##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140046_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6468830 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.746482748812383 18.0 18.0 30.0 18.0 33.0 2 31.07008516223181 32.0 31.0 33.0 27.0 33.0 3 31.820579610223177 33.0 31.0 33.0 29.0 33.0 4 32.593461414197 33.0 33.0 33.0 31.0 34.0 5 32.978190182768756 33.0 33.0 34.0 32.0 34.0 6 36.92270920707454 38.0 37.0 38.0 35.0 38.0 7 37.166629359559614 38.0 38.0 38.0 36.0 38.0 8 37.08858479817834 38.0 38.0 38.0 36.0 38.0 9 37.34115288236049 38.0 38.0 38.0 37.0 38.0 10-11 37.41211888394037 38.0 38.0 38.0 37.0 38.0 12-13 37.44642493310228 38.0 38.0 38.0 37.0 38.0 14-15 37.41754521296741 38.0 38.0 38.0 37.0 38.0 16-17 37.416109481931045 38.0 38.0 38.0 37.0 38.0 18-19 37.386537982911904 38.0 38.0 38.0 37.0 38.0 20-21 37.47689424778911 38.0 38.0 38.0 37.0 38.0 22-23 37.50339113456328 38.0 38.0 38.0 37.0 38.0 24-25 37.511298745556616 38.0 38.0 38.0 37.0 38.0 26-27 37.49080848488269 38.0 38.0 38.0 37.0 38.0 28-29 37.414454877238995 38.0 38.0 38.0 37.0 38.0 30-31 37.459714468383794 38.0 38.0 38.0 37.0 38.0 32-33 37.44551453809322 38.0 38.0 38.0 37.0 38.0 34-35 37.41090195157609 38.0 38.0 38.0 37.0 38.0 36-37 37.388295580952025 38.0 38.0 38.0 37.0 38.0 38-39 37.33871230811156 38.0 38.0 38.0 37.0 38.0 40-41 37.36302481399988 38.0 38.0 38.0 37.0 38.0 42-43 37.296849801428394 38.0 38.0 38.0 37.0 38.0 44-45 37.29120389380164 38.0 38.0 38.0 37.0 38.0 46-47 37.25335738316821 38.0 38.0 38.0 37.0 38.0 48-49 37.20750373154448 38.0 38.0 38.0 37.0 38.0 50-51 37.16677850349782 38.0 38.0 38.0 37.0 38.0 52-53 37.14468797498159 38.0 38.0 38.0 37.0 38.0 54-55 37.12449781204094 38.0 38.0 38.0 37.0 38.0 56-57 37.1247513965733 38.0 38.0 38.0 37.0 38.0 58-59 37.116065759265126 38.0 38.0 38.0 36.0 38.0 60-61 37.0955804779129 38.0 38.0 38.0 36.0 38.0 62-63 37.089103273367954 38.0 38.0 38.0 36.0 38.0 64-65 37.085532569184494 38.0 38.0 38.0 36.0 38.0 66-67 37.07755333766696 38.0 38.0 38.0 36.0 38.0 68-69 37.076402611119136 38.0 38.0 38.0 36.0 38.0 70-71 37.079073818635194 38.0 38.0 38.0 36.0 38.0 72-73 37.03186295104351 38.0 38.0 38.0 36.0 38.0 74-75 37.03711700665124 38.0 38.0 38.0 36.0 38.0 76-77 37.04395818568257 38.0 38.0 38.0 36.0 38.0 78-79 37.039878129467006 38.0 38.0 38.0 36.0 38.0 80-81 37.04214509214951 38.0 38.0 38.0 36.0 38.0 82-83 37.05197990141835 38.0 38.0 38.0 36.0 38.0 84-85 37.04309507805766 38.0 38.0 38.0 36.0 38.0 86-87 37.03198498811177 38.0 38.0 38.0 36.0 38.0 88-89 37.02071594762283 38.0 38.0 38.0 36.0 38.0 90-91 37.01524828053304 38.0 38.0 38.0 36.0 38.0 92-93 37.01353349027883 38.0 38.0 38.0 36.0 38.0 94-95 36.979574902800294 38.0 38.0 38.0 36.0 38.0 96-97 36.99713103013036 38.0 38.0 38.0 36.0 38.0 98-99 36.99494106486995 38.0 38.0 38.0 36.0 38.0 100 35.348779003525465 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 5.0 18 14.0 19 31.0 20 98.0 21 219.0 22 601.0 23 1356.0 24 3032.0 25 5659.0 26 9502.0 27 15694.0 28 24696.0 29 37428.0 30 50575.0 31 65399.0 32 83211.0 33 109919.0 34 161394.0 35 294063.0 36 1003179.0 37 4602754.