##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140048_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6383959 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.52843650781592 33.0 32.0 33.0 27.0 34.0 2 31.990611625168647 33.0 32.0 33.0 30.0 34.0 3 32.687085709666995 33.0 33.0 34.0 31.0 34.0 4 32.68547730334734 33.0 33.0 34.0 31.0 34.0 5 33.20726903164635 34.0 33.0 34.0 33.0 34.0 6 37.27140164903941 38.0 38.0 38.0 36.0 38.0 7 37.368890527022494 38.0 38.0 38.0 37.0 38.0 8 37.49034697747902 38.0 38.0 38.0 37.0 38.0 9 37.50926846491339 38.0 38.0 38.0 37.0 38.0 10-11 37.527530878566104 38.0 38.0 38.0 37.0 38.0 12-13 37.55085887926285 38.0 38.0 38.0 37.5 38.0 14-15 37.520744494129744 38.0 38.0 38.0 37.0 38.0 16-17 37.54520118315296 38.0 38.0 38.0 38.0 38.0 18-19 37.4611690801899 38.0 38.0 38.0 37.0 38.0 20-21 37.538421929541144 38.0 38.0 38.0 37.5 38.0 22-23 37.54762102250054 38.0 38.0 38.0 38.0 38.0 24-25 37.54986519587425 38.0 38.0 38.0 38.0 38.0 26-27 37.52795170986515 38.0 38.0 38.0 38.0 38.0 28-29 37.45849794574498 38.0 38.0 38.0 37.0 38.0 30-31 37.49655773405718 38.0 38.0 38.0 37.0 38.0 32-33 37.485436133782834 38.0 38.0 38.0 37.0 38.0 34-35 37.462747285391835 38.0 38.0 38.0 37.0 38.0 36-37 37.44405498165631 38.0 38.0 38.0 37.0 38.0 38-39 37.422265192254 38.0 38.0 38.0 37.0 38.0 40-41 37.423487942371025 38.0 38.0 38.0 37.0 38.0 42-43 37.3666698730046 38.0 38.0 38.0 37.0 38.0 44-45 37.38026567466478 38.0 38.0 38.0 37.0 38.0 46-47 37.36779586053815 38.0 38.0 38.0 37.0 38.0 48-49 37.33976060408744 38.0 38.0 38.0 37.0 38.0 50-51 37.31233321753925 38.0 38.0 38.0 37.0 38.0 52-53 37.29562872106479 38.0 38.0 38.0 37.0 38.0 54-55 37.28450183909007 38.0 38.0 38.0 37.0 38.0 56-57 37.28853538785606 38.0 38.0 38.0 37.0 38.0 58-59 37.28330277240555 38.0 38.0 38.0 37.0 38.0 60-61 37.28172262039175 38.0 38.0 38.0 37.0 38.0 62-63 37.28059610638571 38.0 38.0 38.0 37.0 38.0 64-65 37.279957294068026 38.0 38.0 38.0 37.0 38.0 66-67 37.27802067978465 38.0 38.0 38.0 37.0 38.0 68-69 37.27755476037909 38.0 38.0 38.0 37.0 38.0 70-71 37.27981953318751 38.0 38.0 38.0 37.0 38.0 72-73 37.253335249753505 38.0 38.0 38.0 37.0 38.0 74-75 37.25112897219981 38.0 38.0 38.0 37.0 38.0 76-77 37.25123059967858 38.0 38.0 38.0 37.0 38.0 78-79 37.236809741521824 38.0 38.0 38.0 37.0 38.0 80-81 37.22968341000721 38.0 38.0 38.0 37.0 38.0 82-83 37.23318637519962 38.0 38.0 38.0 37.0 38.0 84-85 37.21769029629783 38.0 38.0 38.0 37.0 38.0 86-87 37.20251923001854 38.0 38.0 38.0 36.5 38.0 88-89 37.1858541011313 38.0 38.0 38.0 36.5 38.0 90-91 37.175439179596594 38.0 38.0 38.0 36.0 38.0 92-93 37.172713426443885 38.0 38.0 38.0 36.0 38.0 94-95 37.13396009015301 38.0 38.0 38.0 36.0 38.0 96-97 37.14590342828372 38.0 38.0 38.0 36.0 38.0 98-99 37.133380727760766 38.0 38.0 38.0 36.0 38.0 100 35.64869145025746 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 19.0 20 79.0 21 175.0 22 415.0 23 1036.0 24 2201.0 25 4090.0 26 7167.0 27 11890.0 28 18044.0 29 26701.0 30 37392.0 31 49900.0 32 64890.0 33 85605.0 34 124399.0 35 219412.0 36 648389.0 37 5082150.