##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140035_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10083119 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.78516558219734 34.0 31.0 34.0 31.0 34.0 2 32.939905697830206 34.0 31.0 34.0 31.0 34.0 3 33.60762746130438 34.0 33.0 34.0 31.0 37.0 4 36.32592871312934 37.0 37.0 37.0 35.0 37.0 5 36.282380779201354 37.0 37.0 37.0 35.0 37.0 6 36.31561236161152 37.0 37.0 37.0 35.0 37.0 7 36.32733611494618 37.0 37.0 37.0 35.0 37.0 8 36.59419947339707 37.0 37.0 37.0 35.0 39.0 9 37.931789855896774 39.0 38.0 39.0 35.0 39.0 10-11 37.91988565244544 39.0 38.0 39.0 35.0 39.0 12-13 38.06929056376306 39.0 38.0 39.0 35.0 40.0 14-15 39.315937756957936 41.0 39.0 41.0 36.0 41.0 16-17 39.29543308970171 41.0 39.0 41.0 36.0 41.0 18-19 39.31117102753622 41.0 39.0 41.0 36.0 41.0 20-21 39.24446390842006 41.0 39.0 41.0 36.0 41.0 22-23 39.22932807385551 40.0 39.0 41.0 36.0 41.0 24-25 39.13471632734421 40.0 39.0 41.0 36.0 41.0 26-27 38.99985254143234 40.0 39.0 41.0 35.0 41.0 28-29 38.88994856212783 40.0 39.0 41.0 35.0 41.0 30-31 38.77252686669688 40.0 38.0 41.0 35.0 41.0 32-33 38.68196651452342 40.0 38.0 41.0 35.0 41.0 34-35 38.556475622000384 40.0 38.0 41.0 34.5 41.0 36-37 38.7002899963131 40.0 38.0 41.0 35.0 41.0 38-39 38.75226548791627 40.0 38.0 41.0 35.0 41.0 40-41 38.72762069350019 40.0 38.0 41.0 35.0 41.0 42-43 38.68652519262667 40.0 38.0 41.0 35.0 41.0 44-45 38.61585296648374 40.0 38.0 41.0 35.0 41.0 46-47 38.54515127476746 40.0 38.0 41.0 34.0 41.0 48-49 38.45648609263198 40.0 38.0 41.0 34.0 41.0 50-51 38.3612511734697 40.0 38.0 41.0 34.0 41.0 52-53 38.24492483129656 40.0 37.5 41.0 34.0 41.0 54-55 38.106757012834095 40.0 37.0 41.0 33.5 41.0 56-57 37.956187119656455 40.0 37.0 41.0 33.0 41.0 58-59 37.76423811401307 39.5 36.5 41.0 33.0 41.0 60-61 37.541509975370275 39.0 36.0 41.0 33.0 41.0 62-63 37.333843780932426 39.0 35.5 40.0 33.0 41.0 64-65 37.08704079381148 38.5 35.0 40.0 32.0 41.0 66-67 36.79385293741148 38.0 35.0 40.0 32.0 41.0 68-69 36.44914790658491 37.0 35.0 40.0 31.5 41.0 70-71 36.156663743893034 37.0 35.0 39.0 31.0 41.0 72-73 35.81677955308403 36.0 34.5 39.0 31.0 40.0 74-75 35.38010220067494 36.0 34.0 38.5 31.0 40.0 76-77 34.55397105439462 35.0 33.5 37.0 29.5 39.0 78-79 34.771390525364296 35.0 34.0 37.0 30.5 39.0 80-81 34.58034878772463 35.0 34.0 37.0 31.0 39.0 82-83 34.30186194713559 35.0 34.0 36.0 30.0 38.0 84-85 34.03545040981659 35.0 34.0 36.0 30.0 37.0 86-87 33.81272564934946 35.0 34.0 35.5 30.0 37.0 88-89 33.62893599738727 35.0 33.0 35.0 30.0 36.5 90-91 33.44446997638205 35.0 33.0 35.0 30.0 36.0 92-93 33.31366989117728 34.5 33.0 35.0 29.5 36.0 94-95 33.23126738633333 34.0 33.0 35.0 29.0 35.5 96-97 33.21278122998122 34.0 33.0 35.0 29.5 35.0 98-99 33.19793000734262 34.0 33.0 35.0 29.5 35.0 100-101 32.017155817571044 33.0 30.5 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 1.0 18 1.0 19 7.0 20 38.0 21 219.0 22 1064.0 23 3560.0 24 9484.0 25 19828.0 26 35541.0 27 56994.0 28 83073.0 29 112552.0 30 146537.0 31 186049.0 32 237601.0 33 311101.0 34 438103.0 35 642000.0 36 1117704.0 37 2305669.0 38 3042736.0 39 1263881.0 40 69375.