##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140034_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10172137 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 20.11764705882353 18.0 18.0 18.0 18.0 31.0 2 29.55257769335981 30.0 27.0 32.0 27.0 33.0 3 31.654796332373422 32.0 32.0 33.0 28.0 33.0 4 32.22547209106602 33.0 33.0 33.0 32.0 33.0 5 32.812471361720746 33.0 33.0 34.0 32.0 34.0 6 36.87755591573334 38.0 37.0 38.0 35.0 38.0 7 37.162695803251566 38.0 38.0 38.0 36.0 38.0 8 37.203727987540866 38.0 38.0 38.0 36.0 38.0 9 37.32810008359109 38.0 38.0 38.0 37.0 38.0 10-11 37.380325982632755 38.0 38.0 38.0 37.0 38.0 12-13 37.3942312711675 38.0 38.0 38.0 37.0 38.0 14-15 37.3993744382326 38.0 38.0 38.0 37.0 38.0 16-17 37.35934287947557 38.0 38.0 38.0 37.0 38.0 18-19 37.34796464105822 38.0 38.0 38.0 37.0 38.0 20-21 37.39841647208888 38.0 38.0 38.0 37.0 38.0 22-23 37.41665709720153 38.0 38.0 38.0 37.0 38.0 24-25 37.422433525303845 38.0 38.0 38.0 37.0 38.0 26-27 37.328263612675535 38.0 38.0 38.0 37.0 38.0 28-29 37.240081398395375 38.0 38.0 38.0 37.0 38.0 30-31 37.323155083235534 38.0 38.0 38.0 37.0 38.0 32-33 37.34461502572319 38.0 38.0 38.0 37.0 38.0 34-35 37.304001494663844 38.0 38.0 38.0 37.0 38.0 36-37 37.31114962944115 38.0 38.0 38.0 37.0 38.0 38-39 37.31304464825621 38.0 38.0 38.0 37.0 38.0 40-41 37.273347385490766 38.0 38.0 38.0 37.0 38.0 42-43 37.27441721259819 38.0 38.0 38.0 37.0 38.0 44-45 37.21435163328104 38.0 38.0 38.0 37.0 38.0 46-47 37.19544947015021 38.0 38.0 38.0 37.0 38.0 48-49 37.174631743202454 38.0 38.0 38.0 37.0 38.0 50-51 37.16728013744472 38.0 38.0 38.0 36.5 38.0 52-53 37.15005632846947 38.0 38.0 38.0 36.0 38.0 54-55 37.10468382779027 38.0 38.0 38.0 36.0 38.0 56-57 37.105857826179516 38.0 38.0 38.0 36.0 38.0 58-59 37.11721939211753 38.0 38.0 38.0 36.0 38.0 60-61 37.128261197172506 38.0 38.0 38.0 36.0 38.0 62-63 37.05888059802976 38.0 38.0 38.0 36.0 38.0 64-65 37.090839913946894 38.0 38.0 38.0 36.0 38.0 66-67 37.108175550769026 38.0 38.0 38.0 36.0 38.0 68-69 37.08009867761771 38.0 38.0 38.0 36.0 38.0 70-71 37.035074067026216 38.0 38.0 38.0 36.0 38.0 72-73 37.045102846287534 38.0 38.0 38.0 36.0 38.0 74-75 37.06231479914053 38.0 38.0 38.0 36.0 38.0 76-77 36.99894315235748 38.0 38.0 38.0 36.0 38.0 78-79 37.02337732069836 38.0 38.0 38.0 36.0 38.0 80-81 37.00035398491714 38.0 38.0 38.0 36.0 38.0 82-83 36.95344074977663 38.0 38.0 38.0 36.0 38.0 84-85 36.978003327483584 38.0 38.0 38.0 36.0 38.0 86-87 36.99996978915335 38.0 38.0 38.0 36.0 38.0 88-89 36.913247627370154 38.0 38.0 38.0 35.5 38.0 90-91 36.869614287209544 38.0 38.0 38.0 35.0 38.0 92-93 36.92258264721566 38.0 38.0 38.0 35.0 38.0 94-95 36.90587319063117 38.0 38.0 38.0 35.0 38.0 96-97 36.854338822833896 38.0 38.0 38.0 35.0 38.0 98-99 36.8752076182152 38.0 38.0 38.0 35.0 38.0 100 35.306123445091636 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 7.0 19 40.0 20 119.0 21 308.0 22 815.0 23 2038.0 24 4539.0 25 8784.0 26 15656.0 27 25045.0 28 37829.0 29 55431.0 30 77516.0 31 104298.0 32 139090.0 33 192194.0 34 292367.0 35 562419.0 36 1955512.0 37 6698127.