##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140044_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7007224 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.693115561882994 18.0 18.0 30.0 18.0 33.0 2 31.119374377071434 32.0 31.0 33.0 27.0 33.0 3 31.88102934914026 33.0 31.0 33.0 29.0 33.0 4 32.64908528684112 33.0 33.0 33.0 31.0 34.0 5 33.03085016263216 33.0 33.0 34.0 33.0 34.0 6 37.05601604858072 38.0 38.0 38.0 36.0 38.0 7 37.29232403588068 38.0 38.0 38.0 36.0 38.0 8 37.23260295375173 38.0 38.0 38.0 36.0 38.0 9 37.452048771382216 38.0 38.0 38.0 37.0 38.0 10-11 37.50939252120383 38.0 38.0 38.0 37.0 38.0 12-13 37.54278620178262 38.0 38.0 38.0 37.5 38.0 14-15 37.512761187597256 38.0 38.0 38.0 37.5 38.0 16-17 37.52028535123181 38.0 38.0 38.0 37.0 38.0 18-19 37.47510897325389 38.0 38.0 38.0 37.0 38.0 20-21 37.55753820496018 38.0 38.0 38.0 38.0 38.0 22-23 37.57628534650969 38.0 38.0 38.0 38.0 38.0 24-25 37.58611657853842 38.0 38.0 38.0 38.0 38.0 26-27 37.56716969173638 38.0 38.0 38.0 38.0 38.0 28-29 37.504046500649295 38.0 38.0 38.0 38.0 38.0 30-31 37.539768385960905 38.0 38.0 38.0 38.0 38.0 32-33 37.53010660380559 38.0 38.0 38.0 38.0 38.0 34-35 37.50881921748413 38.0 38.0 38.0 38.0 38.0 36-37 37.489814165146655 38.0 38.0 38.0 38.0 38.0 38-39 37.46841542151447 38.0 38.0 38.0 38.0 38.0 40-41 37.44960457367793 38.0 38.0 38.0 38.0 38.0 42-43 37.38307173554594 38.0 38.0 38.0 37.0 38.0 44-45 37.3897025946496 38.0 38.0 38.0 37.0 38.0 46-47 37.36664150250222 38.0 38.0 38.0 37.0 38.0 48-49 37.329854359732664 38.0 38.0 38.0 37.0 38.0 50-51 37.29671007982625 38.0 38.0 38.0 37.0 38.0 52-53 37.276548528851436 38.0 38.0 38.0 37.0 38.0 54-55 37.26577702299572 38.0 38.0 38.0 37.0 38.0 56-57 37.26916697413222 38.0 38.0 38.0 37.0 38.0 58-59 37.265939506475675 38.0 38.0 38.0 37.0 38.0 60-61 37.264160514333 38.0 38.0 38.0 37.0 38.0 62-63 37.2682952377754 38.0 38.0 38.0 37.0 38.0 64-65 37.27131801785734 38.0 38.0 38.0 37.0 38.0 66-67 37.27496551991871 38.0 38.0 38.0 37.0 38.0 68-69 37.27956446003138 38.0 38.0 38.0 37.0 38.0 70-71 37.288474937604484 38.0 38.0 38.0 37.0 38.0 72-73 37.26377519518481 38.0 38.0 38.0 37.0 38.0 74-75 37.262016085161534 38.0 38.0 38.0 37.0 38.0 76-77 37.260456816394054 38.0 38.0 38.0 37.0 38.0 78-79 37.24736794441749 38.0 38.0 38.0 37.0 38.0 80-81 37.23981108824172 38.0 38.0 38.0 37.0 38.0 82-83 37.24252455560568 38.0 38.0 38.0 37.0 38.0 84-85 37.225618815563614 38.0 38.0 38.0 37.0 38.0 86-87 37.21251163646634 38.0 38.0 38.0 36.5 38.0 88-89 37.1963153625477 38.0 38.0 38.0 36.0 38.0 90-91 37.188130430353894 38.0 38.0 38.0 36.0 38.0 92-93 37.184311517678836 38.0 38.0 38.0 36.0 38.0 94-95 37.14775728471159 38.0 38.0 38.0 36.0 38.0 96-97 37.161042330131956 38.0 38.0 38.0 36.0 38.0 98-99 37.14960401693583 38.0 38.0 38.0 36.0 38.0 100 35.60977643914597 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 24.0 20 57.0 21 148.0 22 457.0 23 1121.0 24 2441.0 25 4438.0 26 7982.0 27 12777.0 28 20532.0 29 30767.0 30 43084.0 31 57054.0 32 74006.0 33 98141.0 34 144309.0 35 265248.0 36 979794.0 37 5264841.