##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140043_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 13842537 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.694424295199646 18.0 18.0 30.0 18.0 33.0 2 31.070143717152426 32.0 31.0 33.0 27.0 33.0 3 31.844421438064423 33.0 31.0 33.0 29.0 33.0 4 32.62748642102239 33.0 33.0 33.0 31.0 34.0 5 33.01034044554116 33.0 33.0 34.0 32.0 34.0 6 36.993289886095305 38.0 37.0 38.0 35.0 38.0 7 37.21130895297589 38.0 38.0 38.0 36.0 38.0 8 37.13671771294525 38.0 38.0 38.0 36.0 38.0 9 37.37618357097402 38.0 38.0 38.0 37.0 38.0 10-11 37.44071877864585 38.0 38.0 38.0 37.0 38.0 12-13 37.47801678261723 38.0 38.0 38.0 37.0 38.0 14-15 37.447809711471244 38.0 38.0 38.0 37.0 38.0 16-17 37.45177903443567 38.0 38.0 38.0 37.0 38.0 18-19 37.41255717792194 38.0 38.0 38.0 37.0 38.0 20-21 37.49873506857495 38.0 38.0 38.0 37.0 38.0 22-23 37.52224755372136 38.0 38.0 38.0 37.0 38.0 24-25 37.53154181524073 38.0 38.0 38.0 38.0 38.0 26-27 37.5140051025035 38.0 38.0 38.0 37.5 38.0 28-29 37.45072969741236 38.0 38.0 38.0 37.0 38.0 30-31 37.48805145323732 38.0 38.0 38.0 37.0 38.0 32-33 37.47698557589331 38.0 38.0 38.0 37.0 38.0 34-35 37.45720313713676 38.0 38.0 38.0 37.0 38.0 36-37 37.43821064816295 38.0 38.0 38.0 37.0 38.0 38-39 37.41556213973175 38.0 38.0 38.0 37.0 38.0 40-41 37.40947450871558 38.0 38.0 38.0 37.0 38.0 42-43 37.34686308535973 38.0 38.0 38.0 37.0 38.0 44-45 37.356868079651754 38.0 38.0 38.0 37.0 38.0 46-47 37.33886189742918 38.0 38.0 38.0 37.0 38.0 48-49 37.30632191112453 38.0 38.0 38.0 37.0 38.0 50-51 37.27471687320632 38.0 38.0 38.0 37.0 38.0 52-53 37.25255286772918 38.0 38.0 38.0 37.0 38.0 54-55 37.23867683566738 38.0 38.0 38.0 37.0 38.0 56-57 37.23943747248062 38.0 38.0 38.0 37.0 38.0 58-59 37.23348636195534 38.0 38.0 38.0 37.0 38.0 60-61 37.229214855591835 38.0 38.0 38.0 37.0 38.0 62-63 37.22929762254836 38.0 38.0 38.0 37.0 38.0 64-65 37.22718244477227 38.0 38.0 38.0 37.0 38.0 66-67 37.226032064419094 38.0 38.0 38.0 37.0 38.0 68-69 37.22587656742152 38.0 38.0 38.0 37.0 38.0 70-71 37.230633298433375 38.0 38.0 38.0 37.0 38.0 72-73 37.200698109927615 38.0 38.0 38.0 37.0 38.0 74-75 37.19522576855107 38.0 38.0 38.0 37.0 38.0 76-77 37.19026529818239 38.0 38.0 38.0 37.0 38.0 78-79 37.17420843120813 38.0 38.0 38.0 36.0 38.0 80-81 37.166412117385654 38.0 38.0 38.0 36.0 38.0 82-83 37.16596140645588 38.0 38.0 38.0 36.0 38.0 84-85 37.14823896805686 38.0 38.0 38.0 36.0 38.0 86-87 37.13098018726667 38.0 38.0 38.0 36.0 38.0 88-89 37.11413514913848 38.0 38.0 38.0 36.0 38.0 90-91 37.10010144754381 38.0 38.0 38.0 36.0 38.0 92-93 37.09397188281602 38.0 38.0 38.0 36.0 38.0 94-95 37.05634424651332 38.0 38.0 38.0 36.0 38.0 96-97 37.06558434486384 38.0 38.0 38.0 36.0 38.0 98-99 37.05494404661565 38.0 38.0 38.0 36.0 38.0 100 35.43139264318818 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 4.0 18 18.0 19 42.0 20 111.0 21 393.0 22 1016.0 23 2564.0 24 5551.0 25 10382.0 26 17668.0 27 28446.0 28 44448.0 29 65029.0 30 90048.0 31 120332.0 32 158414.0 33 212436.0 34 316441.0 35 577118.0 36 1961858.0 37 1.0230218E7 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.40671236782679 18.967375705768386 19.721652179799122 23.9042597466057 