##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140041_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5313911 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.194399191104253 18.0 18.0 30.0 18.0 33.0 2 31.310990342141597 32.0 32.0 33.0 27.0 33.0 3 31.974039836195978 33.0 31.0 33.0 29.0 33.0 4 32.67171260489685 33.0 33.0 33.0 31.0 34.0 5 33.05011487772377 33.0 33.0 34.0 33.0 34.0 6 37.083047495526365 38.0 38.0 38.0 36.0 38.0 7 37.335178364861584 38.0 38.0 38.0 37.0 38.0 8 37.29227851200368 38.0 38.0 38.0 36.0 38.0 9 37.48791483334968 38.0 38.0 38.0 37.0 38.0 10-11 37.53233766993839 38.0 38.0 38.0 37.5 38.0 12-13 37.56171292669373 38.0 38.0 38.0 38.0 38.0 14-15 37.531552749001634 38.0 38.0 38.0 38.0 38.0 16-17 37.53913831074702 38.0 38.0 38.0 38.0 38.0 18-19 37.49112678025658 38.0 38.0 38.0 38.0 38.0 20-21 37.573475473387816 38.0 38.0 38.0 38.0 38.0 22-23 37.59184558309081 38.0 38.0 38.0 38.0 38.0 24-25 37.59769796625109 38.0 38.0 38.0 38.0 38.0 26-27 37.57777687214893 38.0 38.0 38.0 38.0 38.0 28-29 37.50843820167309 38.0 38.0 38.0 38.0 38.0 30-31 37.54564317552547 38.0 38.0 38.0 38.0 38.0 32-33 37.53054749537457 38.0 38.0 38.0 38.0 38.0 34-35 37.50596870986354 38.0 38.0 38.0 38.0 38.0 36-37 37.48454693824398 38.0 38.0 38.0 38.0 38.0 38-39 37.454722018090344 38.0 38.0 38.0 38.0 38.0 40-41 37.45069345656826 38.0 38.0 38.0 38.0 38.0 42-43 37.38364866913028 38.0 38.0 38.0 37.0 38.0 44-45 37.38616613380299 38.0 38.0 38.0 37.0 38.0 46-47 37.3614146744421 38.0 38.0 38.0 37.0 38.0 48-49 37.32581870054847 38.0 38.0 38.0 37.0 38.0 50-51 37.29814633428328 38.0 38.0 38.0 37.0 38.0 52-53 37.281177934916336 38.0 38.0 38.0 37.0 38.0 54-55 37.272616919020145 38.0 38.0 38.0 37.0 38.0 56-57 37.27747370698125 38.0 38.0 38.0 37.0 38.0 58-59 37.27474148636205 38.0 38.0 38.0 37.0 38.0 60-61 37.27457616751789 38.0 38.0 38.0 37.0 38.0 62-63 37.27741186257718 38.0 38.0 38.0 37.0 38.0 64-65 37.2825097804221 38.0 38.0 38.0 37.0 38.0 66-67 37.28729040563736 38.0 38.0 38.0 37.0 38.0 68-69 37.293021328207395 38.0 38.0 38.0 37.0 38.0 70-71 37.30408257734757 38.0 38.0 38.0 37.0 38.0 72-73 37.276079828124566 38.0 38.0 38.0 37.0 38.0 74-75 37.277596453954104 38.0 38.0 38.0 37.0 38.0 76-77 37.28034669435617 38.0 38.0 38.0 37.0 38.0 78-79 37.266788094815624 38.0 38.0 38.0 37.0 38.0 80-81 37.262258753716964 38.0 38.0 38.0 37.0 38.0 82-83 37.26366511614688 38.0 38.0 38.0 37.0 38.0 84-85 37.247013781242174 38.0 38.0 38.0 37.0 38.0 86-87 37.23413039579087 38.0 38.0 38.0 37.0 38.0 88-89 37.21665727240092 38.0 38.0 38.0 37.0 38.0 90-91 37.2047062798633 38.0 38.0 38.0 36.5 38.0 92-93 37.19952818369606 38.0 38.0 38.0 36.0 38.0 94-95 37.16023951607189 38.0 38.0 38.0 36.0 38.0 96-97 37.17196729356003 38.0 38.0 38.0 36.0 38.0 98-99 37.15837252504341 38.0 38.0 38.0 36.0 38.0 100 35.60040939407728 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 4.0 18 4.0 19 14.0 20 48.0 21 116.0 22 317.0 23 851.0 24 1825.0 25 3514.0 26 6068.0 27 10159.0 28 15786.0 29 23139.0 30 32720.0 31 42139.0 32 54358.0 33 71962.0 34 107086.0 35 202091.0 36 783994.0 37 3957716.