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.93311017315844 18.993313186505812 19.343680179197925 23.72989646113782 2 14.36678185285262 21.27918031808969 41.59542333991608 22.758614489141607 3 17.627251533560223 25.76435404376969 31.492171507575613 25.116222915094475 4 12.313463933791756 18.350448051896155 39.04342147475234 30.292666539559747 5 13.071788805126932 37.462702095875684 35.95591458021759 13.50959451877979 6 29.556624235036168 38.15854106508254 18.851126428068067 13.433708271813224 7 25.75863137813205 32.98966894736061 23.439781573987073 17.811918100520263 8 23.875767030072687 36.53031115611864 21.795199295812235 17.79872251799643 9 25.18819193036656 16.654893075815647 21.818704396958104 36.33821059685969 10-11 23.658356005174088 26.88868658972512 29.508861141016755 19.94409626408404 12-13 24.50331258141598 24.6469429263286 29.390997062460112 21.45874742979531 14-15 21.759716954939428 26.11261792919835 27.177312098008578 24.950353017853647 16-17 21.237647033975225 29.079211682115485 27.98195833328576 21.70118295062353 18-19 21.233765325612538 28.082397537170213 29.851778678689307 20.832058458527943 20-21 22.01911520721675 27.286354275461893 29.71443356340569 20.980096953915673 22-23 21.759839141980194 27.286436438697176 29.488458167345744 21.46526625197688 24-25 21.57680153560682 27.328240810187026 29.690696370974244 21.40426128323191 26-27 21.541419251125536 27.53855856970782 29.60042314275708 21.31959903640956 28-29 21.44604939053468 27.496206750331524 29.64173916222285 21.416004696910946 30-31 21.714515373453963 27.364305546490524 29.612877956076705 21.308301123978808 32-33 21.43424580094908 27.354845591428433 29.626941711138787 21.583966896483698 34-35 21.53517269118784 27.40032314501915 29.538915733694253 21.52558843009875 36-37 21.55053700328923 27.383098804076933 29.645823701986156 21.42054049064768 38-39 21.403374416935655 27.444841513809777 29.716806320899416 21.43497774835516 40-41 21.70495906729252 27.270352571242228 29.544593307482693 21.480095053982556 42-43 21.713142253991535 27.35804612611568 29.366689632791488 21.5621219871013 44-45 21.724141071476026 27.518984200809264 29.197105138924844 21.559769588789862 46-47 21.80998246295123 27.410197500393423 28.92636838545235 21.85345165120299 48-49 21.71058898225718 27.493019476882548 29.019750296846546 21.776641244013728 50-51 21.658733632228508 27.651725676276673 28.930355025112625 21.7591856663822 52-53 21.842018151747716 27.600265284152176 28.861932073262054 21.695784490838054 54-55 21.8244472666899 27.56676755598198 28.746000336236815 21.8627848410913 56-57 21.87718254461032 27.708625360933066 28.59260585722008 21.821586237236538 58-59 21.7063210007405 27.83804635074059 28.839563381970635 21.616069266548273 60-61 21.888144644948532 27.920465089678316 28.601561629698214 21.58982863567494 62-63 21.788889735861744 27.992395812566212 28.54649522633069 21.672219225241353 64-65 21.74708372676841 27.983290876073998 28.54871034737952 21.72091504977807 66-67 21.826289720667972 27.987475064097122 28.420914712972994 21.765320502261908 68-69 21.786834106468895 27.888820999344382 28.51737680074819 21.806968093438535 70-71 21.768804062205803 27.677013350084884 28.593125175548074 21.96105741216124 72-73 21.907679641343332 27.55340753839855 28.590645277782663 21.94826754247545 74-75 21.836027930060645 27.643402222775315 28.47837486416591 22.042194982998126 