##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140037_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10713396 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.64840130991144 34.0 31.0 34.0 31.0 34.0 2 32.80371042011328 34.0 31.0 34.0 31.0 34.0 3 32.84904357124482 34.0 31.0 34.0 31.0 34.0 4 36.32009542072374 37.0 37.0 37.0 35.0 37.0 5 36.25290860153027 37.0 37.0 37.0 35.0 37.0 6 36.289268874220646 37.0 37.0 37.0 35.0 37.0 7 36.24463624792736 37.0 37.0 37.0 35.0 37.0 8 36.224077780752246 37.0 37.0 37.0 35.0 37.0 9 37.90158153399725 39.0 38.0 39.0 35.0 39.0 10-11 37.87193491214177 39.0 38.0 39.0 35.0 39.0 12-13 37.84683736137449 39.0 38.0 39.0 35.0 39.0 14-15 39.258195253867214 41.0 39.0 41.0 36.0 41.0 16-17 39.24277045299175 41.0 39.0 41.0 36.0 41.0 18-19 39.26998754643252 41.0 39.0 41.0 36.0 41.0 20-21 39.18972710605382 40.5 39.0 41.0 36.0 41.0 22-23 39.18689665610434 40.0 39.0 41.0 36.0 41.0 24-25 39.09565104033618 40.0 39.0 41.0 35.5 41.0 26-27 38.955909173258135 40.0 39.0 41.0 35.0 41.0 28-29 38.826219139989675 40.0 38.0 41.0 35.0 41.0 30-31 38.707156916802404 40.0 38.0 41.0 35.0 41.0 32-33 38.611247563651325 40.0 38.0 41.0 35.0 41.0 34-35 38.466993332687835 40.0 38.0 41.0 34.5 41.0 36-37 38.611705830391955 40.0 38.0 41.0 35.0 41.0 38-39 38.67250418256166 40.0 38.0 41.0 35.0 41.0 40-41 38.65288406726458 40.0 38.0 41.0 35.0 41.0 42-43 38.61586139837448 40.0 38.0 41.0 35.0 41.0 44-45 38.53952751363299 40.0 38.0 41.0 34.0 41.0 46-47 38.47043528294757 40.0 38.0 41.0 34.0 41.0 48-49 38.37896101935296 40.0 38.0 41.0 34.0 41.0 50-51 38.282170184610955 40.0 38.0 41.0 34.0 41.0 52-53 38.17060001923171 40.0 37.0 41.0 33.5 41.0 54-55 38.02625346120024 40.0 37.0 41.0 33.0 41.0 56-57 37.87520611502951 40.0 37.0 41.0 33.0 41.0 58-59 37.6864351701219 39.0 36.0 41.0 33.0 41.0 60-61 37.45632574641333 39.0 36.0 41.0 33.0 41.0 62-63 37.25114826338218 39.0 35.0 40.0 32.5 41.0 64-65 37.00883115847289 38.0 35.0 40.0 32.0 41.0 66-67 36.72527289946167 38.0 35.0 40.0 32.0 41.0 68-69 36.3658969592948 37.0 35.0 40.0 31.0 41.0 70-71 36.08581076252167 37.0 35.0 39.0 31.0 41.0 72-73 35.7576049762452 36.0 34.5 39.0 31.0 40.0 74-75 35.42567628088786 36.0 34.0 38.5 31.0 40.0 76-77 34.40605446040537 35.0 33.5 37.0 29.5 39.0 78-79 34.70090436800743 35.0 34.0 37.0 30.0 39.0 80-81 34.538159286696 35.0 34.0 37.0 30.0 39.0 82-83 34.264496070147764 35.0 34.0 36.0 30.0 38.0 84-85 34.00550317208871 35.0 34.0 36.0 30.0 37.0 86-87 33.78231129261013 35.0 33.5 35.0 30.0 37.0 88-89 33.60198128567699 35.0 33.0 35.0 30.0 36.5 90-91 33.41606729152299 35.0 33.0 35.0 29.5 36.0 92-93 33.282084802972136 34.5 33.0 35.0 29.0 36.0 94-95 33.193488303314716 34.0 33.0 35.0 29.0 35.5 96-97 33.177422243568 34.0 33.0 35.0 29.0 35.0 98-99 33.189820746851005 34.0 33.0 35.0 29.5 35.0 100-101 32.191478841642066 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 1.0 16 0.0 17 1.0 18 0.0 19 5.0 20 39.0 21 218.0 22 1231.0 23 4077.0 24 10396.0 25 22186.0 26 39607.0 27 63823.0 28 92968.0 29 125831.0 30 163242.0 31 206559.0 32 263647.0 33 344927.0 34 486421.0 35 711436.0 36 1229595.0 37 2486824.0 38 3135848.0 39 1277153.0 40 47360.