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.78702259929255 0.0024199430281937246 26.614602848669655 30.595954609009606 2 14.011149934986813 24.66409853836869 38.02739777655895 23.297353750085545 3 15.6399271812404 24.54403975913795 33.71972513258798 26.096307927033667 4 12.660719166575094 24.044868669566036 37.346104120987995 25.948308042870877 5 17.35918565657822 36.400232190105505 32.2613731448321 13.979209008484181 6 27.879437269193375 37.63085736591744 20.331135732247848 14.158569632641338 7 26.00984913888218 33.06174728742061 22.316724543952933 18.61167902974428 8 23.997442853974903 32.52780192154886 22.074148507267 21.400606717209243 9 23.292110912263635 20.987185990823264 23.990913513248152 31.729789583664953 10-11 24.420252653107553 26.43278171863837 28.646445670695662 20.50051995755841 12-13 24.68315968412739 24.345922646626434 28.648347824638126 22.322569844608047 14-15 22.073623423727028 26.991693279834923 26.74986643414422 24.184816862293825 16-17 21.287393739862924 29.23391243789818 27.724466574459004 21.754227247779887 18-19 21.326569219928565 28.276261849636747 29.512105138144314 20.885063792290378 20-21 22.045542544552337 27.54844215088982 29.43708401717468 20.96893128738316 22-23 21.8609744821559 27.286518035832124 29.271675120640094 21.58083236137188 24-25 21.593849998087684 27.548741312922882 29.42172764749212 21.435681041497315 26-27 21.616530827077522 27.77722505961909 29.188806007642604 21.41743810566078 28-29 21.580153072071646 27.661277056804177 29.26636194884938 21.492207922274794 30-31 21.77084493405572 27.517667910579828 29.304030436174532 21.40745671918992 32-33 21.59149395532356 27.8234200786194 29.125747987446704 21.45933797861034 34-35 21.796306364066975 27.651502937636618 29.054739649533268 21.497451048763143 36-37 21.671281358449768 27.722277161416166 29.133342235888847 21.47309924424522 38-39 21.527596053591232 27.950461299728996 29.11364776947249 21.408294877207286 40-41 21.882914935537336 27.639635512762844 28.889604299378423 21.5878452523214 42-43 21.68395936996125 27.7577547072505 28.87733833700591 21.68094758578234 44-45 21.82888657563644 27.99454192466529 28.534444228546967 21.642127271151303 46-47 21.919177339257303 27.866445184376648 28.276030610728675 21.93834686563737 48-49 21.783191549210255 28.030156518614742 28.325443799659478 21.86120813251553 50-51 21.856626162914576 28.259916037808413 28.059316349988094 21.824141449288913 52-53 22.07934968493963 27.978865629977072 27.969116247941578 21.97266843714172 54-55 21.94962164339245 27.968801235957443 28.107348870642713 21.974228250007393 56-57 21.93707832675927 28.226222556543696 27.961890077279328 21.874809039417705 58-59 22.010431975055198 28.02955256454527 28.016032846301837 21.943982614097695 60-61 22.020611088621454 28.07464308366535 28.074659472889763 21.83008635482343 62-63 21.984026448518648 28.27410985597182 27.918527323616217 21.82333637189332 64-65 22.041888282488088 28.030763106755067 27.87448507734861 22.05286353340824 66-67 21.94729415272994 28.094503724645342 27.898627946056337 22.059574176568383 68-69 22.008987531511195 28.185176446324256 27.879442021261635 21.92639400090291 70-71 22.036738307591783 27.8588735610763 27.918366788656563 22.18602134267535 72-73 21.977205863156744 27.968901361384873 27.947527114011972 22.10636566144641 74-75 21.888652499017823 28.15387504902171 27.883072712968616 22.07439973899185 76-77 22.099095629751645 