##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140047_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5978724 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.260749116366636 33.0 32.0 33.0 25.0 34.0 2 31.93198699254222 33.0 32.0 33.0 29.0 34.0 3 32.65467798814596 33.0 33.0 34.0 31.0 34.0 4 32.65929402327319 33.0 33.0 34.0 31.0 34.0 5 33.19343759638344 33.0 33.0 34.0 33.0 34.0 6 37.28184559113282 38.0 38.0 38.0 36.0 38.0 7 37.37943196575055 38.0 38.0 38.0 37.0 38.0 8 37.51353750398915 38.0 38.0 38.0 37.0 38.0 9 37.53124077980519 38.0 38.0 38.0 37.0 38.0 10-11 37.54583528190965 38.0 38.0 38.0 37.5 38.0 12-13 37.567911062628085 38.0 38.0 38.0 38.0 38.0 14-15 37.540420330491926 38.0 38.0 38.0 38.0 38.0 16-17 37.56632635993901 38.0 38.0 38.0 38.0 38.0 18-19 37.483483264990994 38.0 38.0 38.0 37.5 38.0 20-21 37.56009947556646 38.0 38.0 38.0 38.0 38.0 22-23 37.56883636461005 38.0 38.0 38.0 38.0 38.0 24-25 37.568920209575104 38.0 38.0 38.0 38.0 38.0 26-27 37.54603096692411 38.0 38.0 38.0 38.0 38.0 28-29 37.474612242258075 38.0 38.0 38.0 37.0 38.0 30-31 37.51478335354446 38.0 38.0 38.0 37.5 38.0 32-33 37.502640242894394 38.0 38.0 38.0 38.0 38.0 34-35 37.478744060475236 38.0 38.0 38.0 37.0 38.0 36-37 37.457524060498216 38.0 38.0 38.0 37.0 38.0 38-39 37.43899274507632 38.0 38.0 38.0 37.0 38.0 40-41 37.43647666884593 38.0 38.0 38.0 37.0 38.0 42-43 37.37189318649308 38.0 38.0 38.0 37.0 38.0 44-45 37.37714979620378 38.0 38.0 38.0 37.0 38.0 46-47 37.351338934671745 38.0 38.0 38.0 37.0 38.0 48-49 37.31322045493668 38.0 38.0 38.0 37.0 38.0 50-51 37.28091926665623 38.0 38.0 38.0 37.0 38.0 52-53 37.26431416053656 38.0 38.0 38.0 37.0 38.0 54-55 37.25579155851375 38.0 38.0 38.0 37.0 38.0 56-57 37.260472364733445 38.0 38.0 38.0 37.0 38.0 58-59 37.258156855785785 38.0 38.0 38.0 37.0 38.0 60-61 37.25973769914091 38.0 38.0 38.0 37.0 38.0 62-63 37.2645381228529 38.0 38.0 38.0 37.0 38.0 64-65 37.26774249129848 38.0 38.0 38.0 37.0 38.0 66-67 37.27197190929802 38.0 38.0 38.0 37.0 38.0 68-69 37.27203214829045 38.0 38.0 38.0 37.0 38.0 70-71 37.28062695924348 38.0 38.0 38.0 37.0 38.0 72-73 37.25543073378536 38.0 38.0 38.0 37.0 38.0 74-75 37.25566142189952 38.0 38.0 38.0 37.0 38.0 76-77 37.258144197557925 38.0 38.0 38.0 37.0 38.0 78-79 37.24874650134597 38.0 38.0 38.0 37.0 38.0 80-81 37.243961782271654 38.0 38.0 38.0 37.0 38.0 82-83 37.25064654112349 38.0 38.0 38.0 37.0 38.0 84-85 37.240287267776864 38.0 38.0 38.0 37.0 38.0 86-87 37.228056272018925 38.0 38.0 38.0 37.0 38.0 88-89 37.21392769531604 38.0 38.0 38.0 37.0 38.0 90-91 37.20554456829344 38.0 38.0 38.0 36.5 38.0 92-93 37.20510519762239 38.0 38.0 38.0 36.5 38.0 94-95 37.172151985932956 38.0 38.0 38.0 36.0 38.0 96-97 37.186344824786076 38.0 38.0 38.0 36.0 38.0 98-99 37.18486474253783 38.0 38.0 38.0 36.0 38.0 100 35.70630982952784 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 3.0 19 21.0 20 50.0 21 154.0 22 396.0 23 942.0 24 1934.0 25 3703.0 26 6716.0 27 10558.0 28 16667.0 29 24982.0 30 34994.0 31 47565.0 32 61275.0 33 80463.0 34 114667.0 35 203036.0 36 617811.0 37 4752786.