##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140045_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6916870 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.48695233537713 18.0 18.0 30.0 18.0 33.0 2 30.979460507426047 32.0 29.0 33.0 27.0 33.0 3 31.81015415932351 33.0 31.0 33.0 29.0 33.0 4 32.616396289072945 33.0 33.0 33.0 31.0 34.0 5 33.00802212561462 33.0 33.0 34.0 32.0 34.0 6 36.985615169867295 38.0 37.0 38.0 35.0 38.0 7 37.20731327898312 38.0 38.0 38.0 36.0 38.0 8 37.13536975539514 38.0 38.0 38.0 36.0 38.0 9 37.374027558707915 38.0 38.0 38.0 37.0 38.0 10-11 37.44120570431423 38.0 38.0 38.0 37.0 38.0 12-13 37.48059577525673 38.0 38.0 38.0 37.0 38.0 14-15 37.45477795592515 38.0 38.0 38.0 37.0 38.0 16-17 37.460876740491 38.0 38.0 38.0 37.0 38.0 18-19 37.41672830340892 38.0 38.0 38.0 37.0 38.0 20-21 37.50168758143466 38.0 38.0 38.0 37.0 38.0 22-23 37.525136446037855 38.0 38.0 38.0 37.5 38.0 24-25 37.53414132902611 38.0 38.0 38.0 38.0 38.0 26-27 37.51639259705801 38.0 38.0 38.0 37.5 38.0 28-29 37.45208601026221 38.0 38.0 38.0 37.0 38.0 30-31 37.489713187442405 38.0 38.0 38.0 37.0 38.0 32-33 37.48251297533622 38.0 38.0 38.0 37.0 38.0 34-35 37.461078260150984 38.0 38.0 38.0 37.0 38.0 36-37 37.441758776908 38.0 38.0 38.0 37.0 38.0 38-39 37.41704715851776 38.0 38.0 38.0 37.0 38.0 40-41 37.41548392159635 38.0 38.0 38.0 37.0 38.0 42-43 37.35509189755177 38.0 38.0 38.0 37.0 38.0 44-45 37.36663280667601 38.0 38.0 38.0 37.0 38.0 46-47 37.351529883010755 38.0 38.0 38.0 37.0 38.0 48-49 37.32103980391143 38.0 38.0 38.0 37.0 38.0 50-51 37.289579707408805 38.0 38.0 38.0 37.0 38.0 52-53 37.26803489920889 38.0 38.0 38.0 37.0 38.0 54-55 37.25431007731538 38.0 38.0 38.0 37.0 38.0 56-57 37.255562195749874 38.0 38.0 38.0 37.0 38.0 58-59 37.24881258580447 38.0 38.0 38.0 37.0 38.0 60-61 37.24166021261884 38.0 38.0 38.0 37.0 38.0 62-63 37.241530648964506 38.0 38.0 38.0 37.0 38.0 64-65 37.23847163833578 38.0 38.0 38.0 37.0 38.0 66-67 37.23604417789963 38.0 38.0 38.0 37.0 38.0 68-69 37.23566122610934 38.0 38.0 38.0 37.0 38.0 70-71 37.23783727352397 38.0 38.0 38.0 37.0 38.0 72-73 37.20857770707981 38.0 38.0 38.0 37.0 38.0 74-75 37.20404929762608 38.0 38.0 38.0 37.0 38.0 76-77 37.198964347366925 38.0 38.0 38.0 37.0 38.0 78-79 37.184534750698674 38.0 38.0 38.0 36.0 38.0 80-81 37.17609364272677 38.0 38.0 38.0 36.0 38.0 82-83 37.17475280833369 38.0 38.0 38.0 36.0 38.0 84-85 37.15620923766012 38.0 38.0 38.0 36.0 38.0 86-87 37.13671417898435 38.0 38.0 38.0 36.0 38.0 88-89 37.11947566874427 38.0 38.0 38.0 36.0 38.0 90-91 37.10835730216626 38.0 38.0 38.0 36.0 38.0 92-93 37.10064542959644 38.0 38.0 38.0 36.0 38.0 94-95 37.06009945763799 38.0 38.0 38.0 36.0 38.0 96-97 37.07139685126179 38.0 38.0 38.0 36.0 38.0 98-99 37.060499168322934 38.0 38.0 38.0 36.0 38.0 100 35.44012922805392 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 9.0 19 22.0 20 72.0 21 181.0 22 506.0 23 1139.0 24 2625.0 25 5018.0 26 8465.0 27 13835.0 28 21642.0 29 32205.0 30 44063.0 31 59144.0 32 77391.0 33 105298.0 34 157224.0 35 288772.0 36 983714.0 37 5115543.