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.46763144938744 20.98439228698054 14.393074892868201 24.154901370763817 2 14.192225207665674 20.895343768165706 42.44326269408276 22.46916833008586 3 17.673124153836202 26.29108363634541 30.782042929786986 25.2537492800314 4 12.176080704778961 18.497769174269447 39.28366394583674 30.042486175114846 5 13.136255892059676 37.607589961366855 36.07145995874599 13.18469418782748 6 29.330126737097746 38.3077712078026 19.06903966901862 13.293062386081036 7 25.86514105118783 32.80500391684846 23.335221921068104 17.994633110895606 8 23.720577604322084 37.11644270675467 21.712778363882578 17.450201325040666 9 24.94261769813831 17.263061963174138 21.588464923761 36.20585541492656 10-11 23.645609252816318 26.988276397138517 29.430922097087404 19.935192252957766 12-13 24.521578224421553 24.462962559753283 29.357762166079077 21.65769704974609 14-15 21.770160316674993 25.97108048243108 26.789013431086683 25.469745769807243 16-17 21.486917444175315 29.217567030114072 27.50652847237897 21.788987053331642 18-19 21.547060374291252 28.204058014783616 29.103037785800318 21.145843825124818 20-21 22.21674225574218 27.377398216345316 28.984686221923134 21.42117330598937 22-23 21.86990568958669 27.58212048946579 28.820854703345034 21.727119117602484 24-25 21.80367833569327 27.637852209388114 28.951593883064614 21.606875571854 26-27 21.8198452572914 27.762872090348882 28.9175436694427 21.49973898291701 28-29 21.490097303860765 27.617917989813094 29.07355014677307 21.81843455955307 30-31 21.981865280910753 27.376082347327973 29.175202949436663 21.46684942232461 32-33 21.645134999710102 27.759022253186384 28.92211094083965 21.673731806263863 34-35 21.659256617855057 27.801456788085627 29.17613004556912 21.363156548490196 36-37 21.9237331456758 27.565250984048163 28.899568444576378 21.611447425699662 38-39 21.60993019524534 27.519355366345277 29.11595711223074 21.754757326178645 40-41 21.86704146538331 27.37696764533143 29.10694736734471 21.649043521940552 42-43 21.934742827245188 27.391135203302774 28.989140837764648 21.68498113168739 44-45 21.788968022974796 27.62493630537953 28.85882618752295 21.72726948412272 46-47 22.072204541350207 27.394604043359738 28.496827838221584 22.036363577068467 48-49 21.903834870645348 27.44776298322255 28.633491028902586 22.01491111722952 50-51 21.752951756702647 27.636858237383 28.701574661993668 21.908615343920687 52-53 21.956045923154953 27.58665260388662 28.76059917043376 21.696702302524667 54-55 21.863221278301666 27.643411235318254 28.508972057757997 21.98439542862208 56-57 22.05116760077887 27.879823040953166 28.226714142713753 21.842295215554202 58-59 21.73342335480767 28.168526067211996 28.551211141035832 21.546839436944502 60-61 21.96009044391691 28.408629619230837 28.10594922699542 21.52533070985683 62-63 21.8148616366526 28.596054178167936 28.056096691214943 21.532987493964516 64-65 21.778273016358295 28.51970819362845 28.06224894769332 21.639769842319932 66-67 21.832619868645736 28.532895209121634 27.929985834309544 21.704499087923086 68-69 21.84264726736107 28.349807554102735 28.039450672692762 21.768094505843433 70-71 21.887362248983955 28.033080001346033 28.13196671610852 21.94759103356149 72-73 22.024477395995273 