76-77 21.922540536651226 27.634432627965737 28.383459508495307 22.059567326887723 78-79 21.89169290243328 27.688543753906814 28.355800357281087 22.063962986378815 80-81 21.91663593369623 27.673802283102344 28.333987114271125 22.075574668930297 82-83 21.983584663601782 27.659518500271542 28.391606845916108 21.965289990210568 84-85 22.10528688844938 27.622493986565612 28.258217066826223 22.014002058158784 86-87 21.925391943441436 27.648700266422615 28.33611250376109 22.08979528637486 88-89 22.021105257796414 27.67323356316146 28.215899077089933 22.089762101952196 90-91 22.06413876095144 27.711316993539565 28.21571818347689 22.008826062032103 92-93 22.10539232961369 27.68143243506155 28.202128335025495 22.01104690029927 94-95 22.039713289765665 27.741638585301093 28.17323037236963 22.045417752563615 96-97 22.084938884689503 27.902212700280366 28.193426756876853 21.819421658153278 98-99 23.17431624398533 29.743277002411116 28.449867890313175 18.632538863290378 100 29.27467153057886 40.8739202559646 29.851408213456537 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2046.0 1 2051.0 2 2554.5 3 3275.0 4 3999.0 5 4879.0 6 5643.0 7 8304.5 8 11016.0 9 11709.5 10 11846.0 11 12229.5 12 13489.0 13 15994.0 14 20804.0 15 25839.0 16 28540.5 17 29041.0 18 27774.0 19 25842.5 20 24541.5 21 24359.0 22 26369.5 23 31772.5 24 40802.5 25 52334.0 26 67225.0 27 83967.5 28 100382.5 29 117871.0 30 134828.5 31 151223.0 32 168711.5 33 185849.0 34 202124.0 35 217555.5 36 233579.5 37 248004.0 38 258189.5 39 267224.0 40 276895.5 41 285275.0 42 290611.0 43 295083.0 44 304810.0 45 313459.0 46 309407.5 47 303274.5 48 296640.0 49 286209.0 50 276769.5 51 264195.5 52 248564.0 53 233396.5 54 218324.0 55 201151.0 56 181941.5 57 162956.5 58 145145.0 59 125200.0 60 103673.0 61 83889.0 62 66441.5 63 51271.5 64 38753.5 65 29121.0 66 21572.5 67 16545.5 68 12595.5 69 9130.5 70 6748.0 71 4926.0 72 3483.5 73 2375.0 74 1636.5 75 1096.5 76 698.0 77 438.0 78 266.5 79 173.0 80 120.5 81 84.5 82 54.0 83 28.0 84 16.0 85 12.0 86 8.5 87 4.5 88 2.0 89 2.0 90 2.5 91 3.0 92 3.0 93 2.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.5687775929526444E-4 3 0.0 4 0.0 5 0.006607466808539302 6 4.2812959882544075E-4 7 0.0 8 2.854197325502938E-5 9 2.2833578604023505E-4 10-11 0.0 12-13 0.0 14-15 7.135493313757345E-6 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 7.849868832259935E-5 26-27 1.4274143053606044E-5 28-29 6.42586751531909E-4 30-31 2.7880104114317005E-4 32-33 0.0013906678445766677 34-35 2.230566299050153E-4 36-37 0.0012152439330935878 38-39 7.212326521691618E-4 40-41 6.458826048181227E-4 42-43 9.614405396728455E-5 44-45 5.225486069115414E-5 46-47 5.05453122504561E-4 48-49 0.0014325850616430684 50-51 0.0015765076065338472 52-53 0.0016135867729947944 54-55 0.0014172799469295218 56-57 0.0029106338901871615 58-59 3.834705345635175E-4 60-61 2.4199551437114558E-5 62-63 0.0018730779573417084 64-65 0.0024679061149284133 66-67 0.003052943107864473 68-69 6.817900608476587E-4 70-71 0.004666869806084747 72-73 0.001077848514341033 74-75 0.003992589126924496 76-77 3.2625319805288565E-4 78-79 0.0010617320454196478 80-81 1.805608708161902E-5 82-83 3.653453161725767E-5 84-85 8.684918546551163E-4 86-87 0.0 88-89 