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.8302281234142 18.866510430295786 20.340630950126286 23.96263049616373 2 13.908430927061504 21.086216206643048 42.41686431188741 22.588488554408038 3 17.631168433120763 25.994055114524343 31.167522304163587 25.207254148191303 4 12.034388386654657 18.481928964979826 39.385299998409685 30.098382649955834 5 12.99402884988382 37.57325137574726 36.140155106187116 13.292564668181805 6 29.237127388512928 38.40639446592498 19.102089157270296 13.25438898829179 7 25.805169101052932 32.732666654136914 23.512672639503126 17.949491605307024 8 23.601907163486832 37.15017589605933 21.777931604603182 17.46998533585066 9 24.911404886032102 17.121106976286928 21.703113840673367 36.2643742970076 10-11 23.552264246689617 27.027745208454114 29.56290923495743 19.85708130989884 12-13 24.43512022056219 24.48177427073228 29.466622908916897 21.616482599788633 14-15 21.627882264665953 25.99882605860743 27.01699612686085 25.356295549865767 16-17 21.333211409206765 29.17719286324595 27.74719634748087 21.74239938006642 18-19 21.3580420045483 28.23503983738309 29.4003646157872 21.00655354228141 20-21 22.03389279161926 27.400752659101524 29.303493951691607 21.261860597587617 22-23 21.69898395576573 27.560322746864514 29.125088120974556 21.615605176395203 24-25 21.584562196040512 27.633103468816984 29.334925991356243 21.447408343786268 26-27 21.65495131811408 27.80585634397258 29.22667131694573 21.312521020967612 28-29 21.467563453626827 27.64273920184765 29.415900043217487 21.473797301308036 30-31 21.91068096643588 27.599695727005457 29.19428453143841 21.295338775120253 32-33 21.674829555317498 27.516804461486455 29.225311823893335 21.583054159302716 34-35 21.51455257247685 27.758133164336922 29.467477409461768 21.25983685372446 36-37 21.707081216113572 27.62029446912817 29.20366763577165 21.468956678986608 38-39 21.41924467989089 27.568702274125172 29.40660647194555 21.605446574038385 40-41 21.69818123583238 27.476174212998437 29.337194240403182 21.488450310766005 42-43 21.76486832734302 27.47475956440245 29.18300691399728 21.57736519425725 44-45 21.638824506098782 27.704573074966603 29.08219761992029 21.57440479901432 46-47 21.849414397181715 27.510051009796516 28.746512584794342 21.894022008227427 48-49 21.72937430875493 27.544875715226556 28.87945216802132 21.846297807997193 50-51 21.612959353801305 27.723569063585668 28.86285845399809 21.80061312861494 52-53 21.764257860313243 27.69047108696349 28.933448359587636 21.611822693135625 54-55 21.70117320847863 27.651772005075863 28.764235584860593 21.882819201584912 56-57 21.894024806226 27.872083437122598 28.48584194748444 21.748049809166965 58-59 21.612876831741744 28.124137529522645 28.797065122126607 21.465920516609 60-61 21.836848661747858 28.33551685988293 28.420373488099816 21.407260990269396 62-63 21.63188391155574 28.553120936758987 28.355311933823778 21.459683217861492 64-65 21.613780414255675 28.457247830390937 28.373382282167963 21.555589473185428 66-67 21.6584154389061 28.42448727534438 28.301011686419507 21.61608559933001 