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.534480536087266 19.71596814474311 18.541691797246887 23.207859521922742 2 14.20836723030198 21.581204904799623 42.11169316981492 22.09873469508348 3 17.365928785785083 26.72925835603946 31.983994462835376 23.920818395340078 4 12.0925811516226 18.857146835918027 39.229731171636104 29.820540840823266 5 12.66932303907472 37.91729462547558 35.92181592889976 13.491566406549943 6 28.413637311409417 38.676585824476675 19.148187430230045 13.761589433883865 7 25.03282422306283 33.72933795842648 23.52386029799897 17.71397752051173 8 23.710492595940202 36.4149066158265 22.08460852453439 17.78999226369891 9 25.21607007733114 16.6763739106167 21.9618506253692 36.14570538668296 10-11 23.474612201822726 27.139737568054866 29.409271250497042 19.976378979625366 12-13 24.51290584279639 25.061466027564254 29.332999743503418 21.092628386135935 14-15 21.829844346282805 26.440102214734118 27.35870058794737 24.371352851035706 16-17 20.839490913566298 29.49852754402548 28.141843173511937 21.52013836889628 18-19 20.893838831700418 28.10167501864446 30.3652338174275 20.63925233222762 20-21 21.907037539132972 27.16046803038265 30.13452207395594 20.79797235652844 22-23 21.55087750751069 27.407889159086924 29.936750684592013 21.10448264881037 24-25 21.394668435428 27.50565469255182 30.154878388553435 20.944798483466748 26-27 21.23310905356425 27.683569344398627 30.14410743115896 20.939214170878152 28-29 20.800707107579765 27.563267334174057 30.28176139796519 21.354264160280987 30-31 21.474440217691676 27.272566663470226 30.332021848527518 20.920971270310577 32-33 21.053234554263174 27.71384165177381 29.994231902190055 21.23869189177296 34-35 21.146238389901036 27.749583166107232 30.326040845431606 20.77813759856012 36-37 21.404569740819223 27.56139875632943 29.924779987729806 21.109251515121542 38-39 21.075489918276002 27.453441253930123 30.1579728367636 21.313095991030277 40-41 21.312805938949815 27.27870857009339 30.191504159162353 21.216981331794443 42-43 21.545436640894067 27.309409105913616 29.88441363338975 21.260740619802565 44-45 21.330812439301216 27.66299794080817 29.64161269769386 21.364576922196754 46-47 21.61864470142812 27.452229130670315 29.18533078346202 21.74379538443955 48-49 21.522092998505705 27.517370600572384 29.197591188549367 21.76294521237255 50-51 21.354613646436434 27.83205595744161 29.02924919404059 21.784081202081364 52-53 21.576022969652136 27.913377296268838 28.918841795734163 21.591757938344863 54-55 21.534623216716536 28.0379357114071 28.61611895199604 21.81132211988032 56-57 21.82120506227854 28.19608103846291 28.220533748068753 21.762180151189796 58-59 21.362808681435336 28.486460578326962 28.721174143429423 21.42955659680828 60-61 21.708478875057164 28.753904726634065 28.169706559828523 21.36790983848025 62-63 21.448712478695374 28.885194745822062 28.145070918288123 21.52102185719444 64-65 21.365245227206927 28.86286652485878 28.180477190961266 21.591411056973026 66-67 21.530368794733967 