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.870911585816636 21.253063362684077 14.333192166087613 23.54283288541167 2 14.21432039691552 21.24507606415639 42.733131249369634 21.807472289558454 3 17.65584094532546 27.146076654483466 30.853874505663747 24.34420789452733 4 11.952533684445042 18.717104184772538 39.65294266803418 29.67741946274824 5 12.760000307786704 38.22904884206962 35.90954148814202 13.101409362001656 6 28.484249996278454 38.58352413577741 19.548205905065938 13.384019962878199 7 25.556289268412456 33.38070130014364 23.537614380593585 17.525395050850314 8 23.70183795132137 36.98178306333695 21.945225083220127 17.37115390212156 9 25.405944253907403 17.046673072725493 21.76925978241144 35.778122890955665 10-11 23.529167762218158 27.31218233188219 29.409711838178183 19.748938067721475 12-13 24.5820847391517 24.91148612981633 29.444669130068558 21.061760000963417 14-15 21.81359266626123 26.219666604446033 27.23147949294866 24.735261236344076 16-17 21.064009644867365 29.456327136024342 27.94275166406745 21.53691155504084 18-19 21.142387573000526 28.349251445626187 29.84306517577998 20.6652958055933 20-21 22.150843399127297 27.356295654012335 29.674631322315488 20.81822962454488 22-23 21.77644084251008 27.562659362289903 29.45485133768982 21.20604845751019 24-25 21.46242637460281 27.73663502076532 29.697221722260547 21.10371688237132 26-27 21.411739317542228 27.906099846388244 29.646032170225077 21.036128665844448 28-29 21.224028145086958 27.766708300618554 29.830149206177087 21.179114348117402 30-31 21.51453986748666 27.834660672214994 29.582895377108574 21.067904083189767 32-33 21.653783141252163 27.614551759168464 29.58860327821624 21.14306182136313 34-35 21.47006608088632 27.678508733746888 29.672377354309436 21.17904783105736 36-37 21.295943395867415 27.85508340813773 29.628359908450406 21.22061328754444 38-39 21.19028079670908 27.653072192430766 29.83592795709622 21.32071905376393 40-41 21.435150745688382 27.513754224941938 29.826909667757157 21.224185361612527 42-43 21.52220168727904 27.518545096159198 29.61516039765968 21.344092818902084 44-45 21.435742644188526 27.760493707887758 29.448799914007584 21.354963733916133 46-47 21.606095624351138 27.59148586995997 29.132029907175532 21.67038859851336 48-49 21.5115048947633 27.642020201016155 29.183970040697393 21.66250486352315 50-51 21.404880998806433 27.824871028225555 29.1803666615733 21.589881311394713 52-53 21.551888234096815 27.772517337394646 29.211690711160447 21.46390371734809 54-55 21.548199408871305 27.81904863459844 28.98995919699095 21.642792759539308 56-57 21.745776338663582 27.988784748170247 28.705218627115237 21.560220286050935 58-59 21.424078325106947 28.291388099782523 29.022238831292952 21.262294743817574 60-61 21.680369380326862 28.462565284599005 28.62889864032403 21.2281666947501 62-63 21.424360878891 28.64136078036062 28.59201979702741 21.342258543720963 64-65 21.409007676455406 28.603328014344235 28.56376576006517 21.42389854913519 66-67 21.491616158966984 28.59753101569712 