27.77813603506009 28.182874408799368 22.014512160145266 74-75 21.918037545759603 27.873858873424407 28.148248254495435 22.05985532632056 76-77 22.038103188624095 27.8578624048111 28.06883359508992 22.035200811474883 78-79 22.04200369591049 27.84730307104691 28.03875747080708 22.07193576223552 80-81 22.051397992468626 27.806653812173938 28.050738703415902 22.091209491941537 82-83 22.078540961399185 27.82831489919407 28.101447066208557 21.991697073198196 84-85 22.20946013470295 27.72815232958248 28.035064211320066 22.0273233243945 86-87 22.026386283940784 27.79049705824899 28.06573309403046 22.117383563779764 88-89 22.119822979999608 27.78140004899921 28.01194863321567 22.08682833778551 90-91 22.144962579583666 27.834082624526204 28.0145059562103 22.00644883967983 92-93 22.16350722295088 27.768942025460248 27.991562745141827 22.075988006447048 94-95 22.108262368949728 27.887213397424947 27.97296033314626 22.03156390047906 96-97 22.20822738281065 27.9474855636499 28.04763319418091 21.79665385935854 98-99 23.30162768677747 29.886946602152175 28.2286154037135 18.582810307356855 100 22.077965065588295 30.796214992696765 22.28027721788629 24.845542723828654 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 772.0 1 744.5 2 1123.0 3 1724.0 4 2210.0 5 2880.0 6 3551.0 7 4528.5 8 5743.0 9 6693.5 10 7209.5 11 7673.5 12 8728.5 13 10447.5 14 13248.5 15 16159.0 16 18039.0 17 19029.5 18 18890.0 19 17889.5 20 17249.5 21 17699.5 22 19577.5 23 23748.5 24 30623.0 25 40221.5 26 52995.5 27 67918.0 28 82346.5 29 97002.5 30 111951.5 31 126686.5 32 142424.0 33 158163.0 34 173543.0 35 188081.0 36 203132.0 37 216947.0 38 227788.0 39 237846.0 40 248564.5 41 257569.5 42 265655.0 43 284949.5 44 294203.0 45 290833.5 46 288159.0 47 278953.0 48 270042.5 49 261180.0 50 252345.5 51 241090.0 52 226648.5 53 211007.0 54 194726.5 55 178031.0 56 161553.0 57 144626.0 58 127210.5 59 109748.0 60 90671.5 61 72698.5 62 57097.5 63 43658.5 64 32607.5 65 23863.5 66 17608.0 67 13453.0 68 10144.5 69 7374.0 70 5262.5 71 3798.0 72 2794.0 73 1880.5 74 1237.0 75 840.5 76 574.0 77 363.5 78 233.5 79 148.0 80 81.0 81 44.5 82 27.0 83 20.5 84 14.5 85 10.5 86 8.0 87 7.5 88 10.0 89 9.0 90 6.5 91 5.0 92 2.5 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 3.1328522003352466E-4 3 0.0 4 0.0 5 0.009085271380972215 6 5.482491350586681E-4 7 0.0 8 6.265704400670493E-5 9 3.446137420368771E-4 10-11 0.0 12-13 0.0 14-15 7.832130500838116E-6 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.4882574917315548E-4 26-27 3.1334573973565523E-5 28-29 6.033558338044601E-4 30-31 3.0584658688148706E-4 32-33 0.0016183645091091925 34-35 3.701335607265927E-4 36-37 0.0014146825875097754 38-39 7.387868833393549E-4 40-41 9.106797329503579E-4 42-43 1.3658698530107108E-4 44-45 9.707378359875328E-5 46-47 5.299477553043693E-4 48-49 0.0017007465044729631 50-51 0.0017131970715420337 52-53 0.001816705725839772 54-55 0.0015360576953342877 56-57 0.0030370978541930773 58-59 4.3492565585509713E-4 60-61 2.579002364515335E-5 62-63 0.0021934912438950718 64-65 0.002640917661171838 66-67 0.003213953502745767 68-69 8.477917523605647E-4 70-71 0.004997764988671582 72-73 0.0011143402621549405 