2 13.93019342522276 21.16231546785564 42.36823575382696 22.53925535309464 3 17.607653857092814 26.10532303435418 31.231883288446333 25.055139820106675 4 12.006888621645007 18.478794746945592 39.37147504102752 30.14284159038188 5 12.936398805023492 37.62755650335789 36.12869918104186 13.307345510576768 6 29.125265757822472 38.46804296047893 19.117824899999928 13.28886638169867 7 25.673415212832733 32.90467636098787 23.474353003354803 17.94755542282459 8 23.584346882178284 37.028757670290545 21.88652178037069 17.50037366716048 9 24.8850082849805 17.108540721526193 21.730950847891197 36.275500145602116 10-11 23.5063594195197 27.085237337635437 29.53827033295992 19.870132909884944 12-13 24.442203044138513 24.540302836105838 29.45676070795404 21.560733411801607 14-15 21.639575291695106 26.04320841210021 27.036053942716855 25.28116235348783 16-17 21.321785161202747 29.20678846659395 27.744632360383072 21.726794011820232 18-19 21.277125717633986 28.22022437072048 29.50238095805704 21.000268953588495 20-21 21.983376724177415 27.36633132496263 29.395065797125614 21.25522615373435 22-23 21.6679371908335 27.545387766094866 29.224076249944375 21.562598793127265 24-25 21.55132543899686 27.56754169524196 29.424899255726906 21.456233610034275 26-27 21.512514105707876 27.704748260530852 29.3969816205643 21.385756013196975 28-29 21.289023863780173 27.614339676043397 29.55237966725761 21.544256792918816 30-31 21.675716652582935 27.37021805868335 29.27327046357965 21.68079482515407 32-33 21.633336319352097 27.502338081682975 29.442503773834883 21.421821825130046 34-35 21.651422860401823 27.78540935838329 29.332122242481745 21.23104553873314 36-37 21.495365065326205 27.59884035657708 29.29474666564959 21.611047912447127 38-39 21.366013661800956 27.56098646452748 29.5481885066637 21.524811367007864 40-41 21.63114901741643 27.407705396203593 29.466714429545483 21.4944311568345 42-43 21.732315623948566 27.408587739040343 29.33612342792872 21.522973209082373 44-45 21.584360253354888 27.68016766382766 29.186523766535878 21.548948316281578 46-47 21.821054930738068 27.471908829830987 28.828343713248973 21.878692526181972 48-49 21.70299850207639 27.52945000463935 28.9341232270149 21.833428266269358 50-51 21.551792108028184 27.682061099146527 28.97740538294556 21.78874140987973 52-53 21.70964434768649 27.693381444319648 29.048947243182187 21.54802696481167 54-55 21.68419563362788 27.642441316946815 28.844280004507798 21.829083044917503 56-57 21.869359483052076 27.895252392197058 28.53835871720591 21.697029407544964 58-59 21.545302316410716 28.15013941689942 28.869926852931876 21.43463141375798 60-61 21.80538717033178 28.39734755484209 28.426785622321983 21.370479652504144 62-63 21.56758387170539 28.617614347717723 28.386690057588655 21.428111722988234 64-65 21.554476052104445 28.564280677058466 28.381253120617 21.49999015022009 66-67 21.626118298769644 28.49345855585487 28.286797422261124 21.593625723114368 68-69 21.63909127675525 28.365830608496523 28.40059012948822 21.59448798526001 70-71 21.67555167643076 28.046072281490503 28.483645930791113 21.794730111287624 72-73 21.79996814113621 27.794085741555758 28.552923682503064 21.853022434804974 74-75 21.736278568157914 27.90662052814768 