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.81063536600028 13.890385078376353 22.880147996433788 24.418831559189577 2 15.251294885743235 21.19027543190794 39.8089663200432 23.749463362305626 3 18.61778896607468 25.87374707989088 29.89673654611612 25.611727407918316 4 12.607514334261491 17.31404979801678 38.13638084916712 31.942055018554615 5 13.39617844714343 37.48816099590577 35.59594553065184 13.51971502629896 6 30.873621021241316 37.30942377644129 18.380845431199088 13.436109771118307 7 27.06171933132189 31.98118112737265 23.356939338854236 17.600160202451224 8 25.371591043258658 35.82422257977847 21.09496755696468 17.709218819998195 9 26.341780493125487 15.602277082976762 20.66345547646478 37.39248694743297 10-11 24.888860619946428 25.991534522195288 28.783017767063107 20.33658709079518 12-13 25.58206304142384 23.65306326487738 28.83486036414964 21.93001332954914 14-15 22.664927733474293 24.799970743610707 26.07916605920663 26.455935463708364 16-17 22.550418854956437 27.855887115952132 26.734937801171966 22.858756227919464 18-19 22.6066902166182 27.202445267892085 28.27108502372707 21.919779491762643 20-21 23.2554328340572 26.48600426681379 28.025609140706255 22.23295375842276 22-23 23.16986656101395 26.376197072462887 27.894494425213512 22.559441941309654 24-25 22.812427906054854 26.543962577438695 27.955114988751806 22.688494527754642 26-27 22.808220834814787 26.662217724553912 27.892064744398542 22.637496696232763 28-29 22.78351141199356 26.597946673398027 27.927639144632195 22.690902769976226 30-31 22.901241789195073 26.5661367699492 27.834125670416178 22.69849577043955 32-33 22.68749780242833 26.771776108040328 27.869110063475745 22.671616026055595 34-35 22.879212782475662 26.695500488151712 27.896219446178787 22.529067283193832 36-37 22.888805455844103 26.64480581506418 27.793160123146375 22.67322860594533 38-39 22.786232427268196 26.709498994783388 27.91933528549822 22.584933292450195 40-41 22.875955443861393 26.529223565391412 27.91842394288019 22.676397047867006 42-43 22.74752051349337 26.697033008139424 27.72654548850999 22.828900989857214 44-45 22.841950499252732 26.7538033760263 27.6379480835585 22.766298041162468 46-47 22.959454573037046 26.75275508571262 27.4789485059258 22.808841835324532 48-49 22.849060919345618 26.855333388406557 27.407003319403728 22.8886023728441 50-51 22.806515029318458 26.953966199811685 27.338437815216444 22.901080955653416 52-53 22.960119302699244 26.818836715211997 27.288699979512305 22.932344002576453 54-55 22.94508204014499 26.794352818407674 27.24474431670934 23.015820824737993 56-57 22.913482288063015 26.846758774383346 27.355906805717055 22.883852131836584 58-59 22.916060985575836 26.859406299164117 27.298657837321024 22.925874877939027 60-61 22.98670280146116 26.85918141714181 27.344651832103413 22.80946394929362 62-63 23.00483041825779 26.838700901895407 27.276192681640925 22.880275998205875 64-65 22.97901797168108 26.856484365472248 27.238364783193543 22.92613287965313 66-67 22.954556593522973 26.813452768533587 27.22705824658632 23.004932391357123 68-69 22.90236656495817 26.845196903970525 27.28925228728239 