28.821132178186748 28.04388673173141 21.604612295347874 68-69 21.558847938406736 28.632932759246504 28.12004546637831 21.68817383596845 70-71 21.558552720425855 28.245033611232827 28.285280621489623 21.911133046851695 72-73 21.755125180411795 27.96110532087925 28.42162267878407 21.862146819924888 74-75 21.65400204130443 28.07760073709163 28.28135413816597 21.987043083437975 76-77 21.697398168455006 28.032968984403155 28.220315971065713 22.049316876076126 78-79 21.758902017183747 28.054571124466765 28.157569295074968 22.02895756327452 80-81 21.71444521039259 28.05240668205774 28.19058073730995 22.04256737023972 82-83 21.857837477401567 28.021827507341516 28.22385410212406 21.896480913132855 84-85 22.020744903506518 28.013928919412205 28.04209842080522 21.923227756276056 86-87 21.786183683193823 28.017610741317352 28.169032217694745 22.02717335779408 88-89 21.88708177405036 27.964603912794843 28.091434823778382 22.056879489376417 90-91 21.9651089669591 28.017848267376134 28.06041578044046 21.9566269852243 92-93 22.016598400743565 27.992906058334636 28.019218249494383 21.971277291427416 94-95 21.85521753689784 28.077431120845326 28.033113804109743 22.034237538147092 96-97 21.92163108671659 28.227233680166535 28.060413583476063 21.79072164964081 98-99 22.986161318314355 30.081831229771467 28.294243684173733 18.637763767740452 100 29.101072467761256 41.21038894292742 29.68853858931132 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3027.0 1 2586.5 2 2360.5 3 2729.0 4 3515.5 5 4664.0 6 5310.0 7 5553.0 8 5487.5 9 5405.5 10 5750.5 11 7028.5 12 9220.0 13 14359.0 14 22385.0 15 29046.0 16 33359.5 17 34678.5 18 33700.5 19 31341.0 20 28750.5 21 27533.5 22 28622.0 23 33188.5 24 40591.5 25 50439.0 26 63214.5 27 77070.0 28 90724.0 29 105410.5 30 118631.0 31 130811.5 32 144178.0 33 157844.5 34 171033.0 35 183138.5 36 195434.5 37 205895.5 38 211360.5 39 214271.5 40 218919.0 41 223309.5 42 227568.0 43 242306.5 44 249466.5 45 245761.0 46 241220.5 47 232685.0 48 225812.5 49 217560.5 50 209104.0 51 200080.5 52 188531.0 53 175312.0 54 162538.0 55 149338.5 56 134671.0 57 119885.0 58 106121.0 59 91869.5 60 77141.0 61 63486.0 62 50598.0 63 39470.5 64 30790.5 65 23430.5 66 16934.0 67 12617.5 68 9668.5 69 7221.0 70 5326.0 71 3876.5 72 2840.5 73 2098.5 74 1521.5 75 1044.5 76 697.5 77 453.0 78 317.5 79 215.0 80 143.5 81 93.0 82 67.5 83 57.5 84 43.0 85 27.5 86 17.0 87 11.5 88 6.5 89 3.0 90 1.5 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.6345943693825507E-4 3 0.0 4 0.0 5 0.0075085939527402695 6 3.575520929876319E-4 7 0.0 8 3.763706241975072E-5 9 1.8818531209875364E-4 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.695415896822263E-4 26-27 9.422726995613438E-6 28-29 6.789635131609061E-4 30-31 2.739797466613206E-4 32-33 0.0015173982992241163 34-35 2.3832641471751407E-4 36-37 0.0014883801680160352 38-39 7.854844795539844E-4 40-41 7.840757354434379E-4 42-43 6.934860164984286E-5 44-45 1.2044390806757385E-4 46-47 5.500650910357725E-4 48-49 0.0017461738901954197 50-51 0.0017719416706159646 52-53 