.5290688966912 29.3999991625813 21.55882109483477 36-37 21.52009868201864 27.514316461731443 29.540616571773477 21.42496828447644 38-39 21.432731849618357 27.53191259129143 29.532263254520892 21.50309230456932 40-41 21.66619030030736 27.409538847335362 29.467072983967064 21.457197868390214 42-43 21.777924579437844 27.41523475270219 29.260293607534354 21.546547060325615 44-45 21.657259456141762 27.67007456389134 29.136216253239272 21.53644972672763 46-47 21.856370366654087 27.464634056511343 28.81483966046278 21.864155916371786 48-49 21.73450311191604 27.564014103311514 28.883257558145342 21.818225226627103 50-51 21.64432801001903 27.689679201640327 28.869581062345446 21.7964117259952 52-53 21.812341099770794 27.637659872977956 28.953263813075225 21.59673521417603 54-55 21.778699818220442 27.620283435124037 28.727134203908587 21.87388254274693 56-57 21.9603012122763 27.832340923504006 28.456924414052732 21.750433450166963 58-59 21.63655032598221 28.03542501825601 28.81897242371843 21.50905223204335 60-61 21.89280896171425 28.26512410186417 28.412880456551875 21.429186479869703 62-63 21.697750897471792 28.46253652401997 28.317165319134546 21.52254725937369 64-65 21.626772222761616 28.440918514025597 28.346200573307634 21.586108689905153 66-67 21.732584592417496 28.420979215428293 28.22262309203068 21.623813100123527 68-69 21.743733004857415 28.250642619750387 28.30155018941595 21.704074185976246 70-71 21.776357100155735 27.969703568903782 28.421534868035174 21.832404462905313 72-73 21.877786367306243 27.77746427587574 28.431074435625085 21.91367492119293 74-75 21.85434195254218 27.846366495374138 28.343561118683088 21.955730433400596 76-77 21.90761050247473 27.836790116343803 28.27954161648044 21.976057764701025 78-79 21.896723320456758 27.826796266737187 28.29697628694932 21.97950412585673 80-81 21.933122997765274 27.861568055041896 28.20686308817681 21.998445859016016 82-83 21.99412030004872 27.82397302598401 28.283166832338047 21.898739841629222 84-85 22.107079489441066 27.78414467293112 28.172784424653713 21.935991412974097 86-87 21.917270901767594 27.807132552836027 28.2476904688963 22.027906076500077 88-89 22.01691706122632 27.777588457483347 28.180141123041523 22.025353358248807 90-91 22.06666146044256 27.829888484151095 28.180089387995043 21.923360667411306 92-93 22.097380865231823 27.805393057321343 28.160001666945377 21.937224410501457 94-95 22.019829186636738 27.86458338936105 28.129945006418893 21.985642417583314 96-97 22.055590404176936 27.99737148076312 28.22938456168162 21.71765355337832 98-99 23.20195522154287 29.833783489760034 28.430691620286737 18.533569668410358 100 22.022462067139323 30.76488893401743 22.390740818167156 24.821908180676093 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1113.0 1 1054.0 2 1494.0 3 2261.5 4 2840.5 5 3583.0 6 4355.5 7 5676.0 8 7493.5 9 8891.0 10 9433.5 11 9641.5 12 10646.0 13 12655.5 14 16210.0 15 20047.5 16 22437.0 17 23568.5 18 23226.0 19 21732.5 20 20567.5 21 20489.0 22 21923.5 23 26340.5 24 33672.5 25 43396.0 26 56270.5 27 70693.0 28 85625.5 29 101843.5 30 117202.5 31 131812.0 32 147588.5 33 163136.0 34 178246.5 35 192468.5 36 207038.0 37 219714.5 38 228825.5 39 235947.5 40 243474.5 41 251098.0 42 254840.5 43 257726.5 44 269989.0 45 282953.0 46 276927.5 47 268011.5 48 261732.0 49 251488.5 50 243508.0 51 233739.5 52 221648.0 53 209035.0 54 195523.5 55 180356.5 56 164343.5 57 147028.0 58 129047.5 59 111365.5 60 93286.0 61 75319.5 62 58587.0 63 44893.5 64 33890.0 65 25028.5 66 18117.5 67 13373.0 68 9956.0 69 7126.5 70 5094.0 71 3681.5 72 2624.5 73 1826.0 74 1210.0 75 753.5 76 496.5 77 315.0 78 199.5 79 124.5 80 83.5 81 61.5 82 40.5 83 29.5 84 23.0 85 14.0 86 8.5 87 6.5 88 4.5 89 2.