27.922829633210966 27.75518687070279 22.222887866334602 78-79 21.900582474850474 28.012470300571408 27.92846212044784 22.158485104130285 80-81 21.99191820140995 28.06675254222462 27.832440012831743 22.108889243533685 82-83 22.070791810525154 27.900127053740114 27.92043826325151 22.10864287248322 84-85 22.091982603044112 27.92273410580191 27.956005338528843 22.029277952625133 86-87 21.978679334368202 28.01361188111555 27.901129640779278 22.106579143736965 88-89 22.053378390359306 27.881694588386786 27.897334764196096 22.16759225705781 90-91 22.05637303599273 27.85729290785512 27.98702961823945 22.099304437912696 92-93 22.002475169865573 27.93751905957147 27.972556911808233 22.087448858754723 94-95 22.015215643786163 27.835620640622405 27.97627793573968 22.172885779851754 96-97 21.878744270418686 27.951940918105077 28.135627878085888 22.033686933390342 98-99 22.281928821156708 28.87589931146578 28.044756722092295 20.797415145285214 100-101 22.6634442335684 30.961476306706707 24.998130618152235 21.37694884157266 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2015.0 1 1711.0 2 2182.5 3 3137.5 4 4283.0 5 6600.5 6 8567.5 7 10679.5 8 12676.0 9 13271.5 10 12343.5 11 11266.0 12 12463.0 13 16723.0 14 27681.5 15 43791.0 16 57289.0 17 64359.5 18 64554.5 19 60317.5 20 54437.0 21 48525.5 22 45526.5 23 47842.5 24 55514.5 25 68150.5 26 85635.5 27 105745.0 28 127793.5 29 151836.5 30 175452.0 31 198942.5 32 224266.0 33 248638.5 34 271594.0 35 292379.5 36 315096.5 37 336957.5 38 353872.0 39 368425.0 40 380508.0 41 391987.5 42 399226.5 43 405012.0 44 410812.0 45 415441.0 46 418759.0 47 418274.5 48 413228.0 49 403506.5 50 392676.0 51 376728.5 52 355536.5 53 333767.0 54 311157.5 55 287386.0 56 262905.0 57 236893.5 58 209207.5 59 180757.0 60 151537.5 61 124044.0 62 98533.5 63 76170.0 64 57003.0 65 42212.5 66 31818.5 67 24363.5 68 18641.5 69 13668.5 70 9806.5 71 7092.5 72 5087.0 73 3509.5 74 2395.5 75 1608.0 76 1054.0 77 644.5 78 390.0 79 246.0 80 156.5 81 114.5 82 91.5 83 68.5 84 52.0 85 38.5 86 27.0 87 18.0 88 10.5 89 7.0 90 5.5 91 4.5 92 3.5 93 2.0 94 0.5 95 0.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.002350463185052165 2 0.005444743833728433 3 2.9752698544964117E-5 4 2.9752698544964117E-5 5 1.983513236330941E-5 6 2.9752698544964117E-5 7 3.967026472661882E-5 8 2.9752698544964117E-5 9 1.3884592654316586E-4 10-11 8.380343423498224E-4 12-13 3.4711481635791464E-5 14-15 7.735701621690669E-4 16-17 8.033228607140311E-4 18-19 3.967026472661882E-5 20-21 5.256475854278985E-4 22-23 0.0016812112933955225 24-25 0.00831824607524615 26-27 0.056092579500005485 28-29 0.31666533289302257 30-31 0.3110958754749803 32-33 0.310905086775626 34-35 0.1545301044948749 36-37 0.044618178372804844 38-39 0.035177539065775 40-41 0.03193508271626942 42-43 0.026319428190807806 44-45 0.014139741514845856 46-47 0.008542661788767067 48-49 0.0058835568849816364 50-51 0.00243234564832041 52-53 0.0018554760186616356 54-55 0.0017350853531194993 56-57 7.638364946661083E-4 58-59 0.0034909360880071494 60-61 0.0027423883427299288 62-63 5.339792463736204E-4 64-65 0.001392694446500503 66-67 0.00768399516708604 68-69 0.007149123718465927 70-71 0.009396983756267884 72-73 0.009504512458472381 74-75 0.0074843346783282265 76-77 0.004028838991665925 78-79 4.435158077608525E-4 80-81 