28.49283643441109 21.418016390924805 68-69 21.528459798959776 28.497633481063 28.513827283157106 21.46007943682012 70-71 21.544665321951435 28.19088713211088 28.646015668548095 21.61843187738959 72-73 21.64934985918099 28.008425507222473 28.68931470094126 21.652909932655277 74-75 21.620564304586054 28.069678220552852 28.620541220609496 21.689216254251594 76-77 21.706901607300235 28.004912828750534 28.537937886809182 21.75024767714005 78-79 21.70999317985635 28.03617827732762 28.49523000796637 21.758598534849664 80-81 21.666840831745063 28.021393154354772 28.51352789098508 21.798238122915084 82-83 21.756786031556103 28.01752655623503 28.517337866846503 21.708349545362367 84-85 21.873132597110335 27.988175649308534 28.419348917922278 21.719342835658857 86-87 21.7462319300441 27.99769241172375 28.429352540296225 21.826723117935924 88-89 21.83361306610626 27.94933692754686 28.42444923202776 21.79260077431912 90-91 21.86363235797733 27.955321994647832 28.42525982783373 21.755785819541106 92-93 21.861128059589195 28.0049312920491 28.383697787083257 21.75024286127845 94-95 21.82475565370536 28.088340768112403 28.33348156402663 21.753422014155614 96-97 21.87931751531561 28.187297861948103 28.38728932792473 21.546095294811558 98-99 22.94370451091914 30.070077017898328 28.65219557155249 18.334022899630046 100 21.757685320094254 31.016098091063093 22.630123767169163 24.596092821673487 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1066.0 1 1054.0 2 1624.5 3 2515.5 4 3239.0 5 4091.0 6 4800.0 7 6019.5 8 7791.5 9 9177.0 10 9776.5 11 10252.5 12 11450.5 13 13626.5 14 17335.5 15 21246.5 16 23775.5 17 24533.5 18 23569.5 19 21612.5 20 19679.0 21 18944.5 22 20566.0 23 24882.5 24 32034.5 25 42158.5 26 54919.0 27 69027.5 28 83785.5 29 99447.0 30 114419.0 31 129487.5 32 145905.0 33 161198.5 34 176206.5 35 190004.5 36 204237.5 37 218069.0 38 227620.0 39 235348.5 40 243354.0 41 249661.0 42 256405.0 43 271620.5 44 276153.0 45 270765.5 46 265995.5 47 257055.0 48 249459.5 49 241475.0 50 233230.5 51 222311.0 52 208798.5 53 194122.0 54 178133.0 55 161568.5 56 145503.5 57 129077.5 58 112262.0 59 96446.5 60 80294.5 61 64300.5 62 50019.5 63 38477.0 64 28984.0 65 21272.0 66 15331.5 67 11197.0 68 8311.0 69 5912.0 70 4084.0 71 2805.5 72 2026.5 73 1415.0 74 930.0 75 614.0 76 394.5 77 245.0 78 164.0 79 97.5 80 57.5 81 39.0 82 26.0 83 22.0 84 15.5 85 10.0 86 8.0 87 5.0 88 3.0 89 2.0 90 3.0 91 3.5 92 3.0 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 3.5124551660187025E-4 3 0.0 4 0.0 5 0.009333095155421123 6 4.516013784881188E-4 7 0.0 8 3.345195396208288E-5 9 1.5053379282937296E-4 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 8.363664161414704E-5 26-27 0.0 28-29 6.526179770147948E-4 30-31 2.5963233883259754E-4 32-33 0.0015445385745571016 34-35 3.367768201903092E-4 36-37 0.0014967702741761802 38-39 7.829468058280859E-4 40-41 8.312064730589702E-4 42-43 1.7260253993267637E-4 44-45 1.0444412356888703E-4 46-47 5.800836199327279E-4 48-49 0.0016596053564960991 50-51 0.0018539992600124693 52-53 0.001770680760803705 