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.87065512619747 19.379022172479413 19.57564196307524 24.174680738247876 2 13.579854718255755 20.854593039523497 43.11040206776826 22.455150174452488 3 17.135447986730213 26.984895259266363 32.107336257097494 23.772320496905934 4 11.533553981168156 19.256326105338985 38.017632245707496 31.19248766778536 5 12.381670453294614 37.97508060755899 35.98490563937533 13.658343299771069 6 28.17149294203507 38.32354453869355 18.956695308288673 14.5482672109827 7 24.766565205763637 33.44830518038038 22.466906689463165 19.31822292439282 8 23.873737251941154 36.52088137140144 21.882541938045037 17.72283943861237 9 24.590682437095136 16.73845723854257 20.769766832137442 37.90109349222485 10-11 23.47794732586882 26.867532459501952 28.902707290190033 20.751812924439193 12-13 24.726071020570952 24.26253279186499 28.705708760316778 22.305687427247275 14-15 22.01430552356454 25.722765940672428 26.193399733800394 26.069528801962644 16-17 21.56173527515795 29.46930897859427 26.7148541544607 22.254101591787077 18-19 21.503046145902736 27.35970028583221 29.007795845616595 22.129457722648453 20-21 22.051224060161534 26.2679869488823 29.102018359743 22.57877063121317 22-23 21.480261022011558 27.269974738807935 29.09913858407463 22.150625655105884 24-25 21.47688979534978 27.46632421595947 29.63027584191103 21.426510146779716 26-27 21.24275531547474 27.344770401072598 29.81025751687846 21.602216766574198 28-29 20.272755076420708 26.40683981546842 30.055764477036504 23.264640631074368 30-31 20.672770128444366 26.268079914056518 30.553738219324394 22.505411738174715 32-33 20.659538746660996 26.8019171668331 30.47725819892877 22.061285887577135 34-35 20.770162571040448 27.6551897516495 30.74773143054398 20.82691624676607 36-37 21.130017987874016 27.046743970923192 29.515542301250196 22.307695739952596 38-39 21.23746166051877 26.47158856551205 30.144154794199757 22.146794979769428 40-41 21.34423352572346 26.338623194868404 30.441530536694515 21.875612742713617 42-43 21.923966286183383 26.144730335873977 30.44013749245888 21.49116588548376 44-45 21.14527171482155 26.938468533999156 30.171574905209564 21.74468484596973 46-47 22.202429074523877 26.098084782591325 29.07635052012804 22.623135622756756 48-49 21.79629470542891 26.17368880259951 29.408546651490614 22.621469840480966 50-51 21.240862652864152 26.717147846589423 29.821341351128115 22.220648149418306 52-53 21.35732227802249 27.157822476678366 30.29405346111027 21.19080178418887 54-55 21.29698285262181 27.384242940632507 29.2181823407194 22.10059186602628 56-57 22.031135335290163 28.1812525933464 28.03205150179166 21.755560569571777 58-59 20.809176238513505 29.23576002341074 29.311891386839307 20.64317235123645 60-61 21.619617860455513 30.34743379510042 27.4289353395432 20.604013004900867 62-63 20.796852313828214 30.961323109178668 27.44993148261371 20.791893094379407 64-65 20.784593916450078 30.721359725131727 27.599491571480545 20.894554786937654 66-67 21.016908241209187 30.399514928471056 27.507256923944283 21.076319906375474 68-69 21.129213521460937 29.78298612231145 27.862958724157323 21.22484163207029 70-71 21.264851524412194 29.001080435113774 28.145630376305103 21.58843766416893 72-73 21.69244079702119 27.893556598966057 28.54196077963287 21.87204182437988 74-75 21.685029657673038 27.870828557130757 28.477045441327935 