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.84587109446902 21.178718680799253 15.83189868086646 24.14351154386527 2 13.711875711493915 21.367664582340527 41.445741631618034 23.474718074547525 3 17.034150515858837 26.07816419742162 31.25632619199365 25.63135909472589 4 12.032742568110775 18.640359781443657 38.69516408107124 30.63173356937433 5 13.069702641440678 37.84417191336902 35.5915808582078 13.494544586982505 6 29.9105717738801 38.23501903598075 18.423177860689552 13.431231329449597 7 26.377023681379836 32.964029332995814 22.705620141363205 17.95332684426115 8 24.55965410034316 36.95928909936681 20.716586972048827 17.764469828241204 9 25.36429158410648 17.06883606281332 21.195212050408667 36.37166030267153 10-11 24.122871456160606 27.136113862102373 28.55882542370192 20.1821892580351 12-13 24.980431041660367 24.535394752513582 28.859065790156546 21.6251084156695 14-15 21.998940569199032 26.005362493349388 26.717505343824964 25.278191593626616 16-17 21.449830691962422 29.247413941887068 27.37444990172508 21.928305464425428 18-19 21.42861543223371 28.17055920840772 29.422982110057745 20.97784324930083 20-21 22.30812951774446 27.243188064184242 29.37377964076283 21.074902777308463 22-23 21.97897483351284 27.162358674077247 29.277953914534066 21.58071257787585 24-25 21.76973990709237 27.351504117528062 29.334928868747372 21.543827106632197 26-27 21.750001529645676 27.502095147510857 29.22877320034617 21.519130122497295 28-29 21.543001468961815 27.577294869639836 29.294336767348376 21.58536689404997 30-31 21.945615312578003 27.360610911656902 29.252101463282802 21.44167231248229 32-33 21.658890180660503 27.553747075296915 29.121895654209716 21.66546708983287 34-35 21.813261641490257 27.61816844036818 29.176114979355326 21.39245493878623 36-37 21.80072985290759 27.522438542931443 29.109386991235358 21.567444612925605 38-39 21.64457978627963 27.630610980584237 29.157400608089397 21.567408625046745 40-41 21.89788292875523 27.52193572800194 29.005038754805927 21.575142588436904 42-43 21.821878674189627 27.61761094356036 28.776492181932262 21.78401820031775 44-45 21.919476750733658 27.744369114904956 28.549916456141954 21.78623767821943 46-47 22.009440515596637 27.71768654452168 28.2048094418067 22.068063498074984 48-49 21.96009700597484 27.87468651564531 28.17975394899343 21.98546252938642 50-51 21.94454629175424 27.997878811746485 28.044370609083842 22.013204287415437 52-53 22.144308648206255 27.910870319228152 27.932930880932556 22.011890151633036 54-55 22.09265939755062 27.811837229077103 27.971955995607335 22.123547377764947 56-57 22.108409402774647 27.95147558325219 27.88845401900985 22.051660994963314 58-59 22.033966726154105 28.02970459951849 27.987412641074073 21.94891603325333 60-61 22.184301453287954 28.027267786475157 27.880827605267065 21.90760315496982 62-63 22.108735506530834 28.12370638247556 27.79125775753429 21.97630035345932 64-65 22.06902377957004 28.061894518968895 27.799684673183165 22.0693970282779 66-67 22.16081217604024 28.020711140573408 27.694767687560347 22.12370899582601 68-69 22.10316018304773 27.967133599217348 27.79711188597527 22.132594331759655 70-71 22.09234796034389 27.789832882449883 27.832706693219443 22.285112463986785 72-73 