9.467296974053074E-6 90-91 0.0027804189094180745 92-93 5.533710344048247E-4 94-95 9.835279718797551E-6 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 42.0 20-21 182.0 22-23 411.0 24-25 608.0 26-27 2002.0 28-29 5516.0 30-31 17977.0 32-33 24067.0 34-35 33047.0 36-37 47062.0 38-39 51543.0 40-41 50370.0 42-43 59409.0 44-45 69606.0 46-47 68169.0 48-49 61233.0 50-51 56652.0 52-53 58122.0 54-55 63456.0 56-57 63810.0 58-59 60509.0 60-61 59044.0 62-63 60409.0 64-65 65715.0 66-67 69954.0 68-69 69840.0 70-71 73629.0 72-73 63347.0 74-75 64588.0 76-77 66250.0 78-79 65766.0 80-81 64987.0 82-83 62481.0 84-85 63572.0 86-87 66038.0 88-89 66135.0 90-91 65265.0 92-93 65074.0 94-95 75101.0 96-97 208575.0 98-99 1534707.0 100-101 3282954.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.85885875947132 #Duplication Level Percentage of deduplicated Percentage of total 1 90.60822178802053 78.70126738732527 2 6.690354792112741 11.622331638777453 3 1.5777423647592652 4.111227036583779 4 0.5634731018890748 1.9577052228697736 5 0.23656173437218556 1.027374113686462 6 0.11505173073425182 0.5995957217927462 7 0.07077128104924865 0.4302978893418477 8 0.040427911219824274 0.280921778446653 9 0.02871277565791822 0.2244563032917154 >10 0.066961375410698 0.853808870011643 >50 0.0011204768452648564 0.06495588326757414 >100 5.291330844259726E-4 0.083703248146807 >500 7.153484454904162E-5 0.04235490645832936 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.427098662751469E-5 0.0 0.0 0.0 3 0.0 1.427098662751469E-5 0.0 0.0 0.0 4 0.0 7.135493313757346E-5 0.0 0.0 0.0 5 0.0 8.562591976508814E-5 0.0 1.427098662751469E-5 0.0 6 1.4270986627514692E-4 8.562591976508814E-5 0.0 1.427098662751469E-5 1.427098662751469E-5 7 1.569808529026616E-4 1.1416789302011752E-4 0.0 1.427098662751469E-5 1.427098662751469E-5 8 1.7125183953017628E-4 1.2843887964763222E-4 0.0 1.427098662751469E-5 1.427098662751469E-5 9 1.7125183953017628E-4 2.4260677266774974E-4 0.0 2.854197325502938E-5 1.427098662751469E-5 10-11 1.7125183953017628E-4 2.4260677266774974E-4 0.0 4.994845319630141E-5 1.427098662751469E-5 12-13 1.7125183953017628E-4 2.4260677266774974E-4 0.0 5.708394651005876E-5 1.427098662751469E-5 14-15 1.7125183953017628E-4 3.5677466568786727E-4 0.0 5.708394651005876E-5 1.427098662751469E-5 16-17 1.8552282615769098E-4 3.7104565231538196E-4 0.0 5.708394651005876E-5 1.427098662751469E-5 18-19 1.8552282615769098E-4 3.92452132256654E-4 0.0 7.135493313757346E-5 2.854197325502938E-5 20-21 1.9265831947144833E-4 4.13858612197926E-4 0.0 8.562591976508816E-5 2.854197325502938E-5 22-23 2.0692930609896303E-4 4.281295988254407E-4 0.0 1.3557437296138954E-4 2.854197325502938E-5 24-25 2.1406479941272035E-4 4.566715720804701E-4 0.0 1.7125183953017628E-4 4.281295988254407E-5 26-27 2.1406479941272035E-4 4.780780520217421E-4 0.0 2.2120029272647772E-4 4.281295988254407E-5 28-29 2.1406479941272035E-4 5.066200252767715E-4 0.0 4.6380706539422747E-4 4.281295988254407E-5 30-31 2.1406479941272035E-4 5.422974918455583E-4 0.0 0.0013771502095551677 4.281295988254407E-5 32-33 2.354712793539924E-4 5.637039717868303E-4 0.0 0.003232378471132077 7.135493313757346E-5 34-35 2.5687775929526444E-4 6.564653848656757E-4 0.0 0.005765478597515935 8.562591976508814E-5 