68-69 21.712163101314022 28.311368332976 28.326612199086696 21.64985636662328 70-71 21.70673225420118 28.033755593771776 28.43745038921426 21.822061762812783 72-73 21.845432812123462 27.80061378251288 28.48690947968303 21.867043925680623 74-75 21.761529181983345 27.86611399441698 28.422432063129982 21.949924760469692 76-77 21.84257771380907 27.863826280352633 28.33230332952048 21.961292676317814 78-79 21.862731929085925 27.87735891839923 28.326085200722666 21.93382395179218 80-81 21.813407221699286 27.886389310841203 28.317423192080675 21.982780275378833 82-83 21.935051018310023 27.857451126587385 28.34896131312191 21.85853654198068 84-85 22.045779612780915 27.835666064628484 28.249555093515916 21.868999229074685 86-87 21.87842793026086 27.824470944971925 28.313942254752135 21.98315887001508 88-89 21.938762698999835 27.802201318608322 28.306920586079166 21.95211539631268 90-91 21.973525887873606 27.870551426916744 28.260497818676118 21.895424866533535 92-93 21.99332301477682 27.873484317413606 28.241361679287238 21.89183098852234 94-95 21.973423373871032 27.949048370597033 28.176656661330984 21.900871594200947 96-97 22.004387306884546 28.076332262360303 28.25529745030653 21.663982980448623 98-99 23.105482345580544 29.91370755061239 28.54211889945214 18.438691204354928 100 21.88261857164692 30.87289252621432 22.53286639783069 24.71162250430807 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 878.0 1 1084.0 2 1741.0 3 2414.5 4 3019.5 5 3635.0 6 4156.0 7 5855.0 8 7748.5 9 8510.5 10 8996.5 11 9567.0 12 10689.5 13 12699.5 14 16383.0 15 20398.0 16 22605.5 17 22968.5 18 21845.5 19 20188.0 20 19160.5 21 19332.5 22 21645.0 23 26647.5 24 34246.5 25 44673.5 26 58434.0 27 74246.5 28 89740.0 29 107048.5 30 124881.0 31 141491.0 32 159522.5 33 176941.5 34 194039.5 35 210497.5 36 227009.5 37 242683.5 38 252988.0 39 261661.0 40 272406.5 41 280855.5 42 288463.0 43 307356.0 44 314465.5 45 308434.5 46 303781.5 47 294247.5 48 286719.5 49 278244.5 50 267961.0 51 255468.0 52 240114.5 53 223831.0 54 206765.5 55 188243.5 56 169503.5 57 150908.5 58 132743.5 59 113938.0 60 94260.5 61 75681.0 62 58941.0 63 45385.0 64 34434.5 65 25491.0 66 18642.5 67 14007.0 68 10635.0 69 7792.5 70 5653.0 71 4076.0 72 2942.0 73 2037.5 74 1344.0 75 872.5 76 524.0 77 295.5 78 195.0 79 129.0 80 88.5 81 59.0 82 33.5 83 18.5 84 10.0 85 6.0 86 5.0 87 4.0 88 2.0 89 1.0 90 0.5 91 0.0 92 0.0 93 0.0 94 0.5 95 1.0 96 1.0 97 1.5 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.1686109468589118E-4 3 0.0 4 0.0 5 0.006462460621639556 6 2.024036883734984E-4 7 0.0 8 1.4457406312392744E-5 9 1.4457406312392743E-4 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 7.22927224868176E-5 26-27 2.1689729717771067E-5 28-29 6.147027792737555E-4 30-31 2.2436826040267156E-4 32-33 0.0015371798116084628 34-35 2.980057455507742E-4 36-37 0.001400498416962662 38-39 6.745337340552506E-4 40-41 7.963002122582454E-4 42-43 1.3348039907079844E-4 44-45 9.706251497935929E-5 46-47 4.740664934693578E-4 48-49 0.0016606667812198153 50-51 0.001825481661738248 52-53 0.0017919655647283342 54-55 