22.138426915756444 27.857430200042906 27.790942094050568 22.21320079015009 74-75 22.020681589102033 27.924486247668177 27.784143233608592 22.270688929621198 76-77 22.140299814619326 27.86436612366416 27.72289198302822 22.272442078688297 78-79 22.090217321948693 27.905081390134328 27.685496981739455 22.319204306177525 80-81 22.138224344042836 27.888642791302924 27.707157647812668 22.265975216841564 82-83 22.129999220195412 27.84967938211016 27.81989302733625 22.200428370358175 84-85 22.23294399718829 27.81442243058733 27.7769039511848 22.17572962103958 86-87 22.065634909948056 27.84433543322381 27.822389568078158 22.26764008874997 88-89 22.14332899957802 27.774124269498678 27.79064370660791 22.29190302431539 90-91 22.16665086799658 27.770266726461024 27.856620091866457 22.20646231367594 92-93 22.213506365399624 27.66496967835864 27.877602274704373 22.24392168153736 94-95 22.055873194819725 27.75563784389351 27.913129245200118 22.275359716086644 96-97 22.01316245420886 27.77365304203871 27.955533378395852 22.257651125356578 98-99 22.2322576693626 28.359124388766183 27.997867964773942 21.41074997709728 100-101 22.76938852561852 31.061768858188422 25.212002661969535 20.956839954223526 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2780.0 1 2321.5 2 2672.0 3 3702.5 4 4997.0 5 7605.5 6 9941.0 7 12690.5 8 15282.0 9 15923.0 10 14698.0 11 13416.0 12 14905.5 13 20441.5 14 33867.5 15 52098.0 16 66261.5 17 73486.0 18 74324.5 19 70269.5 20 63447.5 21 55961.5 22 51610.5 23 53357.0 24 60946.0 25 74756.0 26 93190.0 27 113547.0 28 135975.5 29 159708.0 30 182108.0 31 205147.0 32 230505.5 33 256822.5 34 281837.5 35 303375.5 36 326642.0 37 348478.0 38 365400.0 39 379239.0 40 394048.0 41 408739.0 42 417855.5 43 425837.5 44 433677.0 45 440581.5 46 445377.0 47 445971.5 48 440273.0 49 429527.0 50 418846.0 51 404606.0 52 383501.0 53 360652.0 54 338381.5 55 314705.0 56 289825.0 57 262842.5 58 233575.0 59 202146.5 60 168892.0 61 137930.5 62 109642.5 63 84797.0 64 63497.0 65 46961.0 66 35988.5 67 27967.5 68 21436.0 69 15818.5 70 11477.0 71 8231.0 72 5728.0 73 4006.5 74 2763.5 75 1832.5 76 1161.5 77 739.0 78 476.5 79 312.5 80 210.5 81 137.0 82 87.0 83 55.0 84 40.0 85 31.5 86 23.5 87 14.5 88 4.5 89 2.0 90 3.5 91 4.0 92 3.5 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.008410031702365898 3 0.0 4 2.8002325313094E-5 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 8.02733325642028E-4 12-13 0.0 14-15 8.96074410019008E-4 16-17 7.747310003289339E-4 18-19 1.8668216875396E-5 20-21 5.18057839430913E-4 22-23 0.0012649013311616239 24-25 0.0043836086090151645 26-27 0.016788253471525953 28-29 0.32080041521174657 30-31 0.3084053363627553 32-33 0.3167209296603984 34-35 0.18284738100835352 36-37 0.04446629338441469 38-39 0.03416642692306853 40-41 0.030108527164333106 42-43 0.026202381914198557 44-45 0.013604451140066568 46-47 0.0069489838468156425 48-49 0.004940578804847828 50-51 0.0018409298307702864 52-53 0.0015084345546374541 54-55 0.0011509034870003179 56-57 4.1719114461936116E-4 58-59 0.00209788333829764 60-61 0.001908299042561378 62-63 2.0332889016261982E-4 64-65 1.3142542863352145E-4 66-67 0.007984531336659354 68-69 0.007171883261022646 70-71 