22.963184243788916 70-71 22.97532115304634 26.692583458787556 27.260314094415772 23.07178129375033 72-73 23.00483708514845 26.752592183805685 27.187876555739578 23.05469417530629 74-75 22.871644158166255 26.913568446992723 27.22752092204056 22.987266472800467 76-77 23.103996577547345 26.790734603721493 27.121916114259403 22.983352704471756 78-79 22.945167640957763 26.771077495246832 27.105285065272138 23.178469798523267 80-81 22.999208744943473 26.909417047006478 27.038840678539817 23.05253352951023 82-83 23.036540966561216 26.785919299530388 27.17704015160118 23.000499582307217 84-85 23.063127375414886 26.856633583249938 27.066918255904632 23.013320785430547 86-87 22.946653681420074 26.865074909071712 27.180045570793222 23.008225838715 88-89 23.025375122344396 26.79396607261351 27.083035629975754 23.09762317506633 90-91 23.125911019551662 26.83196920013885 27.05531487730625 22.986804903003232 92-93 23.096518610436405 26.85248616637893 27.04599161581932 23.005003607365346 94-95 22.990737496681806 26.825222571675784 27.117884276011374 23.066155655631036 96-97 23.162623933713526 26.93012877791095 27.070156677666112 22.837090610709414 98-99 24.256974662293246 28.892190872951574 27.21683734844007 19.633997116315108 100 31.267422568582592 39.998262213838586 28.73431521757882 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1421.0 1 1843.0 2 3271.5 3 4454.0 4 5223.0 5 6521.5 6 7836.0 7 10311.0 8 12354.5 9 12639.5 10 12312.5 11 12027.5 12 12963.5 13 15106.5 14 19650.5 15 25065.5 16 27883.0 17 28161.0 18 26923.0 19 24892.0 20 23521.5 21 24094.5 22 27347.0 23 33737.0 24 43759.0 25 57187.0 26 73108.5 27 91017.5 28 110298.5 29 132206.5 30 152663.5 31 171647.0 32 192452.0 33 212697.0 34 230802.0 35 250554.0 36 270436.5 37 290788.5 38 313022.0 39 327729.0 40 340057.0 41 356156.5 42 369760.0 43 382925.5 44 401174.0 45 418834.0 46 430735.5 47 440339.0 48 444264.0 49 443312.5 50 443460.5 51 441792.5 52 435075.0 53 425735.0 54 411871.0 55 391153.5 56 366188.0 57 335975.0 58 300840.5 59 259844.0 60 217931.5 61 180221.0 62 146423.5 63 115288.5 64 87375.0 65 65566.5 66 49339.0 67 37625.5 68 28148.5 69 20344.0 70 14726.0 71 10470.0 72 7209.5 73 4751.0 74 3135.0 75 2095.5 76 1398.0 77 887.0 78 555.0 79 347.0 80 223.5 81 146.0 82 99.5 83 70.0 84 53.0 85 37.0 86 25.5 87 17.5 88 9.5 89 5.0 90 4.0 91 2.0 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 3.9323103886626775E-5 3 0.0 4 4.915387985828347E-5 5 0.00246752476888583 6 2.5560017526307405E-4 7 7.864620777325355E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.916320053812072E-6 28-29 0.0010427463025790068 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 1.5295162996473342E-5 44-45 1.0286552492791698E-5 46-47 2.5976664123551248E-5 48-49 7.347756068774157E-5 50-51 4.506148400932274E-4 52-53 2.3007804996546155E-4 54-55 3.347420213429353E-4 56-57 5.397184239916724E-4 58-59 4.295624669464073E-4 60-61 7.79022352544006E-5 62-63 4.159290951057848E-4 64-65 9.079951755946333E-5 66-67 1.375759541078718E-4 68-69 5.619969222267524E-4 70-71 9.372446740485619E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 