##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140042_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5046313 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.594232264229348 18.0 18.0 30.0 18.0 33.0 2 31.044426891475023 32.0 31.0 33.0 27.0 33.0 3 31.822516161799715 33.0 31.0 33.0 29.0 33.0 4 32.62140200181796 33.0 33.0 33.0 31.0 34.0 5 33.01224914110559 33.0 33.0 34.0 32.0 34.0 6 36.99918098619725 38.0 37.0 38.0 35.0 38.0 7 37.23708002258282 38.0 38.0 38.0 36.0 38.0 8 37.16530940510428 38.0 38.0 38.0 36.0 38.0 9 37.39863421075942 38.0 38.0 38.0 37.0 38.0 10-11 37.465253146207935 38.0 38.0 38.0 37.0 38.0 12-13 37.49985474543493 38.0 38.0 38.0 37.0 38.0 14-15 37.47116300554484 38.0 38.0 38.0 37.0 38.0 16-17 37.47636026540566 38.0 38.0 38.0 37.0 38.0 18-19 37.43413438682856 38.0 38.0 38.0 37.0 38.0 20-21 37.51834001876589 38.0 38.0 38.0 37.0 38.0 22-23 37.54351514579875 38.0 38.0 38.0 38.0 38.0 24-25 37.55307075621269 38.0 38.0 38.0 38.0 38.0 26-27 37.53709369629267 38.0 38.0 38.0 38.0 38.0 28-29 37.47230480498357 38.0 38.0 38.0 37.0 38.0 30-31 37.510709013294715 38.0 38.0 38.0 37.5 38.0 32-33 37.499625433665415 38.0 38.0 38.0 37.5 38.0 34-35 37.477061435588915 38.0 38.0 38.0 37.0 38.0 36-37 37.45982115070956 38.0 38.0 38.0 37.0 38.0 38-39 37.43512448956572 38.0 38.0 38.0 37.0 38.0 40-41 37.431323089877324 38.0 38.0 38.0 37.0 38.0 42-43 37.372668674887706 38.0 38.0 38.0 37.0 38.0 44-45 37.383738775440136 38.0 38.0 38.0 37.0 38.0 46-47 37.3642440199267 38.0 38.0 38.0 37.0 38.0 48-49 37.331545829476994 38.0 38.0 38.0 37.0 38.0 50-51 37.300265457802794 38.0 38.0 38.0 37.0 38.0 52-53 37.278975562923236 38.0 38.0 38.0 37.0 38.0 54-55 37.265524869345214 38.0 38.0 38.0 37.0 38.0 56-57 37.268011356308946 38.0 38.0 38.0 37.0 38.0 58-59 37.26083058746955 38.0 38.0 38.0 37.0 38.0 60-61 37.25599731841248 38.0 38.0 38.0 37.0 38.0 62-63 37.25616040589089 38.0 38.0 38.0 37.0 38.0 64-65 37.256427915713275 38.0 38.0 38.0 37.0 38.0 66-67 37.25591167516266 38.0 38.0 38.0 37.0 38.0 68-69 37.25406957148407 38.0 38.0 38.0 37.0 38.0 70-71 37.259377734897896 38.0 38.0 38.0 37.0 38.0 72-73 37.22777882563848 38.0 38.0 38.0 37.0 38.0 74-75 37.22540173448604 38.0 38.0 38.0 37.0 38.0 76-77 37.22081802368278 38.0 38.0 38.0 37.0 38.0 78-79 37.20709491465723 38.0 38.0 38.0 37.0 38.0 80-81 37.20217207145211 38.0 38.0 38.0 36.5 38.0 82-83 37.203674996598934 38.0 38.0 38.0 36.5 38.0 84-85 37.185712180560685 38.0 38.0 38.0 36.0 38.0 86-87 37.168660767783976 38.0 38.0 38.0 36.0 38.0 88-89 37.15185562769005 38.0 38.0 38.0 36.0 38.0 90-91 37.14030861658725 38.0 38.0 38.0 36.0 38.0 92-93 37.136022175954544 38.0 38.0 38.0 36.0 38.0 94-95 37.09742950999466 38.0 38.0 38.0 36.0 38.0 96-97 37.1117937097427 38.0 38.0 38.0 36.0 38.0 98-99 37.10084033401694 38.0 38.0 38.0 36.0 38.0 100 35.51672812215866 38.0 36.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 5.0 18 6.0 19 8.0 20 40.0 21 146.0 22 328.0 23 795.0 24 1788.0 25 3325.0 26 5781.0 27 9525.0 28 15089.0 29 22289.0 30 31387.0 31 41920.0 32 54793.0 33 74608.0 34 111566.0 35 204541.0 36 712244.0 37 3756129.