##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140038_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11297769 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.64965445832713 34.0 31.0 34.0 31.0 34.0 2 32.80593009115339 34.0 31.0 34.0 31.0 34.0 3 32.85135428065488 34.0 31.0 34.0 31.0 34.0 4 36.31812643717534 37.0 37.0 37.0 35.0 37.0 5 36.25180555559243 37.0 37.0 37.0 35.0 37.0 6 36.288381183931094 37.0 37.0 37.0 35.0 37.0 7 36.24377051787835 37.0 37.0 37.0 35.0 37.0 8 36.22439412595531 37.0 37.0 37.0 35.0 37.0 9 37.89891260832116 39.0 38.0 39.0 35.0 39.0 10-11 37.87171037927931 39.0 38.0 39.0 35.0 39.0 12-13 37.84420393088228 39.0 38.0 39.0 35.0 39.0 14-15 39.25353775599413 41.0 39.0 41.0 36.0 41.0 16-17 39.238655924014736 41.0 39.0 41.0 36.0 41.0 18-19 39.27019347802208 41.0 39.0 41.0 36.0 41.0 20-21 39.1900831608031 41.0 39.0 41.0 36.0 41.0 22-23 39.186829159814664 40.0 39.0 41.0 36.0 41.0 24-25 39.092968516391835 40.0 39.0 41.0 35.5 41.0 26-27 38.94922305368702 40.0 39.0 41.0 35.0 41.0 28-29 38.81724778293541 40.0 38.0 41.0 35.0 41.0 30-31 38.697399344343495 40.0 38.0 41.0 35.0 41.0 32-33 38.59790557364267 40.0 38.0 41.0 35.0 41.0 34-35 38.45094848151195 40.0 38.0 41.0 34.5 41.0 36-37 38.591684162824095 40.0 38.0 41.0 35.0 41.0 38-39 38.65361238977867 40.0 38.0 41.0 35.0 41.0 40-41 38.63295091995725 40.0 38.0 41.0 35.0 41.0 42-43 38.59475513934282 40.0 38.0 41.0 34.5 41.0 44-45 38.51409965398216 40.0 38.0 41.0 34.0 41.0 46-47 38.444667034709646 40.0 38.0 41.0 34.0 41.0 48-49 38.35014895479188 40.0 38.0 41.0 34.0 41.0 50-51 38.24897398799525 40.0 38.0 41.0 34.0 41.0 52-53 38.13127054246374 40.0 37.0 41.0 33.5 41.0 54-55 37.982639456500635 40.0 37.0 41.0 33.0 41.0 56-57 37.82668760950105 40.0 36.5 41.0 33.0 41.0 58-59 37.632952634920144 39.0 36.0 41.0 33.0 41.0 60-61 37.394774077718836 39.0 36.0 41.0 33.0 41.0 62-63 37.182517400804784 39.0 35.0 40.0 32.0 41.0 64-65 36.9324740878389 38.0 35.0 40.0 32.0 41.0 66-67 36.646648079959775 38.0 35.0 40.0 32.0 41.0 68-69 36.284558099380334 37.0 35.0 40.0 31.0 41.0 70-71 36.00487766628194 36.5 35.0 39.0 31.0 41.0 72-73 35.67889686010274 36.0 34.0 39.0 31.0 40.0 74-75 35.35133728901439 36.0 34.0 38.5 31.0 40.0 76-77 34.337040729279444 35.0 33.5 37.0 29.5 39.0 78-79 34.63538794907382 35.0 34.0 37.0 30.0 39.0 80-81 34.48090808478007 35.0 34.0 36.5 30.0 39.0 82-83 34.21878813011755 35.0 34.0 36.0 30.0 37.5 84-85 33.96555556530613 35.0 34.0 36.0 30.0 37.0 86-87 33.751708976336914 35.0 33.0 35.0 30.0 37.0 88-89 33.58159504896626 35.0 33.0 35.0 30.0 36.0 90-91 33.40376044368516 35.0 33.0 35.0 29.5 36.0 92-93 33.2728640121765 34.5 33.0 35.0 29.0 36.0 94-95 33.18921356942239 34.0 33.0 35.0 29.0 35.0 96-97 33.17617865776273 34.0 33.0 35.0 29.0 35.0 98-99 33.188515636598396 34.0 33.0 35.0 29.5 35.0 100-101 32.18710282071058 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 2.0 19 5.0 20 60.0 21 298.0 22 1417.0 23 4823.0 24 12251.0 25 25297.0 26 45054.0 27 70536.0 28 101127.0 29 135294.0 30 174460.0 31 218046.0 32 276354.0 33 362675.0 34 513328.0 35 753740.0 36 1309957.0 37 2648702.0 38 3247486.0 39 1345529.0 40 51326.