54-55 0.0014673192014393215 56-57 0.0030546302213705244 58-59 4.459899648541325E-4 60-61 1.8763982685347337E-5 62-63 0.002065305724932731 64-65 0.0026795196846128772 66-67 0.003174221911595791 68-69 8.620945547266931E-4 70-71 0.004890415994854449 72-73 0.0012269029239208558 74-75 0.004047158960506541 76-77 3.495638574001538E-4 78-79 0.0011129285476989734 80-81 0.0 82-83 3.1936134543954124E-5 84-85 0.001001141301083235 86-87 0.0 88-89 1.1018884274057724E-5 90-91 0.0031233024014849075 92-93 5.193659129312402E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 40.0 20-21 116.0 22-23 264.0 24-25 385.0 26-27 1310.0 28-29 3677.0 30-31 12711.0 32-33 16502.0 34-35 22752.0 36-37 35489.0 38-39 40792.0 40-41 40120.0 42-43 46534.0 44-45 54993.0 46-47 55935.0 48-49 52346.0 50-51 48599.0 52-53 47424.0 54-55 51120.0 56-57 53182.0 58-59 51961.0 60-61 52031.0 62-63 52137.0 64-65 55958.0 66-67 61546.0 68-69 64521.0 70-71 69331.0 72-73 56734.0 74-75 53425.0 76-77 55538.0 78-79 56255.0 80-81 54927.0 82-83 52409.0 84-85 52479.0 86-87 53854.0 88-89 55094.0 90-91 54488.0 92-93 53592.0 94-95 61280.0 96-97 176041.0 98-99 370508.0 100-101 3780324.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.426584937891 #Duplication Level Percentage of deduplicated Percentage of total 1 91.30127424167306 80.73459881668981 2 6.459441542645358 11.42372712444143 3 1.4127265912485092 3.7476776374516048 4 0.4393090616966004 1.5538640023239851 5 0.1777476818759889 0.785881024446018 6 0.07778859942910109 0.4127148116770191 7 0.0433528970231803 0.26834840416467265 8 0.024359056595742064 0.17231905496562236 9 0.017107761347715893 0.13615028207198712 >10 0.04548986343899308 0.5880162405350678 >50 8.989502357088719E-4 0.0527239230140164 >100 4.001389088560012E-4 0.06435555159923696 >500 1.0361388116074056E-4 0.05962312661972922 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 5.017793094312432E-5 0.0 3 0.0 0.0 0.0 5.017793094312432E-5 0.0 4 0.0 1.0035586188624863E-4 0.0 6.690390792416576E-5 0.0 5 0.0 1.3380781584833152E-4 0.0 6.690390792416576E-5 0.0 6 6.690390792416576E-5 1.3380781584833152E-4 0.0 6.690390792416576E-5 0.0 7 6.690390792416576E-5 1.3380781584833152E-4 0.0 1.3380781584833152E-4 0.0 8 6.690390792416576E-5 1.8398574679145583E-4 0.0 1.3380781584833152E-4 0.0 9 6.690390792416576E-5 3.177935626397874E-4 0.0 1.672597698104144E-4 0.0 10-11 6.690390792416576E-5 3.177935626397874E-4 0.0 2.0071172377249727E-4 0.0 12-13 6.690390792416576E-5 3.345195396208288E-4 0.0 2.592526432061423E-4 0.0 14-15 6.690390792416576E-5 4.348754015070774E-4 0.0 3.094305741492666E-4 0.0 16-17 1.1708183886729007E-4 4.5160137848811887E-4 0.0 3.5124551660187025E-4 0.0 18-19 1.1708183886729007E-4 5.268682749028054E-4 0.0 3.5124551660187025E-4 0.0 20-21 1.1708183886729007E-4 5.854091943364504E-4 0.0 3.5960850509239096E-4 0.0 22-23 1.1708183886729007E-4 6.690390792416576E-4 0.0 3.7633448207343237E-4 0.0 24-25 1.1708183886729007E-4 6.85765056222699E-4 0.0 4.265124130165567E-4 0.0 26-27 1.1708183886729007E-4 6.941280447132197E-4 0.0 4.934163209407225E-4 