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.33656632079699 18.93580521065578 19.757058272049317 23.970570196497917 2 14.020716944520187 21.152015415638854 42.25700631590962 22.570261323931337 3 17.647399200168522 25.939651385080552 31.234051474809434 25.178897939941496 4 12.09302712693406 18.451035439141407 39.26849166906611 30.187445764858424 5 13.061854450394383 37.4520485668722 36.057991383654866 13.428105599078554 6 29.22027286971758 38.321214531623326 19.08881196110173 13.369700637557367 7 25.74402340877389 32.81108405285205 23.432315831380258 18.012576706993798 8 23.62509492080553 37.016993796657836 21.850452369968405 17.50745891256823 9 24.968942622374193 17.087274748553643 21.717078139351468 36.226704489720696 10-11 23.624981248685923 26.95913828571474 29.488172850158122 19.927707615441214 12-13 24.509270431699342 24.452030621168365 29.401792952597273 21.63690599453502 14-15 21.728101289000502 25.925938402948844 26.98121380897301 25.364746499077643 16-17 21.425196970540668 29.07221569490438 27.723944194503986 21.778643140050963 18-19 21.425821188657938 28.12139278716956 29.403675515173155 21.04911050899934 20-21 22.101119500811194 27.32360376492167 29.25618085606648 21.31909587820066 22-23 21.806473629186474 27.459363072825184 29.122165878585687 21.611997419402655 24-25 21.75557734891952 27.559353638816315 29.221700443242938 21.46336856902123 26-27 21.756360709524014 27.755091847791295 29.131594756243572 21.356952686441115 28-29 21.56046671987965 27.7548919661483 29.160634606440038 21.524006707532017 30-31 22.150577771057183 27.421515144208854 29.104170840165967 21.323736244568 32-33 21.536229088660303 27.75746325788382 29.113058936521792 21.59324871693408 34-35 21.747139293810825 27.739678229123676 29.20626992624672 21.306912550818783 36-37 21.592825881929276 27.723340695442584 29.19633971688625 21.487493705741894 38-39 21.471297103169068 27.43029575426567 29.46029370705667 21.638113435508586 40-41 21.77547576408509 27.317438043994013 29.345395683467807 21.561690508453086 42-43 21.86321402575257 27.319801700155445 29.18977502162078 21.627209252471207 44-45 21.721676552097495 27.565601369582627 29.07245636549412 21.640265712825755 46-47 21.92112390102345 27.334661658548644 28.745148829947837 21.99906561048007 48-49 21.814048807819706 27.374877798832088 28.862282336834955 21.94879105651325 50-51 21.670252520248134 27.549790139733638 28.8910298121282 21.888927527890033 52-53 21.820033204534273 27.540445176435778 28.953720186892333 21.685801432137612 54-55 21.76438745644659 27.536990565113896 28.72160278049828 21.97701919794124 56-57 21.987790717335205 27.71836068561011 28.451092113054116 21.84275648400057 58-59 21.64243502008301 28.037337093355873 28.80627068187083 21.513957204690282 60-61 21.916406800230895 28.22021339169238 28.354226704302114 21.509153103774608 62-63 21.632400814739913 28.470590626779014 28.326308703878812 21.570699854602267 64-65 21.63500574065611 28.413193476831154 28.333515399449343 21.618285383063395 66-67 21.70560810546784 28.368788336295562 28.200378620625894 21.725224937610705 68-69 21.762336558589315 28.193734434693575 28.338445099900344 21.70548390681676 70-71 21.757932655186 27.899986146549242 28.385835762101586 