21.967096343868274 76-77 21.782257179973367 27.815419739489357 28.347856360952196 22.054466719585086 78-79 21.769998080420045 27.79608525165215 28.35314177890103 22.08077488902677 80-81 21.765010688199173 27.81327753816405 28.340330389987084 22.0813813836497 82-83 21.882087057112887 27.730590294079988 28.3941397719062 21.99318287690092 84-85 22.085740786833743 27.722608631088306 28.214913927927103 21.976736654150844 86-87 21.85888958541162 27.769195044182915 28.302284849103327 22.06963052130214 88-89 21.969790491342167 27.710444001958322 28.274462830182795 22.045302676516712 90-91 22.04015358484002 27.64776529453295 28.26629984344783 22.045781277179195 92-93 22.03793314218447 27.65883335928667 28.268460049614735 22.034773448914123 94-95 21.932835478793887 27.78817460854531 28.231877825535527 22.047112087125274 96-97 21.998738005420563 27.91850670558057 28.260124000343072 21.822631288655796 98-99 23.059101552805082 29.773703627768004 28.48574227344285 18.68145254598406 100 21.901227770854263 30.712986371973972 22.439506055282486 24.94627980188928 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2164.0 1 2218.0 2 2897.5 3 3705.5 4 4465.0 5 5520.5 6 6534.0 7 9352.0 8 12186.5 9 12910.0 10 13023.0 11 13497.5 12 14991.0 13 17918.5 14 23793.5 15 30270.0 16 33776.0 17 34162.0 18 31954.5 19 28497.0 20 25190.5 21 23080.0 22 23506.5 23 27186.5 24 33783.5 25 43235.5 26 55792.5 27 69769.5 28 83572.0 29 98377.5 30 113251.0 31 128115.5 32 144297.5 33 159866.0 34 175682.0 35 191350.5 36 206610.5 37 219778.0 38 228841.0 39 236217.0 40 243100.5 41 247531.5 42 262171.5 43 324781.0 44 352799.0 45 342585.0 46 334607.5 47 296260.0 48 266558.0 49 251568.0 50 242996.5 51 234587.0 52 223351.5 53 210556.5 54 197250.0 55 182266.0 56 166432.0 57 149378.5 58 132095.0 59 114758.0 60 96196.5 61 78057.0 62 60768.5 63 46265.5 64 35435.0 65 26522.5 66 19522.0 67 14766.0 68 10988.5 69 8047.5 70 5889.0 71 4169.5 72 3003.5 73 2181.0 74 1487.0 75 1005.5 76 678.5 77 400.5 78 251.5 79 161.0 80 109.5 81 84.5 82 59.5 83 35.5 84 21.0 85 13.5 86 12.0 87 10.0 88 7.5 89 5.0 90 3.5 91 3.0 92 3.5 93 3.5 94 1.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 3.0917492034881116E-4 3 0.0 4 0.0 5 0.007018270691918013 6 6.028910946801817E-4 7 0.0 8 3.0917492034881116E-5 9 2.1642244424416781E-4 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.0822684005534102E-4 26-27 7.731683371484035E-6 28-29 5.723843427821097E-4 30-31 2.5556225438434473E-4 32-33 0.0015451015931472647 34-35 3.038279517352939E-4 36-37 0.001291597057413133 38-39 7.80321028800467E-4 40-41 7.941519287289941E-4 42-43 1.3602005479687926E-4 44-45 1.1301139776452155E-4 46-47 5.055857439172326E-4 48-49 0.0013837151714567234 50-51 0.0016211578558815607 52-53 0.0016348285894799534 54-55 0.001208737770933711 56-57 0.002916230511138466 58-59 3.9579892141352186E-4 60-61 1.738111599105255E-5 62-63 0.0018497634460846364 64-65 0.0023551019090063555 66-67 0.0030329631488639876 68-69 7.833775757339488E-4 70-71 0.004674064265004802 72-73 0.0012802353322812303 74-75 0.004237396278767294 76-77 2.855302242111317E-4 78-79 0.001005578972049385 80-81 1.0071329181797159E-5 82-83 2.037333525657618E-5 84-85 8.959163514826077E-4 86-87 0.0 88-89 2.106630471946318E-5 