74-75 0.003945372810537022 76-77 3.44190977247488E-4 78-79 9.861424446133097E-4 80-81 0.0 82-83 0.0 84-85 9.568252422483383E-4 86-87 0.0 88-89 4.9275128369100667E-5 90-91 0.0029671389362806912 92-93 5.029814729792317E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 54.0 20-21 186.0 22-23 322.0 24-25 486.0 26-27 1290.0 28-29 3379.0 30-31 10694.0 32-33 14088.0 34-35 19836.0 36-37 30709.0 38-39 35213.0 40-41 35144.0 42-43 40144.0 44-45 47512.0 46-47 47999.0 48-49 44954.0 50-51 41753.0 52-53 42201.0 54-55 45831.0 56-57 47623.0 58-59 46353.0 60-61 49227.0 62-63 48728.0 64-65 52277.0 66-67 58437.0 68-69 61515.0 70-71 70176.0 72-73 51856.0 74-75 48388.0 76-77 50984.0 78-79 51403.0 80-81 50993.0 82-83 48923.0 84-85 48430.0 86-87 50560.0 88-89 51457.0 90-91 51775.0 92-93 51174.0 94-95 60259.0 96-97 193707.0 98-99 418165.0 100-101 4259754.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.35098754531019 #Duplication Level Percentage of deduplicated Percentage of total 1 89.89860701629671 77.62833494804971 2 7.2967855897840606 12.601692831684847 3 1.6659543659247342 4.315704141090656 4 0.5792190016507809 2.0006453119021432 5 0.24396955177146754 1.0533505863226449 6 0.1203695139683378 0.6236415840908986 7 0.062465598420002835 0.37757762778232085 8 0.04203998523353739 0.29041553930449693 9 0.025192868791572814 0.19578861893265637 >10 0.06464614087537245 0.8095857526315114 >50 4.219367286131634E-4 0.022390558800526764 >100 2.758172771435433E-4 0.046094242415715386 >500 5.261327766363223E-5 0.03477825699187962 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 1.5664261001676233E-5 0.0 3 0.0 0.0 0.0 1.5664261001676233E-5 0.0 4 0.0 6.265704400670493E-5 0.0 3.1328522003352465E-5 0.0 5 0.0 6.265704400670493E-5 0.0 3.1328522003352465E-5 0.0 6 0.0 6.265704400670493E-5 0.0 3.1328522003352465E-5 0.0 7 0.0 6.265704400670493E-5 0.0 3.1328522003352465E-5 0.0 8 0.0 6.265704400670493E-5 0.0 3.1328522003352465E-5 0.0 9 0.0 1.5664261001676233E-4 0.0 4.69927830050287E-5 0.0 10-11 0.0 1.5664261001676233E-4 0.0 9.39855660100574E-5 0.0 12-13 0.0 1.5664261001676233E-4 0.0 9.39855660100574E-5 0.0 14-15 0.0 2.506281760268197E-4 0.0 9.39855660100574E-5 0.0 16-17 7.832130500838116E-6 2.6629243702849597E-4 0.0 9.39855660100574E-5 0.0 18-19 1.5664261001676233E-5 2.976209590318484E-4 0.0 9.39855660100574E-5 1.5664261001676233E-5 20-21 1.5664261001676233E-5 3.2894948103520086E-4 0.0 9.39855660100574E-5 1.5664261001676233E-5 22-23 1.5664261001676233E-5 3.2894948103520086E-4 0.0 1.1748195751257174E-4 3.1328522003352465E-5 24-25 1.5664261001676233E-5 3.36781611536039E-4 0.0 1.6447474051760043E-4 4.69927830050287E-5 26-27 1.5664261001676233E-5 3.446137420368771E-4 0.0 2.4279604552598162E-4 4.69927830050287E-5 28-29 1.5664261001676233E-5 3.524458725377152E-4 0.0 4.5426356904861075E-4 4.69927830050287E-5 30-31 1.5664261001676233E-5 4.0727078604358205E-4 0.0 0.0012923015326382892 4.69927830050287E-5 32-33 1.5664261001676233E-5 4.0727078604358205E-4 0.0 0.002968377459817646 6.265704400670493E-5 34-35 1.5664261001676233E-5 5.169206130553156E-4 0.0 0.005208366783057347 7.832130500838117E-5 36-37 1.5664261001676233E-5 6.344025705678875E-4 