28.44417691272621 21.912923990968196 76-77 21.80006004727188 27.87165963276762 28.39727641619623 21.931003903764264 78-79 21.792587871556364 27.89490336807671 28.37409598471502 21.938412775651905 80-81 21.809021535579905 27.90673902149279 28.34710887093092 21.93713057199639 82-83 21.865394891596505 27.85782823994905 28.4147780120537 21.861998856400746 84-85 22.007185603081453 27.847552029765865 28.281371989778425 21.863890377374254 86-87 21.81256098051784 27.823555720987258 28.396135355773783 21.967747942721118 88-89 21.921456523288928 27.830508759710586 28.297055340113342 21.95097937688715 90-91 21.962379697210785 27.877506270832775 28.32353904688733 21.836574985069113 92-93 21.944466460421722 27.903790863135047 28.278044206338844 21.87369847010439 94-95 21.931566246923413 27.94408265889672 28.228931459665024 21.89541963451484 96-97 21.97208515304346 28.03668479605608 28.313093893686975 21.678136157213494 98-99 23.06302697530751 29.917254134491237 28.578563061929096 18.44115582827216 100 21.88294340191808 30.868259108617423 22.554374891302984 24.694422598161513 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2566.0 1 2898.5 2 4084.0 3 5257.0 4 6445.5 5 7939.5 6 9261.5 7 13471.5 8 17753.5 9 19094.0 10 19589.5 11 20432.0 12 22670.5 13 26977.0 14 35363.5 15 43901.5 16 48239.5 17 48605.0 18 46035.5 19 42774.5 20 40617.5 21 41005.0 22 45889.5 23 55974.0 24 71997.5 25 94101.5 26 122025.0 27 153873.5 28 186448.0 29 221776.0 30 255799.5 31 288651.0 32 323679.5 33 357562.0 34 389648.5 35 419595.0 36 452139.5 37 481792.5 38 503687.5 39 522363.5 40 542695.0 41 559713.5 42 568859.0 43 577866.0 44 605627.5 45 638200.0 46 627444.0 47 605960.0 48 588888.5 49 561256.0 50 540922.5 51 515304.5 52 481631.0 53 448545.5 54 416009.5 55 379973.5 56 342149.0 57 304088.5 58 266131.0 59 229167.5 60 191153.0 61 153965.0 62 120069.5 63 91525.5 64 68691.0 65 50851.5 66 37748.5 67 28583.0 68 21314.5 69 15429.0 70 11287.0 71 8207.5 72 5689.0 73 3852.5 74 2611.0 75 1745.5 76 1116.5 77 681.5 78 435.0 79 278.0 80 173.0 81 111.0 82 79.0 83 57.0 84 37.0 85 17.5 86 9.5 87 8.5 88 5.0 89 2.5 90 3.5 91 3.5 92 2.5 93 2.0 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.1672327839903914E-4 3 0.0 4 0.0 5 0.006689525193250341 6 3.395331361584947E-4 7 0.0 8 2.8896437119871884E-5 9 1.3003396703942347E-4 10-11 0.0 12-13 0.0 14-15 7.224109279967971E-6 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 9.39213353186377E-5 26-27 1.8063395219609162E-5 28-29 6.468595852502572E-4 30-31 2.4956768727794356E-4 32-33 0.001565461058721314 34-35 3.451182872949171E-4 36-37 0.0014183946682070408 38-39 7.588446923157884E-4 40-41 7.817023537758454E-4 42-43 1.4838275777516376E-4 44-45 6.725199816895226E-5 46-47 5.311671758274482E-4 48-49 0.0015989648734383221 50-51 0.0017950382463708748 52-53 0.0017657312583240928 54-55 0.0014955846069304537 56-57 0.003145067922500513 58-59 3.9891922118802966E-4 60-61 7.9659221038765E-6 62-63 0.001996608978593901 64-65 0.002525209023872953 66-67 0.003332670756899069 68-69 8.237570199931624E-4 70-71 0.005023074749631118 72-73 0.001182927582106198 74-75 0.00389980622971571 76-77 3.0689196801909056E-4 78-79 0.0010304923561482886 80-81 4.411771842572099E-6 82-83 