90-91 0.0028350828068001914 92-93 5.284100755507785E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 62.0 20-21 255.0 22-23 482.0 24-25 828.0 26-27 2004.0 28-29 5103.0 30-31 15829.0 32-33 20140.0 34-35 26990.0 36-37 41490.0 38-39 48100.0 40-41 46273.0 42-43 52307.0 44-45 61522.0 46-47 62147.0 48-49 57784.0 50-51 51840.0 52-53 47873.0 54-55 50995.0 56-57 52499.0 58-59 53977.0 60-61 77601.0 62-63 71246.0 64-65 72760.0 66-67 92245.0 68-69 102703.0 70-71 138905.0 72-73 68713.0 74-75 54110.0 76-77 55730.0 78-79 57268.0 80-81 57032.0 82-83 53573.0 84-85 53160.0 86-87 54710.0 88-89 55324.0 90-91 55203.0 92-93 54583.0 94-95 62204.0 96-97 183104.0 98-99 401455.0 100-101 3948701.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.33804349864607 #Duplication Level Percentage of deduplicated Percentage of total 1 89.72488535610627 76.56946169430428 2 7.128693523195485 12.166975159419456 3 1.8288483070240942 4.682110091317422 4 0.6464158240769655 2.206554468531729 5 0.2814170155413484 1.2007788756763373 6 0.13972534521113467 0.7154332552494689 7 0.0830544764439534 0.49613945664719605 8 0.04434326142363401 0.3027333737793531 9 0.03179299489509832 0.244183678317912 >10 0.08852044254065967 1.128470020774557 >50 0.0013847752981513476 0.08307598165798463 >100 8.067585881806631E-4 0.12667305509144328 >500 8.393974334759799E-5 0.05226787206498968 >1k 2.7979911657642807E-5 0.025143017167889904 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.5458746017440558E-5 0.0 2 0.0 0.0 0.0 3.0917492034881116E-5 3.0917492034881116E-5 3 0.0 0.0 0.0 3.0917492034881116E-5 3.0917492034881116E-5 4 0.0 0.0 0.0 3.0917492034881116E-5 3.0917492034881116E-5 5 0.0 0.0 0.0 3.0917492034881116E-5 3.0917492034881116E-5 6 0.0 0.0 0.0 3.0917492034881116E-5 3.0917492034881116E-5 7 0.0 0.0 0.0 6.183498406976223E-5 3.0917492034881116E-5 8 1.5458746017440558E-5 0.0 0.0 9.275247610464335E-5 3.0917492034881116E-5 9 1.5458746017440558E-5 6.183498406976223E-5 0.0 1.2366996813952447E-4 3.0917492034881116E-5 10-11 1.5458746017440558E-5 6.183498406976223E-5 0.0 1.855049522092867E-4 3.0917492034881116E-5 12-13 2.3188119026160837E-5 6.183498406976223E-5 0.0 1.855049522092867E-4 3.0917492034881116E-5 14-15 1.0048184911336362E-4 8.502310309592306E-5 0.0 2.0096369822672727E-4 3.8646865043601396E-5 16-17 1.855049522092867E-4 9.275247610464335E-5 0.0 2.241518172528881E-4 4.6376238052321675E-5 18-19 2.1642244424416781E-4 9.275247610464335E-5 0.0 2.3188119026160836E-4 4.6376238052321675E-5 20-21 2.1642244424416781E-4 9.275247610464335E-5 0.0 2.3188119026160836E-4 7.729373008720279E-5 22-23 2.859868013226503E-4 1.0821122212208391E-4 0.0 2.7825742831393E-4 1.0048184911336364E-4 24-25 2.937161743313706E-4 1.3912871415696504E-4 0.0 3.246336663662517E-4 1.0821122212208391E-4 26-27 3.091749203488111E-4 1.5458746017440558E-4 0.0 4.019273964534545E-4 1.0821122212208391E-4 28-29 4.0965676946217475E-4 1.5458746017440558E-4 0.0 7.49749181845867E-4 1.0821122212208391E-4 30-31 4.4830363450577615E-4 2.0096369822672724E-4 0.0 0.002164224442441678 1.0821122212208391E-4 32-33 4.4830363450577615E-4 2.0096369822672724E-4 0.0 0.005093656812746664 1.0821122212208391E-4 34-35 4.4830363450577615E-4 2.0869307123544753E-4 0.0 0.008510039682601027 