0.0018924131244165946 54-55 0.001464278758192559 56-57 0.003318471891724375 58-59 4.649086919329044E-4 60-61 5.6112440352475906E-5 62-63 0.002219775788985154 64-65 0.0025175096840398315 66-67 0.0033436615322886246 68-69 7.997015084280184E-4 70-71 0.005355455940566826 72-73 0.001250179326465269 74-75 0.004122154001411335 76-77 2.936264423122342E-4 78-79 0.0013494161245106258 80-81 0.0 82-83 4.022562823045316E-5 84-85 9.262612920446006E-4 86-87 0.0 88-89 1.4078243215448223E-5 90-91 0.0034528496898595966 92-93 5.539377980331127E-4 94-95 0.0 96-97 1.5158570777185987E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 889.0 20-21 2533.0 22-23 1606.0 24-25 1951.0 26-27 3270.0 28-29 6836.0 30-31 18938.0 32-33 25267.0 34-35 34080.0 36-37 48374.0 38-39 55426.0 40-41 53520.0 42-43 61783.0 44-45 72554.0 46-47 71345.0 48-49 64005.0 50-51 74555.0 52-53 57496.0 54-55 63055.0 56-57 63929.0 58-59 61420.0 60-61 63564.0 62-63 62224.0 64-65 65094.0 66-67 71628.0 68-69 72972.0 70-71 80058.0 72-73 62045.0 74-75 61237.0 76-77 62947.0 78-79 62826.0 80-81 62693.0 82-83 58698.0 84-85 58380.0 86-87 60111.0 88-89 61104.0 90-91 60699.0 92-93 59788.0 94-95 62683.0 96-97 148695.0 98-99 1017764.0 100-101 2155869.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.56367483630395 #Duplication Level Percentage of deduplicated Percentage of total 1 91.096534466265 79.76747322718182 2 6.407462575063261 11.221219388972521 3 1.5081354538624077 3.9617364747332866 4 0.4935902120365992 1.7288229131662038 5 0.2196637587314632 0.9617282971441081 6 0.10410425623761335 0.5469450745359384 7 0.05532525638173827 0.33911379320319757 8 0.03162183309643813 0.22151391287875064 9 0.01922652472447759 0.15151906432856826 >10 0.06209454716270941 0.8169337221071407 >50 0.0012917722925838392 0.07864656423000202 >100 8.867957877379192E-4 0.1598746193588565 >500 3.127417957008586E-5 0.016759510394760722 >1k 3.127417845008842E-5 0.02771343776486999 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 1.881853120987536E-5 3 0.0 0.0 0.0 0.0 1.881853120987536E-5 4 0.0 0.0 0.0 0.0 1.881853120987536E-5 5 0.0 0.0 0.0 0.0 1.881853120987536E-5 6 0.0 1.881853120987536E-5 0.0 0.0 1.881853120987536E-5 7 0.0 1.881853120987536E-5 0.0 0.0 1.881853120987536E-5 8 0.0 7.527412483950145E-5 0.0 1.881853120987536E-5 1.881853120987536E-5 9 0.0 1.1291118725925218E-4 0.0 1.881853120987536E-5 1.881853120987536E-5 10-11 0.0 1.1291118725925218E-4 0.0 1.881853120987536E-5 6.586485923456377E-5 12-13 0.0 1.1291118725925218E-4 0.0 1.881853120987536E-5 9.409265604937682E-5 14-15 0.0 1.3172971846912753E-4 0.0 1.881853120987536E-5 9.409265604937682E-5 16-17 0.0 1.3172971846912753E-4 0.0 1.881853120987536E-5 1.035019216543145E-4 18-19 0.0 1.5054824967900292E-4 0.0 1.881853120987536E-5 1.4113898407406523E-4 20-21 0.0 1.6936678088887828E-4 0.0 3.763706241975072E-5 1.6936678088887828E-4 22-23 0.0 1.6936678088887828E-4 0.0 5.645559362962609E-5 1.6936678088887828E-4 24-25 0.0 1.8818531209875364E-4 0.0 1.1291118725925218E-4 2.07003843308629E-4 26-27 0.0 2.07003843308629E-4 0.0 