3.5653900104367884E-5 84-85 9.678062187266361E-4 86-87 0.0 88-89 1.8385706473758933E-5 90-91 0.003081121323683181 92-93 4.557169075294957E-4 94-95 4.751756367947503E-6 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 86.0 20-21 279.0 22-23 626.0 24-25 969.0 26-27 2956.0 28-29 7935.0 30-31 24727.0 32-33 31750.0 34-35 44513.0 36-37 69515.0 38-39 79770.0 40-41 79451.0 42-43 91433.0 44-45 107814.0 46-47 109883.0 48-49 102924.0 50-51 95353.0 52-53 95571.0 54-55 104366.0 56-57 106767.0 58-59 105468.0 60-61 107890.0 62-63 108903.0 64-65 117598.0 66-67 130475.0 68-69 135974.0 70-71 155947.0 72-73 116421.0 74-75 110958.0 76-77 115976.0 78-79 117657.0 80-81 115672.0 82-83 111602.0 84-85 111807.0 86-87 116201.0 88-89 118241.0 90-91 117627.0 92-93 116994.0 94-95 137097.0 96-97 415306.0 98-99 905649.0 100-101 9096386.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.60566377173882 #Duplication Level Percentage of deduplicated Percentage of total 1 89.32437066907416 75.57347671449857 2 7.350354527884082 12.437632475784772 3 1.879173783637769 4.769662359213701 4 0.691306761231748 2.33953869615612 5 0.30521402154585187 1.2911417442664295 6 0.15938611223243498 0.8090980692853214 7 0.0916645982225627 0.5428740923892768 8 0.053117546025576855 0.3595236191535853 9 0.036950833983788414 0.2813624852505968 >10 0.10604486517102263 1.3580905701439985 >50 0.0018357809967657897 0.1059854682878295 >100 5.256234701624427E-4 0.07700057961218208 >500 2.7457388762197376E-5 0.017275717417281487 >1k 2.741913531528464E-5 0.03733740854042216 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.4448218559935942E-5 2 0.0 7.224109279967971E-6 0.0 0.0 1.4448218559935942E-5 3 0.0 1.4448218559935942E-5 0.0 0.0 1.4448218559935942E-5 4 0.0 2.1672327839903914E-5 0.0 0.0 1.4448218559935942E-5 5 0.0 2.1672327839903914E-5 0.0 0.0 1.4448218559935942E-5 6 0.0 2.1672327839903914E-5 0.0 0.0 2.8896437119871884E-5 7 0.0 2.8896437119871884E-5 0.0 0.0 2.8896437119871884E-5 8 0.0 4.334465567980783E-5 0.0 0.0 3.6120546399839856E-5 9 0.0 1.011375299195516E-4 0.0 1.4448218559935942E-5 4.334465567980783E-5 10-11 0.0 1.011375299195516E-4 0.0 3.6120546399839856E-5 4.334465567980783E-5 12-13 0.0 1.011375299195516E-4 0.0 5.05687649597758E-5 4.695671031979181E-5 14-15 0.0 1.4448218559935943E-4 0.0 7.585314743966369E-5 5.7792874239743774E-5 16-17 0.0 1.5531834951931138E-4 0.0 9.752547527956761E-5 7.224109279967971E-5 18-19 0.0 1.9143889591915125E-4 0.0 1.011375299195516E-4 7.585314743966369E-5 20-21 0.0 2.2394738767900712E-4 0.0 1.011375299195516E-4 9.030136599959965E-5 22-23 3.6120546399839855E-6 2.4923177015889503E-4 0.0 1.1558574847948753E-4 1.1919780311947152E-4 24-25 7.224109279967971E-6 2.60067934078847E-4 0.0 1.4087013095937545E-4 1.3725807631939145E-4 26-27 7.224109279967971E-6 2.60067934078847E-4 0.0 1.7337862271923132E-4 1.3725807631939145E-4 28-29 7.224109279967971E-6 2.6367998871883094E-4 0.0 3.792657371983185E-4 1.3725807631939145E-4 30-31 7.224109279967971E-6 3.178608083185907E-4 0.0 0.0012028141951146672 1.4448218559935943E-4 32-33 7.224109279967971E-6 3.3230902687852667E-4 0.0 0.003005229460466676 1.6615451343926334E-4 34-35 7.224109279967971E-6 4.009380650382224E-4 0.0 0.005197746626936955 1.7337862271923132E-4 