1.2366996813952447E-4 36-37 4.4830363450577615E-4 2.1642244424416781E-4 0.0 0.013704178344461054 1.3139934114824472E-4 38-39 4.4830363450577615E-4 2.1642244424416781E-4 0.0 0.02524413224648043 1.39128714156965E-4 40-41 4.4830363450577615E-4 2.3188119026160836E-4 0.0 0.037479729719284635 1.39128714156965E-4 42-43 4.4830363450577615E-4 2.550693092877692E-4 0.0 0.046268026830199586 1.39128714156965E-4 44-45 4.4830363450577615E-4 3.091749203488111E-4 0.0 0.05626983550348363 1.39128714156965E-4 46-47 4.4830363450577615E-4 3.4009241238369225E-4 0.0 0.06724554517586642 1.39128714156965E-4 48-49 4.4830363450577615E-4 3.4009241238369225E-4 0.0 0.07744058817436847 1.39128714156965E-4 50-51 4.4830363450577615E-4 4.0965676946217475E-4 0.0 0.08723370377641707 1.39128714156965E-4 52-53 4.4830363450577615E-4 4.3284488848833563E-4 0.0 0.10841991519331935 1.468580871656853E-4 54-55 4.4830363450577615E-4 4.4830363450577615E-4 0.0 0.13276744017078823 1.5458746017440558E-4 56-57 4.4830363450577615E-4 4.4830363450577615E-4 0.0 0.16421052957026233 1.5458746017440558E-4 58-59 4.4830363450577615E-4 4.4830363450577615E-4 0.0 0.18967881363399564 1.5458746017440558E-4 60-61 4.4830363450577615E-4 4.4830363450577615E-4 0.0 0.200499935846204 1.5458746017440558E-4 62-63 4.4830363450577615E-4 4.637623805232167E-4 0.0 0.21391812738934243 1.5458746017440558E-4 64-65 4.4830363450577615E-4 5.410561106104195E-4 0.0 0.220534470684807 1.5458746017440558E-4 66-67 4.4830363450577615E-4 5.410561106104195E-4 0.0 0.22625420671126 1.5458746017440558E-4 68-69 4.4830363450577615E-4 5.410561106104195E-4 0.0 0.23209761270585255 1.5458746017440558E-4 70-71 4.4830363450577615E-4 5.410561106104195E-4 0.0 0.23733039823275615 1.6231683318312587E-4 72-73 4.4830363450577615E-4 5.410561106104195E-4 0.0 0.24158155338755233 2.0096369822672724E-4 74-75 4.4830363450577615E-4 5.565148566278601E-4 0.0 0.24498247751138924 2.0096369822672724E-4 76-77 4.4830363450577615E-4 5.951617216714614E-4 0.0 0.24840658975425234 2.0096369822672724E-4 78-79 4.4830363450577615E-4 6.028910946801817E-4 0.0 0.25035439175244983 2.0096369822672724E-4 80-81 4.4830363450577615E-4 6.028910946801817E-4 0.0 0.25094182410111254 2.0869307123544753E-4 82-83 4.4830363450577615E-4 6.028910946801817E-4 0.0 0.2515060683307492 2.3188119026160836E-4 84-85 4.4830363450577615E-4 6.028910946801817E-4 0.0 0.2517224907749933 2.3188119026160836E-4 86-87 4.4830363450577615E-4 6.183498406976223E-4 0.0 0.25179978450508056 2.3188119026160836E-4 88 4.4830363450577615E-4 7.111023168022657E-4 0.0 0.25180751387808925 2.3188119026160836E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 14830 0.0 58.134552 1 GGTATCA 9340 0.0 51.66265 1 TATACAC 18370 0.0 49.20003 3 TTATACA 19015 0.0 46.87372 2 GTATCAA 18635 0.0 36.783367 1 TACACAT 25940 0.0 34.536907 5 ATACACA 28680 0.0 32.167213 4 ACACATC 27800 0.0 31.683626 6 ATCAACG 24665 0.0 30.797857 3 TATCAAC 25225 0.0 30.394962 2 TCAACGC 25085 0.0 30.315432 4 CAACGCA 25495 0.0 29.844254 5 AACGCAG 26225 0.0 29.026705 6 CACATCT 30500 0.0 28.906168 7 CATCTCC 32465 0.0 27.130903 9 ACGCAGA 29665 0.0 25.590494 7 TGGTATC 4110 0.0 25.447603 2 CGCAGAG 30200 0.0 25.137156 8 GTGGTAT 3905 0.0 24.969498 1 GCAGAGT 33930 0.0 22.336931 9 >>END_MODULE