9.53930752233052E-4 90-91 0.0 92-93 0.0 94-95 8.009710438955493E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 102.0 20-21 255.0 22-23 461.0 24-25 739.0 26-27 3008.0 28-29 10649.0 30-31 25126.0 32-33 30072.0 34-35 41703.0 36-37 70509.0 38-39 84686.0 40-41 78129.0 42-43 82236.0 44-45 95436.0 46-47 98162.0 48-49 96572.0 50-51 89017.0 52-53 82846.0 54-55 88111.0 56-57 92210.0 58-59 92878.0 60-61 92063.0 62-63 85285.0 64-65 86721.0 66-67 91668.0 68-69 93986.0 70-71 93749.0 72-73 85433.0 74-75 84109.0 76-77 87025.0 78-79 91407.0 80-81 91567.0 82-83 84347.0 84-85 80384.0 86-87 82400.0 88-89 87887.0 90-91 89535.0 92-93 87977.0 94-95 99384.0 96-97 309667.0 98-99 2351462.0 100-101 4753174.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.94485562723276 #Duplication Level Percentage of deduplicated Percentage of total 1 88.67656026355363 73.55264488580062 2 7.460540574005329 12.376269216239685 3 2.0452852709712555 5.089376745516491 4 0.8124589344075351 2.6955715606995345 5 0.3935206712777045 1.632025763273046 6 0.20499105832433592 1.0201772242551415 7 0.12591073145644388 0.7310553209801808 8 0.07329521484151826 0.48635688105573904 9 0.05103578595574895 0.38098403081297555 >10 0.15379139396994176 1.8582637440196295 >50 0.0022650239334263363 0.11961798603491573 >100 3.239651804646938E-4 0.04081065560743418 >500 2.111212264939731E-5 0.016845985704634203 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.9661551943313388E-5 0.0 2 0.0 4.915387985828347E-5 0.0 1.9661551943313388E-5 0.0 3 0.0 4.915387985828347E-5 0.0 1.9661551943313388E-5 0.0 4 0.0 1.0813853568822362E-4 0.0 2.9492327914970078E-5 0.0 5 0.0 1.0813853568822362E-4 0.0 2.9492327914970078E-5 0.0 6 2.457693992914173E-4 1.0813853568822362E-4 0.0 3.9323103886626775E-5 0.0 7 2.457693992914173E-4 1.0813853568822362E-4 0.0 3.9323103886626775E-5 0.0 8 2.457693992914173E-4 1.376308636031937E-4 0.0 4.915387985828347E-5 9.830775971656694E-6 9 2.457693992914173E-4 2.55600175263074E-4 0.0 8.847698374491024E-5 9.830775971656694E-6 10-11 2.605155632489024E-4 2.55600175263074E-4 0.0 1.3271547561736536E-4 9.830775971656694E-6 12-13 2.752617272063874E-4 2.55600175263074E-4 0.0 1.572924155465071E-4 1.9661551943313388E-5 14-15 2.850925031780441E-4 2.998386671355292E-4 0.0 1.572924155465071E-4 4.4238491872455125E-5 16-17 5.898465582994016E-4 3.244156070646709E-4 0.0 1.8678474346147718E-4 4.915387985828347E-5 18-19 5.898465582994016E-4 3.391617710221559E-4 0.0 2.457693992914173E-4 5.406926784411181E-5 20-21 5.947619462852299E-4 3.637387109512976E-4 0.0 2.9983866713552914E-4 6.39000438157685E-5 22-23 5.996773342710583E-4 3.981464268520961E-4 0.0 3.391617710221559E-4 8.356159575908189E-5 24-25 6.045927222568866E-4 5.013695745544913E-4 0.0 3.588233229654693E-4 1.0322314770239529E-4 26-27 6.09508110242715E-4 5.308619024694615E-4 0.0 4.0797720282375276E-4 1.0813853568822362E-4 28-29 6.09508110242715E-4 5.357772904552898E-4 0.0 5.996773342710583E-4 1.0813853568822362E-4 30-31 6.09508110242715E-4 6.488312141293417E-4 0.0 0.0014795317837343323 1.0813853568822362E-4 32-33 6.242542742002E-4 6.488312141293417E-4 0.0 0.003136017534958485 