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.196508620418776 21.00436820756381 15.812449342874684 23.986673829142727 2 13.827506902126348 21.327161010193876 41.34509339347737 23.50023869420241 3 17.166442330339734 26.157031534279024 31.085809950619453 25.590716184761785 4 12.16391699350854 18.620688495346027 38.4972003759681 30.718194135177335 5 13.228921568497285 37.81630691864916 35.28931242973724 13.665459083116321 6 29.965040000375293 37.98531373760607 18.484835368823703 13.564810893194931 7 26.5480821921567 32.95587828003918 22.562029724629703 17.934009803174416 8 24.836717762595427 36.62006189009529 20.604961917702514 17.938258429606766 9 25.557630006419853 17.10717399160843 21.06088379041915 36.27431221155256 10-11 24.27706731483511 27.03367297384627 28.364760359438385 20.324499351880238 12-13 25.170019194498455 24.469518029157705 28.68910351632714 21.6713592600167 14-15 22.281633601783586 25.879777504880202 26.58375794830906 25.25483094502715 16-17 21.610940761455584 29.117894845294757 27.194176537869108 22.076987855380548 18-19 21.612273326908465 27.987678628203376 29.322402442677177 21.077645602210985 20-21 22.518553177454866 27.042385272847508 29.23097023020625 21.208091319491377 22-23 22.234104543228376 26.97653749382272 29.125721384039334 21.66363657890957 24-25 21.964107938716474 27.18817953282386 29.196350451213004 21.65136207724666 26-27 21.918613872937495 27.334495974995864 29.079016565141114 21.66787358692552 28-29 21.746018359931096 27.393010614995056 29.1654276496844 21.695543375389448 30-31 22.11636058006747 27.172122572524675 29.08352368909057 21.62799315831728 32-33 21.889902848897663 27.40028501461636 28.950101039286714 21.759711097199258 34-35 21.98700026845369 27.444996017847618 29.014958925513657 21.553044788185037 36-37 22.01010078669623 27.372201597031765 28.93728448725506 21.680413129016944 38-39 21.855210720005143 27.45362427822003 28.966097710964643 21.72506729081018 40-41 22.103428894672984 27.323877895135396 28.815106720151668 21.75758649003995 42-43 22.0252839933751 27.40925091613083 28.63317698891122 21.93228810158285 44-45 22.139036754465728 27.55829877737718 28.353940298674924 21.94872416948217 46-47 22.22212418554547 27.55843335512379 27.996561327444258 22.222881131886478 48-49 22.157706098566827 27.726084246069878 27.937290571580487 22.178919083782805 50-51 22.14831534772012 27.78503800796678 27.85941755370514 22.207229090607957 52-53 22.31185622090744 27.744852719610126 27.75842877044693 22.184862289035504 54-55 22.26124985229709 27.672806166240814 27.73683354804527 22.329110433416822 56-57 22.33881016519779 27.775616094614364 27.661666238064946 22.2239075021229 58-59 22.242823295874672 27.877884926015394 27.755130471361788 22.124161306748142 60-61 22.419551557709077 27.80484766871117 27.662028707142568 22.113572066437186 62-63 22.317673488608776 27.913520309342466 27.566130613346772 22.20267558870199 64-65 22.28742043200171 27.866935943267585 27.580498904902573 22.265144719828132 66-67 22.39665617304762 27.842448408281427 27.459200116066658 22.301695302604298 68-69 