0.0 0.008724993377933662 7.832130500838117E-5 38-39 1.5664261001676233E-5 6.500668315695636E-4 0.0 0.013941192291491846 8.615343550921929E-5 40-41 1.5664261001676233E-5 6.73563223072078E-4 0.0 0.01946284429458272 9.39855660100574E-5 42-43 1.5664261001676233E-5 6.813953535729162E-4 0.0 0.02489834286216437 9.39855660100574E-5 44-45 1.5664261001676233E-5 7.753809195829736E-4 0.0 0.0313363541338533 1.1748195751257174E-4 46-47 1.5664261001676233E-5 8.458700940905166E-4 0.0 0.03779786179704475 1.4097834901508608E-4 48-49 1.5664261001676233E-5 8.458700940905166E-4 0.0 0.04428286585173871 1.5664261001676233E-4 50-51 1.5664261001676233E-5 0.0010025127041072789 0.0 0.050572066643911714 1.5664261001676233E-4 52-53 1.5664261001676233E-5 0.0010181769651089552 0.0 0.05682210678358053 2.1929965402346725E-4 54-55 1.5664261001676233E-5 0.0010181769651089552 0.0 0.06374571014632144 2.897888285310103E-4 56-57 1.5664261001676233E-5 0.0010338412261106313 0.0 0.07071630629206735 2.976209590318484E-4 58-59 1.5664261001676233E-5 0.0010495054871123076 0.0 0.07734228869577639 2.976209590318484E-4 60-61 1.5664261001676233E-5 0.0010886661396164981 0.0 0.08361582522694773 2.976209590318484E-4 62-63 1.5664261001676233E-5 0.0011043304006181744 0.0 0.08898083462002185 2.976209590318484E-4 64-65 1.5664261001676233E-5 0.0013314621851424797 0.0 0.09468262562463198 2.976209590318484E-4 66-67 1.5664261001676233E-5 0.0013314621851424797 0.0 0.10043140941224717 2.976209590318484E-4 68-69 1.5664261001676233E-5 0.0013784549681475084 0.0 0.10590606863233301 2.976209590318484E-4 70-71 1.5664261001676233E-5 0.0014254477511525371 0.0 0.11073066102084929 3.1328522003352466E-4 72-73 1.5664261001676233E-5 0.0014411120121542134 0.0 0.1143491053122365 3.759422640402296E-4 74-75 1.5664261001676233E-5 0.0014411120121542134 0.0 0.11742713259906587 3.759422640402296E-4 76-77 1.5664261001676233E-5 0.0014567762731558895 0.0 0.12049732775539441 3.759422640402296E-4 78-79 3.1328522003352465E-5 0.0014567762731558895 0.0 0.12278430986163914 3.759422640402296E-4 80-81 3.1328522003352465E-5 0.0014646084036567277 0.0 0.12349703373721542 3.837743945410677E-4 82-83 3.1328522003352465E-5 0.0014724405341575658 0.0 0.12394346517576318 3.916065250419058E-4 84-85 3.1328522003352465E-5 0.0015037690561609184 0.0 0.12419409335179002 3.994386555427439E-4 86-87 3.1328522003352465E-5 0.0015742582306684614 0.0 0.12425675039579671 4.151029165444202E-4 88 3.1328522003352465E-5 0.001738732971186062 0.0 0.12428024678729922 4.229350470452583E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7580 0.0 41.11012 1 CTTATAC 6185 0.0 37.96024 1 GTATCAA 12700 0.0 34.844666 1 TCAACGC 14350 0.0 30.21024 4 ATCAACG 14500 0.0 29.86812 3 TATACAC 8950 0.0 29.734001 3 CAACGCA 14810 0.0 29.300892 5 AACGCAG 15425 0.0 28.3526 6 TATCAAC 15850 0.0 27.621815 2 TTATACA 9225 0.0 27.032803 2 ACGCAGA 17385 0.0 24.9831 7 CGCAGAG 17485 0.0 24.913855 8 ACATCTC 10770 0.0 22.435368 8 ACACATC 10845 0.0 22.359537 6 TACACAT 12365 0.0 22.285667 5 GCAGAGT 21400 0.0 20.295849 9 CACATCT 12210 0.0 19.789429 7 GTACATG 14815 0.0 19.758959 1 TACATGG 14870 0.0 19.512688 2 CATCTCC 12695 0.0 18.965778 9 >>END_MODULE