0.00956565543611494 72-73 0.010053261546569305 74-75 0.007981661018360795 76-77 0.005060535122115717 78-79 3.875598674680056E-4 80-81 5.676522889045889E-4 82-83 6.713504357465991E-4 84-85 0.0 86-87 0.0017417980810311444 88-89 0.0013652240976773917 90-91 0.001130754971412349 92-93 0.011868131814489079 94-95 1.3013752747993324E-4 96-97 2.5242745282336E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 182.0 20-21 647.0 22-23 1399.0 24-25 3294.0 26-27 5058.0 28-29 8558.0 30-31 19101.0 32-33 25628.0 34-35 37981.0 36-37 53167.0 38-39 63461.0 40-41 66953.0 42-43 80354.0 44-45 97816.0 46-47 97664.0 48-49 84098.0 50-51 73518.0 52-53 70690.0 54-55 76092.0 56-57 80136.0 58-59 79491.0 60-61 78480.0 62-63 78084.0 64-65 84587.0 66-67 89814.0 68-69 88666.0 70-71 86323.0 72-73 83893.0 74-75 85787.0 76-77 87713.0 78-79 92697.0 80-81 95041.0 82-83 92638.0 84-85 94350.0 86-87 100012.0 88-89 108197.0 90-91 117997.0 92-93 122039.0 94-95 137236.0 96-97 207765.0 98-99 915338.0 100-101 6841451.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.77002771817777 #Duplication Level Percentage of deduplicated Percentage of total 1 89.08052085399687 74.6227770108903 2 7.438741145795241 12.462871039432338 3 1.8804829087949055 4.725843161799265 4 0.7093096714859048 2.3767556336458333 5 0.34641623903985924 1.4509648973197955 6 0.17795733186612783 0.8944494373847095 7 0.11309034055216542 0.6631506673899142 8 0.07077144600085429 0.47428207945176687 9 0.042643891089619385 0.32150519447295334 >10 0.1367279266922998 1.736578631602649 >50 0.0026778481546171893 0.14605580001276897 >100 6.225532385932213E-4 0.09793158840969453 >500 1.8922390457234663E-5 0.009304708246077806 >1k 1.8920902364621594E-5 0.017530149941842384 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 1.8668216875396E-5 0.0 5 0.0 0.0 0.0 1.8668216875396E-5 0.0 6 5.6004650626188E-5 0.0 0.0 1.8668216875396E-5 0.0 7 5.6004650626188E-5 0.0 0.0 1.8668216875396E-5 0.0 8 5.6004650626188E-5 1.8668216875396E-5 0.0 1.8668216875396E-5 9.334108437698E-6 9 5.6004650626188E-5 5.6004650626188E-5 0.0 3.7336433750792E-5 9.334108437698E-6 10-11 5.6004650626188E-5 5.6004650626188E-5 0.0 4.667054218849E-5 9.334108437698E-6 12-13 5.6004650626188E-5 5.6004650626188E-5 0.0 5.1337596407339E-5 2.3335271094245E-5 14-15 5.6004650626188E-5 9.334108437698E-5 0.0 7.933992172043299E-5 4.2003487969640997E-5 16-17 1.21343409690074E-4 9.334108437698E-5 0.0 1.30677518127772E-4 6.0671704845036994E-5 18-19 1.21343409690074E-4 1.02675192814678E-4 0.0 1.58679843440866E-4 1.02675192814678E-4 20-21 1.26010463908923E-4 1.30677518127772E-4 0.0 1.6801395187856399E-4 1.4001162656547E-4 22-23 1.30677518127772E-4 1.6801395187856399E-4 0.0 1.82015114535111E-4 1.5401278922201698E-4 24-25 1.35344572346621E-4 1.91349222972809E-4 0.0 2.28685656723601E-4 1.77348060316262E-4 26-27 1.4001162656547E-4 1.96016277191658E-4 0.0 3.03358524225185E-4 1.77348060316262E-4 28-29 1.4001162656547E-4 1.96016277191658E-4 0.0 5.08708909854541E-4 1.82015114535111E-4 30-31 1.4001162656547E-4 2.24018602504752E-4 0.0 0.001339444560809663 1.8668216875396E-4 32-33 1.4001162656547E-4 2.24018602504752E-4 0.0 0.0029262429952183226 1.96016277191658E-4 34-35 