22.304915541317914 27.78979365201976 27.540436483718008 22.364854322944318 70-71 22.295373545371806 27.603542351778653 27.607509970445363 22.493574132404177 72-73 22.352014577173467 27.654569645966504 27.56168813550045 22.43172764135958 74-75 22.205781180242923 27.765346169497825 27.558397056013995 22.47047559424526 76-77 22.34828720711267 27.662039499320528 27.490631557810058 22.499041735756744 78-79 22.316076828843524 27.67396380515535 27.474776485132836 22.535182880868295 80-81 22.345715416207753 27.694288119429533 27.47635650951525 22.48363995484746 82-83 22.353706212315753 27.648132394604392 27.601419174373977 22.396742218705885 84-85 22.456290872922345 27.628511946460364 27.51528819852322 22.399908982094065 86-87 22.278879002001418 27.66100333726605 27.588211769134503 22.47190589159803 88-89 22.3357987213319 27.569448536771272 27.578832975498386 22.51591976639844 90-91 22.413029417496436 27.54256168870747 27.591897230130503 22.452511663665593 92-93 22.426591186625167 27.441856008902256 27.647505666874313 22.484047137598267 94-95 22.2647442926678 27.51643596295288 27.69220277870035 22.52661696567897 96-97 22.249458168543462 27.571092380955665 27.68548456491634 22.493964885584536 98-99 22.453917672851674 28.167823844649902 27.713144338597957 21.66511414390047 100-101 22.988979883776185 30.80718621521143 24.934994092165045 21.26883980884734 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2931.0 1 2511.5 2 3041.0 3 4226.0 4 5646.5 5 8490.0 6 11004.0 7 13939.5 8 16757.5 9 17528.5 10 16149.5 11 14635.5 12 16108.0 13 21917.5 14 36246.5 15 55896.0 16 71415.5 17 79384.5 18 80107.0 19 75417.5 20 67965.5 21 59986.0 22 54592.5 23 55342.5 24 62136.0 25 75300.0 26 92910.5 27 112908.5 28 137329.5 29 164074.5 30 188910.5 31 214555.0 32 241477.0 33 267532.5 34 291721.0 35 312566.5 36 336660.0 37 360879.5 38 378043.5 39 389032.0 40 401623.5 41 416899.0 42 426780.0 43 435402.5 44 445885.0 45 456107.0 46 463657.5 47 466001.5 48 461186.0 49 451751.5 50 443789.5 51 434492.5 52 417592.0 53 397280.0 54 377199.5 55 352724.0 56 325598.5 57 295581.0 58 263460.5 59 229670.5 60 192117.5 61 156811.0 62 125096.5 63 96781.0 64 72856.5 65 54121.5 66 40892.5 67 31495.5 68 24202.5 69 17682.5 70 12593.0 71 9149.0 72 6541.5 73 4498.5 74 3013.0 75 1987.5 76 1277.0 77 813.5 78 497.5 79 290.5 80 197.0 81 135.5 82 102.0 83 77.5 84 54.5 85 39.5 86 30.0 87 25.0 88 17.0 89 8.5 90 4.5 91 3.0 92 2.5 93 3.0 94 2.5 95 2.0 96 2.0 97 1.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007859958899850049 3 0.0 4 1.770261013479741E-5 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 7.833404984647854E-4 12-13 4.425652533699352E-6 14-15 7.346583205940925E-4 16-17 8.054687611332821E-4 18-19 8.851305067398704E-6 20-21 4.5585538496876614E-4 22-23 0.001301279427670751 24-25 0.004400437511507432 26-27 0.016478843574012726 28-29 0.32251384792892906 30-31 0.30960455496158457 32-33 0.31834505905560195 34-35 0.1832943127951946 36-37 0.04438456888433179 38-39 0.0345213470344804 40-41 0.03083328654763177 42-43 0.02647725461139819 44-45 0.014280486033077763 46-47 0.007327446641631069 48-49 