21.956245436163172 72-73 21.915147295916874 27.737996515165282 28.416275953555605 21.930580235362243 74-75 21.816763755913566 27.80067378307578 28.37040279126921 22.012159669741436 76-77 21.90781634181615 27.77390094870271 28.293697465743605 22.024585243737533 78-79 21.883767674808887 27.796684259773656 28.278756470579324 22.040791594838133 80-81 21.921745075366804 27.78214696766814 28.242003359895552 22.0541045970695 82-83 21.978280603426793 27.778071060455872 28.29818401821114 21.9454643179062 84-85 22.10449078126849 27.72575021029181 28.19641689051902 21.973342117920684 86-87 21.932438108754408 27.721852878468294 28.256508202966206 22.089200809811093 88-89 22.028591004109597 27.75869249309977 28.189106289052628 22.02361021373801 90-91 22.06235540659186 27.820611249607474 28.19121897450029 21.925814369300376 92-93 22.0892902555472 27.765019039597544 28.184929722381437 21.960760982473822 94-95 22.00186665544103 27.851419787255832 28.127077349223377 22.019636208079756 96-97 22.09587078858729 27.924502097200993 28.210602191048217 21.7690249231635 98-99 23.14857670335494 29.81919877190532 28.463887996843358 18.568336527896385 100 21.953549730359097 30.836090276710664 22.41688020703951 24.793479785890725 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 904.0 1 1005.0 2 1497.0 3 2049.0 4 2448.5 5 2921.0 6 3427.0 7 5016.0 8 6581.0 9 6989.0 10 7196.5 11 7528.0 12 8209.0 13 9679.0 14 12583.5 15 15560.5 16 17039.0 17 17169.0 18 16370.0 19 15221.0 20 14489.0 21 14684.0 22 16533.0 23 20508.0 24 26456.0 25 34593.0 26 45052.5 27 56744.0 28 67984.0 29 79734.5 30 91076.0 31 102324.0 32 114937.0 33 127107.0 34 138913.5 35 150160.5 36 162349.5 37 172941.0 38 180251.5 39 187664.0 40 195711.0 41 201922.5 42 207365.0 43 221313.5 44 227461.0 45 223757.0 46 221390.5 47 215334.0 48 209700.0 49 204340.0 50 198585.5 51 189955.0 52 179088.5 53 168082.5 54 156718.0 55 144076.0 56 130759.5 57 117372.0 58 103321.5 59 88934.5 60 73756.5 61 59197.0 62 46472.5 63 35451.5 64 26436.5 65 19548.5 66 14417.5 67 10959.5 68 8290.0 69 6028.0 70 4382.0 71 3127.5 72 2193.0 73 1465.5 74 943.5 75 629.5 76 392.0 77 234.0 78 144.5 79 87.5 80 64.0 81 41.5 82 29.5 83 20.5 84 11.5 85 5.5 86 3.5 87 3.5 88 2.5 89 2.0 90 1.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 1.783480335048579E-4 3 0.0 4 0.0 5 0.006380896309840472 6 4.359618596785415E-4 7 0.0 8 1.9816448167206435E-5 9 1.5853158533765148E-4 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 8.918161598277249E-5 26-27 1.9819766967107907E-5 28-29 6.740794255891652E-4 30-31 2.976632541558999E-4 32-33 0.0017299465883961944 34-35 2.990797316656648E-4 36-37 0.001421223531338129 38-39 7.246705013814032E-4 40-41 8.505569426609188E-4 42-43 1.222662788380302E-4 44-45 6.158929955721399E-5 46-47 5.693677264566963E-4 48-49 0.0017848410630346369 50-51 0.001914382100569434 52-53 0.0019921899794751448 54-55 0.001356228463198794 56-57 0.0031877006447555327 58-59 3.91003742448876E-4 60-61 1.0953273226881392E-5 62-63 0.0022757580179871054 64-65 0.0024634053335066265 66-67 0.003513339033500701 68-69 9.109094155240827E-4 70-71 0.005319994808974762 72-73 0.0011781621463734654 74-75 