36-37 2.5687775929526444E-4 7.135493313757345E-4 0.0 0.00949020610729727 8.562591976508814E-5 38-39 2.5687775929526444E-4 7.492267979445212E-4 0.0 0.014877503559184064 8.562591976508814E-5 40-41 2.8541973255029383E-4 8.990721575334254E-4 0.0 0.020500272290424854 9.989690639260284E-5 42-43 2.8541973255029383E-4 9.632915973572416E-4 0.0 0.02615871848823443 9.989690639260284E-5 44-45 2.996907191778085E-4 0.0011060014636323885 0.0 0.032616339937184824 9.989690639260284E-5 46-47 3.139617058053232E-4 0.0012130338633387487 0.0 0.03996589805035489 1.2130338633387487E-4 48-49 3.139617058053232E-4 0.0012344403432800206 0.0 0.046994358964405875 1.4270986627514692E-4 50-51 3.5677466568786727E-4 0.0014770471159477705 0.0 0.053202238147374764 1.4270986627514692E-4 52-53 3.781811456291393E-4 0.0014984535958890426 0.0 0.05943152381028492 1.4984535958890424E-4 54-55 3.8531663894289666E-4 0.0015127245825165571 0.0 0.06573929989964641 1.569808529026616E-4 56-57 3.8531663894289666E-4 0.0015412665557715866 0.0 0.07271067686718735 1.569808529026616E-4 58-59 3.8531663894289666E-4 0.0015626730357128586 0.0 0.07923965324927532 1.569808529026616E-4 60-61 3.8531663894289666E-4 0.0016054859955954028 0.0 0.08519065467294895 1.569808529026616E-4 62-63 4.281295988254407E-4 0.0016411634621641895 0.0 0.09119160454981887 1.569808529026616E-4 64-65 4.281295988254407E-4 0.0018124153016943656 0.0 0.09707838653366868 1.569808529026616E-4 66-67 4.495360787667127E-4 0.0018266862883218804 0.0 0.103450382062854 1.569808529026616E-4 68-69 4.6380706539422747E-4 0.0018837702348319392 0.0 0.10967966772576415 1.569808529026616E-4 70-71 4.709425587079848E-4 0.0019123122080869684 0.0 0.1152096750439261 1.7125183953017628E-4 72-73 4.994845319630141E-4 0.001940854181341998 0.0 0.11952664849874929 1.9979381278520568E-4 74-75 4.994845319630141E-4 0.0020122091144795717 0.0 0.12285892387627398 1.9979381278520568E-4 76-77 4.994845319630141E-4 0.0020978350342446593 0.0 0.12639099306658386 1.9979381278520568E-4 78-79 4.994845319630141E-4 0.0021406479941272036 0.0 0.12853164106071108 1.9979381278520568E-4 80-81 4.994845319630141E-4 0.0021620544740684755 0.0 0.1292951388452831 2.1406479941272035E-4 82-83 4.994845319630141E-4 0.0021763254606959907 0.0 0.12990165577695248 2.4260677266774974E-4 84-85 4.994845319630141E-4 0.002212002927264777 0.0 0.13010858508305145 2.4260677266774974E-4 86-87 4.994845319630141E-4 0.002290493353716108 0.0 0.1302013464961303 2.4974226598150706E-4 88 4.994845319630141E-4 0.0023832547667949535 0.0 0.13020848198944404 2.5687775929526444E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8305 0.0 50.405952 1 GTATCAA 15880 0.0 34.99041 1 ATCAACG 19930 0.0 30.402822 3 TCAACGC 20145 0.0 30.03674 4 CAACGCA 20480 0.0 29.524956 5 TATCAAC 21010 0.0 29.05959 2 AACGCAG 21110 0.0 28.621727 6 ACGCAGA 23570 0.0 25.652254 7 CGCAGAG 24005 0.0 25.187403 8 CTTATAC 4795 0.0 24.906471 1 TGGTATC 3800 0.0 21.834213 2 GTGGTAT 3670 0.0 21.580015 1 GCAGAGT 28215 0.0 21.414305 9 TATACAC 7050 0.0 21.219345 3 GAGTACT 18480 0.0 20.440077 12-13 CAGAGTA 27655 0.0 19.385876 10-11 AGAGTAC 25945 0.0 18.66908 10-11 TACATGG 17110 0.0 18.147808 2 GTACTTT 20820 0.0 18.112785 14-15 TATGCCG 3700 0.0 18.001404 42-43 >>END_MODULE