0.0013865322788974821 56-57 0.003106751008972031 58-59 4.7204546741942184E-4 60-61 1.585808535979181E-5 62-63 0.0020780343457516668 64-65 0.0024658619146337947 66-67 0.0033755362120611084 68-69 8.710704757647238E-4 70-71 0.005072912531779389 72-73 0.0010586980870333851 74-75 0.0040780638065224094 76-77 2.823483028129078E-4 78-79 0.0010624818816605953 80-81 0.0 82-83 0.0 84-85 9.866466706274753E-4 86-87 0.0 88-89 1.8129931964710813E-5 90-91 0.00308657579494439 92-93 5.18238717596083E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 32.0 20-21 151.0 22-23 285.0 24-25 483.0 26-27 1325.0 28-29 3587.0 30-31 11748.0 32-33 15480.0 34-35 21371.0 36-37 33150.0 38-39 38468.0 40-41 38130.0 42-43 43514.0 44-45 51279.0 46-47 51813.0 48-49 48417.0 50-51 45310.0 52-53 45389.0 54-55 49033.0 56-57 50260.0 58-59 49297.0 60-61 50182.0 62-63 50601.0 64-65 54481.0 66-67 61324.0 68-69 63874.0 70-71 72620.0 72-73 54971.0 74-75 52853.0 76-77 55092.0 78-79 55879.0 80-81 55161.0 82-83 53004.0 84-85 53113.0 86-87 55491.0 88-89 56274.0 90-91 56625.0 92-93 56256.0 94-95 66607.0 96-97 208341.0 98-99 459978.0 100-101 4625621.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.15837674375005 #Duplication Level Percentage of deduplicated Percentage of total 1 90.62528694697146 78.98752902234591 2 6.833719853258664 11.912318590631259 3 1.5159647353033883 3.963870765894361 4 0.5129763106815333 1.7884073018800022 5 0.21090213829886806 0.919094401295761 6 0.1105135642924276 0.5779309723136429 7 0.06120524820088006 0.3734185056970924 8 0.036634308999957545 0.2554389524452202 9 0.021749366832095024 0.17060755574607836 >10 0.06939294032077076 0.8876824826163076 >50 0.0012568204270875748 0.07668540028083175 >100 3.5007873874447204E-4 0.05596788866567917 >500 4.768767414010598E-5 0.0310481601878791 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.8914812624785487E-5 0.0 1.4457406312392744E-5 0.0 3 0.0 2.8914812624785487E-5 0.0 1.4457406312392744E-5 0.0 4 0.0 8.674443787435647E-5 0.0 1.4457406312392744E-5 0.0 5 0.0 1.0120184418674921E-4 0.0 1.4457406312392744E-5 0.0 6 1.4457406312392744E-5 1.0120184418674921E-4 0.0 1.4457406312392744E-5 0.0 7 1.4457406312392744E-5 1.0120184418674921E-4 0.0 1.4457406312392744E-5 0.0 8 1.4457406312392744E-5 1.0120184418674921E-4 0.0 1.4457406312392744E-5 0.0 9 1.4457406312392744E-5 1.1565925049914195E-4 0.0 1.4457406312392744E-5 0.0 10-11 2.8914812624785487E-5 1.1565925049914195E-4 0.0 7.228703156196372E-5 0.0 12-13 2.8914812624785487E-5 1.1565925049914195E-4 0.0 8.674443787435647E-5 0.0 14-15 2.8914812624785487E-5 1.6626017259251656E-4 0.0 1.0843054734294559E-4 0.0 16-17 8.674443787435647E-5 1.7348887574871293E-4 0.0 1.1565925049914195E-4 0.0 18-19 8.674443787435647E-5 1.807175789049093E-4 0.0 1.3011665681153468E-4 0.0 20-21 8.674443787435647E-5 1.8794628206110568E-4 0.0 1.3734535996773106E-4 0.0 22-23 8.674443787435647E-5 1.8794628206110568E-4 0.0 1.7348887574871293E-4 0.0 24-25 8.674443787435647E-5 2.096323915296948E-4 0.0 2.096323915296948E-4 0.0 26-27 8.674443787435647E-5 2.1686109468589115E-4 0.0 