0.004217593419988777 76-77 3.688427356899132E-4 78-79 0.0011180660967014164 80-81 0.0 82-83 3.683083438168211E-5 84-85 0.001116251933596405 86-87 0.0 88-89 2.5347527272671965E-5 90-91 0.0033836115798466966 92-93 5.832778895295008E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 25.0 20-21 124.0 22-23 220.0 24-25 324.0 26-27 1074.0 28-29 3067.0 30-31 9562.0 32-33 12701.0 34-35 17360.0 36-37 26521.0 38-39 30008.0 40-41 29992.0 42-43 34545.0 44-45 40603.0 46-47 40346.0 48-49 37539.0 50-51 35132.0 52-53 35525.0 54-55 38871.0 56-57 39513.0 58-59 38736.0 60-61 38963.0 62-63 39628.0 64-65 43237.0 66-67 48080.0 68-69 49978.0 70-71 56977.0 72-73 43357.0 74-75 41334.0 76-77 43058.0 78-79 43666.0 80-81 43078.0 82-83 41349.0 84-85 42309.0 86-87 43449.0 88-89 43841.0 90-91 43813.0 92-93 43798.0 94-95 50772.0 96-97 152939.0 98-99 328001.0 100-101 3292898.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.07316782147781 #Duplication Level Percentage of deduplicated Percentage of total 1 91.85795115210831 81.82078698708855 2 6.1163064696486025 10.89597585237201 3 1.2386259800400239 3.3098501936444245 4 0.4153111016979386 1.479723018386533 5 0.16106662426186655 0.7173357226658075 6 0.07616612421158148 0.40706147785258323 7 0.040074865364830126 0.24987166456452498 8 0.027414851541820925 0.1953542137748412 9 0.017656474454788514 0.1415446301022312 >10 0.04795130218903195 0.632077485790387 >50 0.0010756286176622565 0.06610426589702442 >100 3.6930529436639124E-4 0.06475589528585424 >500 3.0120569137147654E-5 0.019558592575214202 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.9816448167206435E-5 0.0 2 0.0 0.0 0.0 3.963289633441287E-5 0.0 3 0.0 0.0 0.0 3.963289633441287E-5 0.0 4 0.0 5.94493445016193E-5 0.0 3.963289633441287E-5 0.0 5 0.0 5.94493445016193E-5 0.0 3.963289633441287E-5 0.0 6 0.0 5.94493445016193E-5 0.0 3.963289633441287E-5 0.0 7 0.0 5.94493445016193E-5 0.0 3.963289633441287E-5 0.0 8 0.0 5.94493445016193E-5 0.0 3.963289633441287E-5 0.0 9 0.0 9.908224083603217E-5 0.0 3.963289633441287E-5 0.0 10-11 0.0 9.908224083603217E-5 0.0 5.94493445016193E-5 0.0 12-13 0.0 1.089904649196354E-4 0.0 6.935756858522252E-5 0.0 14-15 0.0 1.8825625758846112E-4 0.0 7.926579266882574E-5 9.908224083603218E-6 16-17 0.0 1.9816448167206434E-4 0.0 7.926579266882574E-5 1.9816448167206435E-5 18-19 0.0 2.2788915392287399E-4 0.0 7.926579266882574E-5 2.9724672250809654E-5 20-21 9.908224083603218E-6 2.576138261736836E-4 0.0 9.908224083603217E-5 3.963289633441287E-5 22-23 1.9816448167206435E-5 2.873384984244933E-4 0.0 1.5853158533765148E-4 3.963289633441287E-5 24-25 1.9816448167206435E-5 3.566960670097158E-4 0.0 2.1798092983927076E-4 3.963289633441287E-5 26-27 1.9816448167206435E-5 3.963289633441287E-4 0.0 2.477056020900804E-4 3.963289633441287E-5 28-29 1.9816448167206435E-5 3.963289633441287E-4 0.0 6.242181172670027E-4 3.963289633441287E-5 30-31 1.9816448167206435E-5 4.1614541151133513E-4 0.0 0.0015456829570421019 3.963289633441287E-5 32-33 4.9541120418016086E-5 4.1614541151133513E-4 0.0 0.0037155840313512064 3.963289633441287E-5 34-35 5.94493445016193E-5 4.4587008376214475E-4 0.0 0.007322177597782777 3.963289633441287E-5 36-37 