1.6936678088887825E-4 2.07003843308629E-4 28-29 0.0 2.07003843308629E-4 0.0 6.021929987160116E-4 2.07003843308629E-4 30-31 0.0 2.2582237451850435E-4 0.0 0.002239405213975168 2.07003843308629E-4 32-33 0.0 2.2582237451850435E-4 0.0 0.005993702190345304 2.2582237451850435E-4 34-35 0.0 2.728687025431928E-4 0.0 0.011084114882616588 2.2582237451850435E-4 36-37 0.0 3.1991503056788117E-4 0.0 0.01834806792962848 2.2582237451850435E-4 38-39 0.0 3.3873356177775655E-4 0.0 0.028613576704615493 2.2582237451850435E-4 40-41 0.0 3.7637062419750727E-4 0.0 0.039509506275133326 2.2582237451850435E-4 42-43 0.0 3.951891554073826E-4 0.0 0.04953978340999689 2.6345943693825507E-4 44-45 0.0 4.516447490370087E-4 0.0 0.06154600632189738 2.916872337530681E-4 46-47 0.0 4.892818114567595E-4 0.0 0.07502948393377307 3.010964993580058E-4 48-49 0.0 4.892818114567595E-4 0.0 0.0879484056093525 3.010964993580058E-4 50-51 0.0 5.363281394814479E-4 0.0 0.09974762467794437 3.1991503056788117E-4 52-53 0.0 5.457374050863856E-4 0.0 0.11129279357520289 3.1991503056788117E-4 54-55 0.0 5.457374050863856E-4 0.0 0.1237036149081157 3.1991503056788117E-4 56-57 0.0 5.457374050863856E-4 0.0 0.1353616949926335 3.1991503056788117E-4 58-59 0.0 5.457374050863856E-4 0.0 0.1466998600465834 3.1991503056788117E-4 60-61 0.0 5.457374050863856E-4 0.0 0.15754874328907653 3.1991503056788117E-4 62-63 0.0 5.551466706913233E-4 0.0 0.16740965364305121 3.1991503056788117E-4 64-65 0.0 6.774671235555131E-4 0.0 0.17754343269956913 3.1991503056788117E-4 66-67 0.0 6.774671235555131E-4 0.0 0.1873572967255191 3.1991503056788117E-4 68-69 0.0 7.245134515802015E-4 0.0 0.1965407399559383 3.1991503056788117E-4 70-71 0.0 7.339227171851392E-4 0.0 0.20442570453287606 3.3873356177775655E-4 72-73 0.0 7.339227171851392E-4 0.0 0.21074873101939418 3.3873356177775655E-4 74-75 0.0 7.433319827900768E-4 0.0 0.21517108585371492 3.7637062419750727E-4 76-77 0.0 7.621505139999523E-4 0.0 0.21963107775045537 4.14007686617258E-4 78-79 0.0 7.715597796048899E-4 0.0 0.22264204274403543 4.14007686617258E-4 80-81 0.0 7.809690452098275E-4 0.0 0.22379938241344277 4.14007686617258E-4 82-83 0.0 7.997875764197029E-4 0.0 0.2246085792554674 4.14007686617258E-4 84-85 0.0 8.186061076295784E-4 0.0 0.2249849498796649 4.516447490370087E-4 86-87 0.0 8.28015373234516E-4 0.0 0.22513549812934391 4.516447490370087E-4 88 0.0 8.468339044443913E-4 0.0 0.22516372592615871 4.516447490370087E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8940 0.0 48.382595 1 CTTATAC 5760 0.0 34.658688 1 GTATCAA 16785 0.0 33.889587 1 TATACAC 7445 0.0 29.614418 3 ATCAACG 21145 0.0 28.62691 3 TCAACGC 21555 0.0 28.175383 4 TATCAAC 21855 0.0 27.935364 2 CAACGCA 21955 0.0 27.534243 5 AACGCAG 22465 0.0 26.97876 6 TTATACA 8625 0.0 24.58679 2 ACGCAGA 25225 0.0 23.9792 7 CGCAGAG 25715 0.0 23.537865 8 TGGTATC 3980 0.0 23.468107 2 ACACATC 8925 0.0 23.219824 6 GTGGTAT 3840 0.0 22.653418 1 ACATCTC 9080 0.0 22.602722 8 TACACAT 9855 0.0 22.087595 5 GCAGAGT 28470 0.0 21.147503 9 CACATCT 9695 0.0 21.044888 7 GGACCGA 1030 0.0 21.01518 6 >>END_MODULE