1.49345735003168E-4 2.70689144693242E-4 0.0 0.0051850972371412386 1.96016277191658E-4 36-37 1.49345735003168E-4 3.12692632662883E-4 0.0 0.008708723172372233 1.96016277191658E-4 38-39 1.49345735003168E-4 3.17359686881732E-4 0.0 0.01330110452371965 2.00683331410507E-4 40-41 1.49345735003168E-4 3.64030229070222E-4 0.0 0.018322854863201173 2.05350385629356E-4 42-43 1.58679843440866E-4 3.82698445945618E-4 0.0 0.02319992652189838 2.10017439848205E-4 44-45 1.58679843440866E-4 4.52704259228353E-4 0.0 0.028842395072486822 2.1468449406705399E-4 46-47 1.58679843440866E-4 5.04041855635692E-4 0.0 0.03539027214153197 2.1468449406705399E-4 48-49 1.58679843440866E-4 5.04041855635692E-4 0.0 0.042218172463708056 2.56687982036695E-4 50-51 1.91349222972809E-4 5.78714723137276E-4 0.0 0.04892472937619406 2.61355036255544E-4 52-53 2.05350385629356E-4 5.78714723137276E-4 0.0 0.05517858202945172 2.89357361568638E-4 54-55 2.05350385629356E-4 5.83381777356125E-4 0.0 0.062048485839597455 3.17359686881732E-4 56-57 2.05350385629356E-4 5.97382940012672E-4 0.0 0.06870370515567613 3.2669379531942997E-4 58-59 2.05350385629356E-4 6.0671704845037E-4 0.0 0.07454218998345623 3.45362012194826E-4 60-61 2.10017439848205E-4 6.16051156888068E-4 0.0 0.08040867713654942 3.45362012194826E-4 62-63 2.24018602504752E-4 6.25385265325766E-4 0.0 0.08583646119307081 3.50029066413675E-4 64-65 2.24018602504752E-4 7.09392241265048E-4 0.0 0.0914462603641273 3.59363174851373E-4 66-67 2.42686819380148E-4 7.14059295483897E-4 0.0 0.0973314157340959 3.92032554383316E-4 68-69 2.42686819380148E-4 7.37394566578142E-4 0.0 0.10331457924266031 4.06033717039863E-4 70-71 2.42686819380148E-4 7.4672867501584E-4 0.0 0.1089430466305922 4.10700771258712E-4 72-73 2.52020927817846E-4 7.56062783453538E-4 0.0 0.11295671325880234 4.667054218849E-4 74-75 2.52020927817846E-4 7.79398054547783E-4 0.0 0.11643366865184485 4.80706584541447E-4 76-77 2.52020927817846E-4 8.07400379860877E-4 0.0 0.11940658218925165 4.94707747197994E-4 78-79 2.52020927817846E-4 8.21401542517424E-4 0.0 0.12206213603977675 4.94707747197994E-4 80-81 2.52020927817846E-4 8.260685967362729E-4 0.0 0.12318689610651934 5.04041855635692E-4 82-83 2.52020927817846E-4 8.447368136116689E-4 0.0 0.12354625928137072 5.32044180948786E-4 84-85 2.52020927817846E-4 8.494038678305179E-4 0.0 0.12377027788387548 5.32044180948786E-4 86-87 2.52020927817846E-4 8.72739138924763E-4 0.0 0.12381694842606397 5.41378289386484E-4 88-89 2.61355036255544E-4 9.14742626894404E-4 0.0 0.12383561664293936 5.64713560480729E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15840 0.0 50.689167 1 GTATCAA 28525 0.0 37.63584 1 ATCAACG 35910 0.0 29.306986 3 TCAACGC 35910 0.0 29.283335 4 CAACGCA 36605 0.0 28.750952 5 TATCAAC 37335 0.0 28.39815 2 AACGCAG 37745 0.0 27.985022 6 GTGGTAT 7460 0.0 25.1078 1 TGGTATC 7270 0.0 24.582153 2 ACGCAGA 43410 0.0 24.26371 7 CGCAGAG 43755 0.0 24.052761 8 GCAGAGT 50255 0.0 20.856487 9 GTACATG 34040 0.0 20.129461 1 TACATGG 33360 0.0 20.101934 2 GAGTACT 29985 0.0 20.013403 12-13 ACATGGG 34060 0.0 19.37167 3 AGAGTAC 45860 0.0 19.216316 10-11 CAGAGTA 49270 0.0 18.605635 10-11 AGTACTT 32615 0.0 17.918835 12-13 GTACTTT 33420 0.0 17.892647 14-15 >>END_MODULE