0.0055783523178569525 50-51 0.0021647873980257517 52-53 0.0019808927655129618 54-55 0.0014248360143278055 56-57 6.045690133907684E-4 58-59 0.0021169158993700125 60-61 0.0024497830146508336 62-63 3.0755965255878967E-4 64-65 1.9513725954836632E-4 66-67 0.00783449149275754 68-69 0.007025017377607438 70-71 0.00900104663572615 72-73 0.009629572056823528 74-75 0.007600391081353388 76-77 0.004816952361985694 78-79 5.038620490032643E-4 80-81 7.532953419576076E-4 82-83 7.014606108768373E-4 84-85 0.0 86-87 0.0016819766724412665 88-89 0.0013965757325550658 90-91 0.0010359665723515027 92-93 0.011349694183278811 94-95 9.496087730556107E-5 96-97 5.442348656447387E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 208.0 20-21 677.0 22-23 1570.0 24-25 3904.0 26-27 5908.0 28-29 9450.0 30-31 20629.0 32-33 27822.0 34-35 41579.0 36-37 57104.0 38-39 68115.0 40-41 72682.0 42-43 87503.0 44-45 105863.0 46-47 104962.0 48-49 91302.0 50-51 79286.0 52-53 76674.0 54-55 82795.0 56-57 87310.0 58-59 86638.0 60-61 85533.0 62-63 85099.0 64-65 92098.0 66-67 98047.0 68-69 96745.0 70-71 94637.0 72-73 91206.0 74-75 93983.0 76-77 95365.0 78-79 101224.0 80-81 102851.0 82-83 101125.0 84-85 103373.0 86-87 108423.0 88-89 117537.0 90-91 126730.0 92-93 131420.0 94-95 147601.0 96-97 220632.0 98-99 958629.0 100-101 7133530.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.79210171188221 #Duplication Level Percentage of deduplicated Percentage of total 1 88.653087252247 73.39775416860402 2 7.635628215983395 12.6433941578363 3 1.9433740465697407 4.8268806518350225 4 0.7937853279792206 2.628766224458217 5 0.362703599204109 1.5014496638286174 6 0.1991638184933512 0.989351467081703 7 0.12380439309103465 0.7175018133619552 8 0.07263404116945472 0.48108199393972284 9 0.049621071465222516 0.36974095162211507 >10 0.16175845384631152 2.079543851835377 >50 0.0035355265733510713 0.19699259344955733 >100 8.467721494940988E-4 0.11877896234172249 >500 3.832111834892151E-5 0.02549239413920673 >1k 1.916010994538821E-5 0.023271105666576284 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 8.851305067398704E-6 0.0 2 0.0 4.425652533699352E-5 0.0 8.851305067398704E-6 0.0 3 0.0 4.425652533699352E-5 0.0 1.770261013479741E-5 0.0 4 0.0 7.081044053918964E-5 0.0 1.770261013479741E-5 0.0 5 0.0 7.966174560658835E-5 0.0 1.770261013479741E-5 0.0 6 0.0 7.966174560658835E-5 0.0 2.6553915202196113E-5 0.0 7 0.0 7.966174560658835E-5 0.0 4.425652533699352E-5 0.0 8 0.0 1.1506696587618316E-4 0.0 4.425652533699352E-5 0.0 9 0.0 1.947287114827715E-4 0.0 5.310783040439223E-5 0.0 10-11 0.0 1.947287114827715E-4 0.0 5.310783040439223E-5 0.0 12-13 0.0 1.947287114827715E-4 0.0 7.523609307288899E-5 0.0 14-15 0.0 2.25708279218667E-4 0.0 8.851305067398704E-5 0.0 16-17 0.0 2.3013393175236633E-4 0.0 1.0621566080878445E-4 0.0 18-19 0.0 2.655391520219612E-4 0.0 1.2391827094358188E-4 0.0 20-21 4.425652533699352E-6 2.965187197578566E-4 0.0 1.3719522854467993E-4 0.0 22-23 8.851305067398704E-6 3.452008976285495E-4 0.0 1.4162088107837927E-4 0.0 24-25 8.851305067398704E-6 3.717548128307456E-4 0.0 1.593234912131767E-4 0.0 26-27 8.851305067398704E-6 