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.8797336822290677E-4 3 0.0 4 0.0 5 0.008511212883032577 6 4.4795857279118827E-4 7 0.0 8 3.1997040913656305E-5 9 2.8797336822290677E-4 10-11 0.0 12-13 0.0 14-15 7.999260228414076E-6 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.0399970880081536E-4 26-27 4.8004301185386205E-5 28-29 6.96289823676207E-4 30-31 3.3647742108322657E-4 32-33 0.0016298459313866978 34-35 3.462392260216654E-4 36-37 0.001520251857214064 38-39 7.322380408238979E-4 40-41 7.780135022195906E-4 42-43 1.3192343460683147E-4 44-45 6.649767391136658E-5 46-47 5.956581221047135E-4 48-49 0.001693208557408321 50-51 0.0018101827046435029 52-53 0.0018938112486534572 54-55 0.0013282345332297368 56-57 0.003258818806082673 58-59 4.4208574995824497E-4 60-61 4.461510017696133E-5 62-63 0.0020980413838212735 64-65 0.002499931138260464 66-67 0.0032620275550359176 68-69 7.530098780951378E-4 70-71 0.0047879727629255514 72-73 0.0012486963752822555 74-75 0.004151303552658612 76-77 3.6982601243277195E-4 78-79 0.001141248376180651 80-81 0.0 82-83 3.0167768996945814E-5 84-85 9.552792133783805E-4 86-87 0.0 88-89 1.0389527273392201E-5 90-91 0.0032476534390127472 92-93 5.634413723305637E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 44.0 20-21 136.0 22-23 296.0 24-25 462.0 26-27 1421.0 28-29 4142.0 30-31 12695.0 32-33 16779.0 34-35 23090.0 36-37 35769.0 38-39 40523.0 40-41 40241.0 42-43 46469.0 44-45 54813.0 46-47 54791.0 48-49 51060.0 50-51 47702.0 52-53 47981.0 54-55 51496.0 56-57 52620.0 58-59 51750.0 60-61 50945.0 62-63 51732.0 64-65 56339.0 66-67 61874.0 68-69 64044.0 70-71 71085.0 72-73 56045.0 74-75 53064.0 76-77 54937.0 78-79 55710.0 80-81 55083.0 82-83 52358.0 84-85 52794.0 86-87 54034.0 88-89 55187.0 90-91 54457.0 92-93 53911.0 94-95 63171.0 96-97 185148.0 98-99 396228.0 100-101 4018152.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.72301202928851 #Duplication Level Percentage of deduplicated Percentage of total 1 90.88457931624495 79.72669044635781 2 6.715112529885103 11.781397944742736 3 1.4932823247167846 3.929856700027632 4 0.46986140763555306 1.648706316564482 5 0.1974320195747895 0.8659665714062992 6 0.08709150893550803 0.45839576915990743 7 0.046923523413124765 0.2881390966178301 8 0.029263235470924936 0.205364732578548 9 0.02024390083999362 0.15982703612158353 >10 0.05447492310339206 0.7160995619631443 >50 9.601304429627348E-4 0.05643995400515052 >100 6.720081934170984E-4 0.09865356239738057 >500 1.0317154352557325E-4 0.06446230805744387 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.5998520456828152E-5 0.0 0.0 0.0 3 0.0 1.5998520456828152E-5 0.0 0.0 0.0 4 0.0 4.799556137048446E-5 0.0 0.0 0.0 5 0.0 1.1198964319779707E-4 0.0 3.1997040913656305E-5 0.0 6 0.0 1.1198964319779707E-4 0.0 3.1997040913656305E-5 0.0 7 0.0 1.1198964319779707E-4 0.0 6.399408182731261E-5 0.0 8 0.0 1.2798816365462522E-4 0.0 6.399408182731261E-5 0.0 9 0.0 2.07980765938766E-4 0.0 7.999260228414076E-5 0.0 10-11 0.0 2.2397928639559413E-4 0.0 7.999260228414076E-5 0.0 12-13 0.0 2.4797706708083636E-4 0.0 9.599112274096891E-5 0.0 14-15 0.0 3.439681898218053E-4 0.0 9.599112274096891E-5 1.5998520456828152E-5 16-17 0.0 3.599667102786334E-4 0.0 9.599112274096891E-5 1.5998520456828152E-5 18-19 0.0 3.759652307354616E-4 0.0 1.1198964319779707E-4 1.5998520456828152E-5 20-21 0.0 4.15961531877532E-4 0.0 1.2798816365462522E-4 1.5998520456828152E-5 