2.457759073106767E-4 0.0 28-29 8.674443787435647E-5 2.2408979784208752E-4 0.0 4.264934862155859E-4 0.0 30-31 8.674443787435647E-5 2.746907199354621E-4 0.0 0.0010409332544922775 0.0 32-33 8.674443787435647E-5 2.8914812624785487E-4 0.0 0.0025155886983563376 0.0 34-35 8.674443787435647E-5 3.975786735908005E-4 0.0 0.004236020049531074 0.0 36-37 8.674443787435647E-5 5.204666272461387E-4 0.0 0.007264846671977354 0.0 38-39 8.674443787435647E-5 5.566101430271207E-4 0.0 0.011464723205727447 0.0 40-41 1.3011665681153468E-4 6.072110651204952E-4 0.0 0.01595374786572539 0.0 42-43 1.3011665681153468E-4 6.433545809014772E-4 0.0 0.02014639569631929 0.0 44-45 1.3734535996773106E-4 6.867267998386553E-4 0.0 0.024808909232065947 0.0 46-47 1.4457406312392743E-4 7.228703156196372E-4 0.0 0.030309952333931387 0.0 48-49 1.4457406312392743E-4 7.300990187758336E-4 0.0 0.03618688799991904 0.0 50-51 1.5903146943632018E-4 8.602156755873683E-4 0.0 0.04136263945975564 0.0 52-53 1.5903146943632018E-4 8.746730818997609E-4 0.0 0.046993799218432615 0.0 54-55 1.5903146943632018E-4 8.819017850559573E-4 0.0 0.05281290525917069 0.0 56-57 1.5903146943632018E-4 8.819017850559573E-4 0.0 0.058574181674659206 0.0 58-59 1.5903146943632018E-4 8.963591913683501E-4 0.0 0.0643499154964601 0.0 60-61 1.5903146943632018E-4 9.397314103055283E-4 0.0 0.06940277900264137 0.0 62-63 1.5903146943632018E-4 9.686462229303138E-4 0.0 0.07436889807094828 0.0 64-65 1.5903146943632018E-4 0.0010264758481798848 0.0 0.07946513379606672 0.0 66-67 1.5903146943632018E-4 0.0010264758481798848 0.0 0.08499509171055694 0.0 68-69 1.5903146943632018E-4 0.0010626193639608665 0.0 0.09013469965461257 0.0 70-71 1.5903146943632018E-4 0.001069848067117063 0.0 0.09489841503454596 0.0 72-73 1.7348887574871293E-4 0.001069848067117063 0.0 0.09855613883158135 0.0 74-75 1.7348887574871293E-4 0.0010915341765856523 0.0 0.10120184418674921 0.0 76-77 1.7348887574871293E-4 0.001163821208147616 0.0 0.10432464395022605 0.0 78-79 1.7348887574871293E-4 0.001185507317616205 0.0 0.10628362250555526 0.0 80-81 1.7348887574871293E-4 0.001185507317616205 0.0 0.1069848067117063 0.0 82-83 1.7348887574871293E-4 0.001185507317616205 0.0 0.10741852890107809 0.0 84-85 1.7348887574871293E-4 0.001185507317616205 0.0 0.10761370388629539 0.0 86-87 1.7348887574871293E-4 0.001185507317616205 0.0 0.10774382054310692 0.0 88 1.7348887574871293E-4 0.0012288795365533833 0.0 0.10775104924626312 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6955 0.0 45.751804 1 CTTATAC 6175 0.0 36.857513 1 GTATCAA 12555 0.0 33.553623 1 ATCAACG 15820 0.0 30.509895 3 TCAACGC 15905 0.0 30.400839 4 CAACGCA 16400 0.0 29.430882 5 TATCAAC 16840 0.0 28.942823 2 AACGCAG 17000 0.0 28.364836 6 TATACAC 9555 0.0 27.324596 3 TTATACA 9440 0.0 25.88376 2 ACGCAGA 19765 0.0 24.353323 7 CGCAGAG 19890 0.0 24.200274 8 ACACATC 10380 0.0 22.58628 6 ACATCTC 10570 0.0 22.424023 8 TACACAT 12740 0.0 20.661978 5 GCAGAGT 23820 0.0 20.17148 9 TATGCCG 6780 0.0 19.728144 42-43 TACATGG 15790 0.0 19.472336 2 CGTATGC 6875 0.0 19.468964 40-41 CTCGTAT 6775 0.0 19.431042 38-39 >>END_MODULE