0.0 28-29 1.1708183886729007E-4 7.024910332037405E-4 0.0 6.941280447132197E-4 0.0 30-31 1.1708183886729007E-4 7.192170101847819E-4 0.0 0.0014718859743316466 0.0 32-33 1.1708183886729007E-4 7.192170101847819E-4 0.0 0.003203024591869436 0.0 34-35 1.1708183886729007E-4 8.028468950899892E-4 0.0 0.005753736081478255 0.0 36-37 1.1708183886729007E-4 8.864767799951963E-4 0.0 0.009951956303719657 0.0 38-39 1.1708183886729007E-4 9.032027569762377E-4 0.0 0.015964945028404055 0.0 40-41 1.1708183886729007E-4 9.533806879193621E-4 0.0 0.022479713062519696 0.0 42-43 1.1708183886729007E-4 0.0010119216073530071 0.0 0.02893594017720169 0.0 44-45 1.1708183886729007E-4 0.0011290034462202972 0.0 0.03650444476112294 0.0 46-47 1.1708183886729007E-4 0.0012042703426349837 0.0 0.04454963968900387 0.0 48-49 1.1708183886729007E-4 0.0012042703426349837 0.0 0.0530380730068824 0.0 50-51 1.5053379282937296E-4 0.001312989193011753 0.0 0.06095782310740552 0.0 52-53 1.5053379282937296E-4 0.0013464411469738358 0.0 0.0685765056222699 0.0 54-55 1.5053379282937296E-4 0.0013966190779169602 0.0 0.07597775043638075 0.0 56-57 1.5053379282937296E-4 0.0014384340203695638 0.0 0.08215799893087555 0.0 58-59 1.5053379282937296E-4 0.0014635229858411258 0.0 0.08867276696499118 0.0 60-61 1.672597698104144E-4 0.0014802489628221675 0.0 0.09512899407967318 0.0 62-63 2.0071172377249727E-4 0.0015053379282937295 0.0 0.1009914490115282 0.0 64-65 2.0071172377249727E-4 0.0015722418362178953 0.0 0.10737240922979552 0.0 66-67 2.0071172377249727E-4 0.0015889678131989367 0.0 0.1137031915171197 0.0 68-69 2.0071172377249727E-4 0.0016224197671610196 0.0 0.11980817311519984 0.0 70-71 2.174377007535387E-4 0.0016307827556515404 0.0 0.1250434039102658 0.0 72-73 2.174377007535387E-4 0.001647508732632582 0.0 0.12962632160307117 0.0 74-75 2.174377007535387E-4 0.0016642347096136232 0.0 0.1326286344711681 0.0 76-77 2.174377007535387E-4 0.0017478645945188304 0.0 0.13584002205152806 0.0 78-79 2.174377007535387E-4 0.0017813165484809133 0.0 0.1380729399784971 0.0 80-81 2.174377007535387E-4 0.001789679536971434 0.0 0.13896777974698282 0.0 82-83 2.258006892440594E-4 0.001798042525461955 0.0 0.1395364629643382 0.0 84-85 2.3416367773458014E-4 0.0018064055139524755 0.0 0.1397789896305633 0.0 86-87 2.4252666622510087E-4 0.001823131490933517 0.0 0.13987098250395902 0.0 88 2.508896547156216E-4 0.0019234873528197656 0.0 0.1398960714694306 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8780 0.0 53.372856 1 GTATCAA 15940 0.0 37.091938 1 CTTATAC 5685 0.0 32.690258 1 ATCAACG 19350 0.0 30.46821 3 TCAACGC 19605 0.0 30.114902 4 CAACGCA 20015 0.0 29.371681 5 TATCAAC 20340 0.0 29.19243 2 AACGCAG 20705 0.0 28.451542 6 TATACAC 8135 0.0 26.833813 3 ACGCAGA 23600 0.0 24.961199 7 CGCAGAG 24075 0.0 24.45121 8 TTATACA 8370 0.0 24.066483 2 TGGTATC 3680 0.0 21.528822 2 GTGGTAT 4050 0.0 20.91468 1 GCAGAGT 28390 0.0 20.734867 9 GAGTACT 14505 0.0 20.48055 12-13 ACATCTC 9285 0.0 20.422121 8 TACATGG 23455 0.0 20.087069 2 GTACATG 23615 0.0 20.022352 1 ACACATC 9585 0.0 19.871021 6 >>END_MODULE