6.094382992417333E-4 82-83 5.97740107672918E-4 84-85 2.0744903099337335E-4 86-87 0.002029722791689365 88-89 0.001304891852249031 90-91 0.0024542471094124232 92-93 0.009950247479527254 94-95 8.470576215508139E-5 96-97 4.65332991291426E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 187.0 20-21 662.0 22-23 1289.0 24-25 2913.0 26-27 4704.0 28-29 8321.0 30-31 16758.0 32-33 23145.0 34-35 34922.0 36-37 47052.0 38-39 54406.0 40-41 58260.0 42-43 71185.0 44-45 85975.0 46-47 85087.0 48-49 74403.0 50-51 66277.0 52-53 65024.0 54-55 69472.0 56-57 71376.0 58-59 71350.0 60-61 70099.0 62-63 70419.0 64-65 75878.0 66-67 79715.0 68-69 80291.0 70-71 78770.0 72-73 77649.0 74-75 79104.0 76-77 81900.0 78-79 86219.0 80-81 87629.0 82-83 85910.0 84-85 89307.0 86-87 94268.0 88-89 101514.0 90-91 110077.0 92-93 115573.0 94-95 136782.0 96-97 253569.0 98-99 1025708.0 100-101 6289970.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.12510563046484 #Duplication Level Percentage of deduplicated Percentage of total 1 89.0621790629884 74.92365221353275 2 7.528269631927036 12.666329560009654 3 1.9124692517818946 4.82660033463504 4 0.7027598224201884 2.3647897717578026 5 0.31920223167514356 1.3426460728575784 6 0.16117574623378125 0.8135356006191508 7 0.08825710022120202 0.5197246515123001 8 0.05394201451849136 0.3630302135430523 9 0.04287917486245093 0.3246493603185771 >10 0.12585171851227225 1.6264721525027868 >50 0.002545597176910414 0.14216675588788405 >100 4.4894123531453143E-4 0.07484839855374315 >500 1.970644687962257E-5 0.01155491426968527 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.9752698544964114E-5 0.0 9.917566181654705E-6 0.0 3 0.0 2.9752698544964114E-5 0.0 9.917566181654705E-6 0.0 4 0.0 2.9752698544964114E-5 0.0 9.917566181654705E-6 0.0 5 0.0 3.967026472661882E-5 0.0 9.917566181654705E-6 0.0 6 2.9752698544964114E-5 3.967026472661882E-5 0.0 3.967026472661882E-5 0.0 7 2.9752698544964114E-5 3.967026472661882E-5 0.0 4.958783090827352E-5 0.0 8 4.958783090827352E-5 5.950539708992823E-5 0.0 6.942296327158293E-5 0.0 9 5.950539708992823E-5 1.4876349272482055E-4 0.0 8.925809563489234E-5 0.0 10-11 6.446418018075558E-5 1.537222758156479E-4 0.0 8.925809563489234E-5 9.917566181654705E-6 12-13 7.934052945323764E-5 1.5868105890647527E-4 0.0 8.925809563489234E-5 9.917566181654705E-6 14-15 8.925809563489234E-5 2.380215883597129E-4 0.0 1.041344449073744E-4 9.917566181654705E-6 16-17 1.4876349272482055E-4 2.67774286904677E-4 0.0 1.2396957727068382E-4 9.917566181654705E-6 18-19 1.537222758156479E-4 2.67774286904677E-4 0.0 1.4876349272482058E-4 9.917566181654705E-6 20-21 1.5868105890647527E-4 2.776918530863317E-4 0.0 1.5868105890647527E-4 9.917566181654705E-6 22-23 1.6363984199730262E-4 3.2727968399460524E-4 0.0 1.785161912697847E-4 9.917566181654705E-6 24-25 1.6859862508812997E-4 3.4215603326708725E-4 0.0 2.082688898147488E-4 9.917566181654705E-6 26-27 1.6859862508812997E-4 3.4711481635791463E-4 0.0 3.024857685404685E-4 9.917566181654705E-6 28-29 1.6859862508812997E-4 3.52073599448742E-4 0.0 6.446418018075557E-4 9.917566181654705E-6 30-31 1.6859862508812997E-4 3.8182629799370614E-4 0.0 0.0015818518059739252 9.917566181654705E-6 32-33 1.6859862508812997E-4 3.9670264726618815E-4 0.0 0.003327343453945153 9.917566181654705E-6 34-35 1.785161912697847E-4 