36-37 7.224109279967971E-6 4.5873093927796614E-4 0.0 0.00834745827300299 1.8060273199919927E-4 38-39 7.224109279967971E-6 4.6956710319791815E-4 0.0 0.013028681086422236 1.8782684127916725E-4 40-41 7.224109279967971E-6 5.526443599175498E-4 0.0 0.017554585550322167 1.9505095055913523E-4 42-43 7.224109279967971E-6 5.670925784774857E-4 0.0 0.02242363520502058 1.986630051991192E-4 44-45 7.224109279967971E-6 6.032131248773256E-4 0.0 0.02801870784235578 2.0588711447908718E-4 46-47 7.224109279967971E-6 6.321095619971975E-4 0.0 0.034300070861287925 2.1311122375905516E-4 48-49 7.224109279967971E-6 6.465577805571333E-4 0.0 0.04031414183686126 2.3839560623894305E-4 50-51 7.224109279967971E-6 7.296350372767651E-4 0.0 0.04594533502059629 2.3839560623894305E-4 52-53 7.224109279967971E-6 7.44083255836701E-4 0.0 0.051731846553850644 2.7090409799879894E-4 54-55 7.224109279967971E-6 7.58531474396637E-4 0.0 0.0581468555944622 3.034125897586548E-4 56-57 7.224109279967971E-6 7.874279115165088E-4 0.0 0.06421510738963529 3.0702464439863876E-4 58-59 7.224109279967971E-6 8.127122939963968E-4 0.0 0.07051091862712738 3.1424875367860676E-4 60-61 1.4448218559935942E-5 8.416087311162686E-4 0.0 0.07662251507798029 3.178608083185907E-4 62-63 1.4448218559935942E-5 8.596690043161887E-4 0.0 0.0826401981081936 3.539813547184306E-4 64-65 1.4448218559935942E-5 9.752547527956761E-4 0.0 0.08862537264664708 3.539813547184306E-4 66-67 1.4448218559935942E-5 9.969270806355801E-4 0.0 0.09461415923974051 3.575934093584146E-4 68-69 1.4448218559935942E-5 0.001029435572395436 0.0 0.10044762748331465 3.6120546399839854E-4 70-71 1.4448218559935942E-5 0.0010438837909553717 0.0 0.10527333248233325 3.792657371983185E-4 72-73 1.4448218559935942E-5 0.0010511079002353397 0.0 0.1090515416357565 4.045501196782064E-4 74-75 1.4448218559935942E-5 0.0010872284466351798 0.0 0.11235657163134186 4.045501196782064E-4 76-77 1.4448218559935942E-5 0.0011414092662349394 0.0 0.11560380875268746 4.081621743181904E-4 78-79 1.4448218559935942E-5 0.0011811418672747632 0.0 0.11758321469539869 4.1177422895817436E-4 80-81 1.4448218559935942E-5 0.0011847539219147472 0.0 0.11829117740483555 4.262224475181103E-4 82-83 1.4448218559935942E-5 0.0012028141951146672 0.0 0.1187318480709136 4.551188846379822E-4 84-85 1.4448218559935942E-5 0.001242546796154491 0.0 0.11896663162251256 4.551188846379822E-4 86-87 1.4448218559935942E-5 0.0012858914518342989 0.0 0.11904609682459219 4.6234299391795014E-4 88 1.4448218559935942E-5 0.0013725807631939145 0.0 0.11906054504315214 4.6956710319791815E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14290 0.0 45.279133 1 CTTATAC 12390 0.0 39.675438 1 GTATCAA 27000 0.0 35.353424 1 ATCAACG 34070 0.0 31.715214 3 TCAACGC 34280 0.0 31.545841 4 TATACAC 17860 0.0 30.895863 3 CAACGCA 35310 0.0 30.553072 5 TATCAAC 36210 0.0 30.100231 2 AACGCAG 36520 0.0 29.632294 6 TTATACA 19730 0.0 26.733606 2 ACGCAGA 41470 0.0 26.064297 7 CGCAGAG 42180 0.0 25.574944 8 ACACATC 21740 0.0 23.33707 6 ACATCTC 22465 0.0 23.211176 8 TACACAT 25055 0.0 22.006508 5 GCAGAGT 49925 0.0 21.598879 9 CACATCT 24735 0.0 20.493998 7 CATCTCC 25860 0.0 19.486837 9 GAGTACT 31885 0.0 19.085995 12-13 AGAGTAC 45485 0.0 19.08309 10-11 >>END_MODULE