5.94493445016193E-5 4.5577830784574797E-4 0.0 0.012088033381995926 3.963289633441287E-5 38-39 5.94493445016193E-5 4.5577830784574797E-4 0.0 0.018637369501257654 3.963289633441287E-5 40-41 9.908224083603217E-5 5.251358764309705E-4 0.0 0.025573126359779902 5.94493445016193E-5 42-43 9.908224083603217E-5 5.548605486817801E-4 0.0 0.03277640526855944 5.94493445016193E-5 44-45 9.908224083603217E-5 6.044016690997963E-4 0.0 0.04104977237836813 5.94493445016193E-5 46-47 9.908224083603217E-5 6.341263413506059E-4 0.0 0.05035359479287155 5.94493445016193E-5 48-49 9.908224083603217E-5 6.539427895178123E-4 0.0 0.05969705010370938 5.94493445016193E-5 50-51 9.908224083603217E-5 7.133921340194316E-4 0.0 0.06860454355486867 7.926579266882574E-5 52-53 9.908224083603217E-5 7.133921340194316E-4 0.0 0.0773237807484395 9.908224083603217E-5 54-55 9.908224083603217E-5 7.133921340194316E-4 0.0 0.08528999291165648 9.908224083603217E-5 56-57 9.908224083603217E-5 7.133921340194316E-4 0.0 0.09142318361940688 1.188986890032386E-4 58-59 9.908224083603217E-5 7.530250303538445E-4 0.0 0.09737802629365241 1.188986890032386E-4 60-61 1.188986890032386E-4 7.728414785210509E-4 0.0 0.10351121700140281 1.188986890032386E-4 62-63 1.188986890032386E-4 7.926579266882574E-4 0.0 0.10929761986622709 1.188986890032386E-4 64-65 1.288069130868418E-4 8.322908230226703E-4 0.0 0.11497503226613173 1.188986890032386E-4 66-67 1.3871513717044504E-4 8.71923719357083E-4 0.0 0.12021648280635783 1.288069130868418E-4 68-69 1.3871513717044504E-4 8.71923719357083E-4 0.0 0.12561646493192158 1.3871513717044504E-4 70-71 1.3871513717044504E-4 8.818319434406863E-4 0.0 0.13046158650880355 1.6843980942125468E-4 72-73 1.3871513717044504E-4 9.016483916078927E-4 0.0 0.13424652810874 2.1798092983927076E-4 74-75 1.5853158533765148E-4 9.511895120259088E-4 0.0 0.13743697626366022 2.1798092983927076E-4 76-77 1.5853158533765148E-4 9.908224083603216E-4 0.0 0.14082558890025254 2.1798092983927076E-4 78-79 1.6843980942125468E-4 0.001010638856527528 0.0 0.14310448043948126 2.1798092983927076E-4 80-81 1.783480335048579E-4 0.001010638856527528 0.0 0.14366924921224666 2.2788915392287399E-4 82-83 1.783480335048579E-4 0.001010638856527528 0.0 0.14409530284784158 2.377973780064772E-4 84-85 1.783480335048579E-4 0.0010205470806111312 0.0 0.14427365088134644 2.377973780064772E-4 86-87 1.783480335048579E-4 0.0010304553046947345 0.0 0.14440245779443328 2.377973780064772E-4 88 1.783480335048579E-4 0.0010700882010291474 0.0 0.14440245779443328 2.377973780064772E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5240 0.0 47.086308 1 CTTATAC 4885 0.0 37.138336 1 GTATCAA 9850 0.0 35.406574 1 ATCAACG 12150 0.0 31.690445 3 TCAACGC 12245 0.0 31.409721 4 TATACAC 6695 0.0 31.178581 3 CAACGCA 12485 0.0 30.80593 5 TATCAAC 12985 0.0 29.849836 2 AACGCAG 13025 0.0 29.559477 6 TTATACA 7190 0.0 26.894741 2 ACGCAGA 14705 0.0 26.09532 7 CGCAGAG 14985 0.0 25.607716 8 ACACATC 8135 0.0 23.086763 6 ACATCTC 8305 0.0 22.71698 8 TACACAT 9490 0.0 21.635998 5 GCAGAGT 17810 0.0 21.44999 9 GAGTACT 11130 0.0 20.134094 12-13 TACATGG 12430 0.0 20.05579 2 CACATCT 9465 0.0 19.61718 7 TGGTATC 2665 0.0 19.541624 2 >>END_MODULE