22-23 0.0 4.239607921059461E-4 0.0 1.2798816365462522E-4 4.799556137048446E-5 24-25 0.0 4.8795487393325863E-4 0.0 1.5198594433986747E-4 7.999260228414076E-5 26-27 0.0 5.359504353037431E-4 0.0 1.9198224548193783E-4 7.999260228414076E-5 28-29 0.0 5.599482159889854E-4 0.0 4.639570932480164E-4 7.999260228414076E-5 30-31 0.0 5.999445171310557E-4 0.0 0.0013998705399724633 7.999260228414076E-5 32-33 0.0 6.079437773594698E-4 0.0 0.002919729983371138 7.999260228414076E-5 34-35 0.0 6.719378591867823E-4 0.0 0.004863550218875759 7.999260228414076E-5 36-37 0.0 7.759282421561654E-4 0.0 0.00787127206475945 7.999260228414076E-5 38-39 0.0 9.119156660392047E-4 0.0 0.012022888123306357 9.599112274096891E-5 40-41 0.0 9.43912706952861E-4 0.0 0.016822444260354803 9.599112274096891E-5 42-43 0.0 9.919082683233454E-4 0.0 0.021622000397403248 9.599112274096891E-5 44-45 0.0 0.0011038979115211424 0.0 0.0272214825572931 9.599112274096891E-5 46-47 0.0 0.0012158875547189395 0.0 0.033132935866091104 9.599112274096891E-5 48-49 0.0 0.0012398853354041819 0.0 0.038700420985067305 1.1198964319779707E-4 50-51 0.0 0.0013358764581451509 0.0 0.04487584988140297 1.1198964319779707E-4 52-53 0.0 0.0013518749786019788 0.0 0.05081130097088621 1.1998890342621114E-4 54-55 0.0 0.0013918712797440494 0.0 0.056834743922882014 1.2798816365462522E-4 56-57 0.0 0.0014558653615713618 0.0 0.06285018761464939 1.2798816365462522E-4 58-59 0.0 0.0015038609229418463 0.0 0.06882563500527471 1.359874238830393E-4 60-61 7.999260228414076E-6 0.0015198594433986745 0.0 0.07420113787876897 1.5198594433986747E-4 62-63 1.5998520456828152E-5 0.001567855004769159 0.0 0.07951264667043592 1.5998520456828152E-4 64-65 1.5998520456828152E-5 0.0017438387297942686 0.0 0.08488814954393017 1.5998520456828152E-4 66-67 1.5998520456828152E-5 0.0018158320718499954 0.0 0.09039963984130747 1.5998520456828152E-4 68-69 1.5998520456828152E-5 0.0018558283729920657 0.0 0.09613510942508037 1.5998520456828152E-4 70-71 1.5998520456828152E-5 0.001895824674134136 0.0 0.10104665520532662 1.5998520456828152E-4 72-73 1.5998520456828152E-5 0.0019198224548193784 0.0 0.10519827126387352 1.9198224548193783E-4 74-75 1.5998520456828152E-5 0.0019438202355046208 0.0 0.10827798645181294 1.999815057103519E-4 76-77 1.5998520456828152E-5 0.0020398113582455893 0.0 0.11120571569541249 2.07980765938766E-4 78-79 1.5998520456828152E-5 0.002111804700301316 0.0 0.113205530752516 2.07980765938766E-4 80-81 1.5998520456828152E-5 0.002111804700301316 0.0 0.1139414626935301 2.1598002616718008E-4 82-83 1.5998520456828152E-5 0.002175798782128629 0.0 0.11463739833340213 2.2397928639559413E-4 84-85 1.5998520456828152E-5 0.0022797891650980116 0.0 0.1149573687425387 2.3197854662400822E-4 86-87 1.5998520456828152E-5 0.0024797706708083638 0.0 0.11509335616642173 2.399778068524223E-4 88 1.5998520456828152E-5 0.002527766232178848 0.0 0.11512535320733538 2.399778068524223E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8040 0.0 50.998672 1 GTATCAA 14735 0.0 36.882133 1 CTTATAC 5560 0.0 36.339848 1 TCAACGC 17620 0.0 30.458622 4 ATCAACG 17600 0.0 30.421032 3 CAACGCA 17855 0.0 30.034016 5 TATCAAC 18425 0.0 29.265802 2 AACGCAG 18705 0.0 28.757015 6 TATACAC 8390 0.0 27.464804 3 ACGCAGA 21290 0.0 25.26518 7 TGGTATC 3525 0.0 25.114626 2 CGCAGAG 21590 0.0 24.894497 8 TTATACA 8840 0.0 24.38962 2 GTGGTAT 3740 0.0 24.350416 1 ACATCTC 9285 0.0 22.534058 8 ACACATC 9715 0.0 21.362453 6 GCAGAGT 25710 0.0 20.822811 9 TACACAT 11270 0.0 20.52146 5 TATGCCG 5745 0.0 20.403492 42-43 CTCGTAT 5735 0.0 19.88434 38-39 >>END_MODULE