3.89457422965543E-4 0.0 2.124313216175689E-4 0.0 28-29 8.851305067398704E-6 3.9388307549924237E-4 0.0 5.045243888417262E-4 0.0 30-31 8.851305067398704E-6 4.51416558437334E-4 0.0 0.0012126287942336225 0.0 32-33 8.851305067398704E-6 4.735448211058307E-4 0.0 0.0027394789183598995 0.0 34-35 8.851305067398704E-6 5.886117869820139E-4 0.0 0.004762002126260503 0.0 36-37 8.851305067398704E-6 7.169557104592952E-4 0.0 0.00792634368785554 0.0 38-39 8.851305067398704E-6 7.78914845931086E-4 0.0 0.013037972364278293 0.0 40-41 8.851305067398704E-6 8.497252864702756E-4 0.0 0.018202708871105436 0.0 42-43 8.851305067398704E-6 8.807048542061711E-4 0.0 0.023216973191786804 0.0 44-45 8.851305067398704E-6 0.001004623125149753 0.0 0.029430589349100693 0.0 46-47 8.851305067398704E-6 0.0011064131334248381 0.0 0.03551143593040361 0.0 48-49 8.851305067398704E-6 0.0011152644384922368 0.0 0.042158766036020034 0.0 50-51 8.851305067398704E-6 0.0012303314043684201 0.0 0.04887690658217565 0.0 52-53 8.851305067398704E-6 0.0012480340145032175 0.0 0.055046266214152546 0.0 54-55 8.851305067398704E-6 0.0012524596670369168 0.0 0.061963561124324634 0.0 56-57 8.851305067398704E-6 0.0012568853195706162 0.0 0.06896494343263701 0.0 58-59 8.851305067398704E-6 0.0012613109721043155 0.0 0.07493957435313114 0.0 60-61 8.851305067398704E-6 0.001279013582239113 0.0 0.08055572741839562 0.0 62-63 8.851305067398704E-6 0.0013099931499750083 0.0 0.08603468525511541 0.0 64-65 8.851305067398704E-6 0.0015357014291936754 0.0 0.09168624354064948 0.0 66-67 8.851305067398704E-6 0.0015534040393284728 0.0 0.0977803670795535 0.0 68-69 8.851305067398704E-6 0.001593234912131767 0.0 0.10398955758433368 0.0 70-71 8.851305067398704E-6 0.001619788827333963 0.0 0.10955260281919377 0.0 72-73 8.851305067398704E-6 0.0016330657849350611 0.0 0.1133940692184448 0.0 74-75 8.851305067398704E-6 0.0016817479628057539 0.0 0.11689476037260099 0.0 76-77 8.851305067398704E-6 0.0017525584033449438 0.0 0.11982896800244366 0.0 78-79 8.851305067398704E-6 0.0018233688438841333 0.0 0.12254189300560137 0.0 80-81 8.851305067398704E-6 0.0018233688438841333 0.0 0.12378107571503719 0.0 82-83 8.851305067398704E-6 0.0018277944964178326 0.0 0.12418823574813753 0.0 84-85 8.851305067398704E-6 0.001832220148951532 0.0 0.12445820055269319 0.0 86-87 8.851305067398704E-6 0.0018410714540189306 0.0 0.12453786229829977 0.0 88-89 8.851305067398704E-6 0.0019915436401647087 0.0 0.12453786229829977 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16920 0.0 52.00654 1 GTATCAA 30535 0.0 37.241646 1 ATCAACG 39265 0.0 28.403719 3 TCAACGC 39535 0.0 28.242714 4 TATCAAC 40140 0.0 28.010311 2 CAACGCA 40325 0.0 27.668432 5 AACGCAG 41325 0.0 26.988546 6 GTGGTAT 7895 0.0 24.557339 1 ACGCAGA 47805 0.0 23.321278 7 TGGTATC 7980 0.0 23.223103 2 CGCAGAG 48235 0.0 23.069014 8 GCAGAGT 54960 0.0 20.114046 9 GTACATG 38120 0.0 20.018599 1 GAGTACT 31845 0.0 19.70891 12-13 TACATGG 38055 0.0 19.591679 2 AGAGTAC 49935 0.0 19.001387 10-11 ACATGGG 38580 0.0 18.702589 3 CAGAGTA 53530 0.0 18.360895 10-11 AGTACTT 34400 0.0 17.815842 12-13 GTACTTT 35225 0.0 17.806387 14-15 >>END_MODULE