4.6116682744694375E-4 0.0 0.0055290431462724976 9.917566181654705E-6 36-37 1.785161912697847E-4 5.157134414460446E-4 0.0 0.00938201760784535 9.917566181654705E-6 38-39 1.8843375745143938E-4 5.35548573809354E-4 0.0 0.014206913555220364 9.917566181654705E-6 40-41 1.9835132363309408E-4 5.603424892634907E-4 0.0 0.019413635800589087 9.917566181654705E-6 42-43 2.082688898147488E-4 6.297654525350737E-4 0.0 0.024640193178321113 9.917566181654705E-6 44-45 2.380215883597129E-4 6.942296327158293E-4 0.0 0.03088330108967275 9.917566181654705E-6 46-47 2.380215883597129E-4 6.942296327158293E-4 0.0 0.0376917102733787 9.917566181654705E-6 48-49 2.380215883597129E-4 7.091059819883113E-4 0.0 0.044926574802895816 9.917566181654705E-6 50-51 2.578567207230223E-4 7.983640776232036E-4 0.0 0.05123910567751903 9.917566181654705E-6 52-53 2.67774286904677E-4 8.132404268956857E-4 0.0 0.057640894647777136 9.917566181654705E-6 54-55 2.876094192679864E-4 8.231579930773404E-4 0.0 0.06441955113293812 9.917566181654705E-6 56-57 3.0744455163129585E-4 8.529106916223046E-4 0.0 0.06973040782321423 9.917566181654705E-6 58-59 3.0744455163129585E-4 8.677870408947865E-4 0.0 0.07481811927440309 9.917566181654705E-6 60-61 3.1736211781295055E-4 9.024985225305781E-4 0.0 0.08032236850522145 9.917566181654705E-6 62-63 3.4711481635791463E-4 9.024985225305781E-4 0.0 0.08517701715114143 9.917566181654705E-6 64-65 3.52073599448742E-4 0.0010016741843471252 0.0 0.08991761378597238 9.917566181654705E-6 66-67 3.6199116563039675E-4 0.0010115917505287798 0.0 0.09495573740625296 9.917566181654705E-6 68-69 3.6694994872122407E-4 0.0010115917505287798 0.0 0.10004344885744183 9.917566181654705E-6 70-71 3.6694994872122407E-4 0.001016550533619607 0.0 0.10437742527882493 9.917566181654705E-6 72-73 3.8678508108453346E-4 0.0010264680998012619 0.0 0.10798741936894725 9.917566181654705E-6 74-75 3.8678508108453346E-4 0.0010661383645278809 0.0 0.11124038107652999 9.917566181654705E-6 76-77 3.8678508108453346E-4 0.0011157261954361543 0.0 0.11415614553393648 9.917566181654705E-6 78-79 4.0662021344784285E-4 0.0011306025447086364 0.0 0.11675454787353001 9.917566181654705E-6 80-81 4.264553458111523E-4 0.0011306025447086364 0.0 0.11781572745496706 9.917566181654705E-6 82-83 4.3141412890197967E-4 0.0011306025447086364 0.0 0.11817771862059745 9.917566181654705E-6 84-85 4.36372911992807E-4 0.0011504376770719456 0.0 0.11839590507659387 9.917566181654705E-6 86-87 4.413316950836343E-4 0.0011603552432536005 0.0 0.11846532803986544 9.917566181654705E-6 88-89 4.462904781744617E-4 0.0012198606403435288 0.0 0.11848516317222875 9.917566181654705E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13355 0.0 50.25246 1 GTATCAA 23970 0.0 37.63631 1 ATCAACG 28285 0.0 31.070473 3 TCAACGC 29370 0.0 29.937304 4 CAACGCA 30145 0.0 29.15366 5 TATCAAC 30785 0.0 28.800667 2 AACGCAG 30610 0.0 28.724834 6 ACGCAGA 31050 0.0 28.317785 7 CGCAGAG 36035 0.0 24.376493 8 GTGGTAT 6430 0.0 22.614258 1 TGGTATC 6145 0.0 22.33225 2 GCAGAGT 42005 0.0 20.90203 9 GAGTACT 25745 0.0 19.975655 12-13 GTACATG 27605 0.0 19.46486 1 AGAGTAC 37875 0.0 19.342413 10-11 TACATGG 27205 0.0 18.896564 2 CAGAGTA 41045 0.0 18.613642 10-11 ACATGGG 26655 0.0 18.607428 3 AGTACTT 28110 0.0 17.79002 12-13 GTACTTT 28695 0.0 17.727602 14-15 >>END_MODULE