1.0813853568822362E-4 34-35 6.684927660726551E-4 7.520543618317369E-4 0.0 0.005077595789360682 1.0813853568822362E-4 36-37 6.684927660726551E-4 8.454467335624757E-4 0.0 0.008311921084035735 1.0813853568822362E-4 38-39 6.684927660726551E-4 8.65108285505789E-4 0.0 0.01313883208611917 1.0813853568822362E-4 40-41 6.783235420443119E-4 9.388391052932142E-4 0.0 0.01837372029102636 1.0813853568822362E-4 42-43 6.783235420443119E-4 9.585006572365275E-4 0.0 0.02318588512915231 1.0813853568822362E-4 44-45 6.979850939876252E-4 0.0010469776409814378 0.0 0.0284895887658611 1.0813853568822362E-4 46-47 7.176466459309386E-4 0.001120708460768863 0.0 0.034171777277478665 1.1305392367405196E-4 48-49 7.274774219025954E-4 0.0011256238487546912 0.0 0.040340589199693244 1.27800087631537E-4 50-51 8.35615957590819E-4 0.001346816308116967 0.0 0.04644058569010622 1.27800087631537E-4 52-53 8.749390614774457E-4 0.0013664778600602804 0.0 0.05273719769995233 1.3271547561736536E-4 54-55 8.749390614774457E-4 0.001391054799989422 0.0 0.05821785530415094 1.376308636031937E-4 56-57 8.847698374491023E-4 0.0014352932918618771 0.0 0.06398852079951342 1.376308636031937E-4 58-59 8.847698374491023E-4 0.0014352932918618771 0.0 0.0695871477153719 1.376308636031937E-4 60-61 9.63416045222356E-4 0.0014549548438051907 0.0 0.0753774747626777 1.376308636031937E-4 62-63 0.0010322314770239529 0.0014844471717201607 0.0 0.08055829369974077 1.474616395748504E-4 64-65 0.0010371468650097813 0.001631908811295011 0.0 0.08544910474563996 1.474616395748504E-4 66-67 0.001076469968896408 0.0016417395872666677 0.0 0.0908806084699803 1.474616395748504E-4 68-69 0.0010813853568822362 0.0017056396310824364 0.0 0.09637109685015056 1.474616395748504E-4 70-71 0.0011010469088255496 0.001730216571011578 0.0 0.10150767729534119 1.6712319151816377E-4 72-73 0.0012239316084712583 0.0017400473469832347 0.0 0.10551863389177712 1.7695396748982047E-4 74-75 0.0012288469964570866 0.0017646242869123765 0.0 0.10868905914263641 1.7695396748982047E-4 76-77 0.0012878316522870268 0.001858016658643115 0.0 0.11176609202176493 1.7695396748982047E-4 78-79 0.0013271547561736535 0.0019022551505155703 0.0 0.11393869351150107 1.7695396748982047E-4 80-81 0.0013271547561736535 0.0019120859264872268 0.0 0.11462684782951704 1.8678474346147718E-4 82-83 0.0013369855321453102 0.0019170013144730552 0.0 0.11516262511997233 2.0644629540479055E-4 84-85 0.0013517316961027953 0.001926832090444712 0.0 0.11539364835530627 2.0644629540479055E-4 86-87 0.0013615624720744522 0.0019661551943313386 0.0 0.11549195611502283 2.0644629540479055E-4 88 0.0013959701879752504 0.0021332783858495023 0.0 0.11550178689099448 2.0644629540479055E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10000 0.0 45.283398 1 GTATCAA 17725 0.0 33.100803 1 ATCAACG 21840 0.0 29.573555 3 TCAACGC 22075 0.0 29.315765 4 CAACGCA 22480 0.0 28.675596 5 TATCAAC 23750 0.0 27.601648 2 AACGCAG 23600 0.0 27.403366 6 ACGCAGA 27210 0.0 23.69048 7 TACATGG 30970 0.0 23.21313 2 CGCAGAG 28410 0.0 22.66017 8 ACATGGG 31040 0.0 22.579395 3 GTACATG 29290 0.0 22.194717 1 TCGCAGA 2975 0.0 20.31389 1 CATGGGG 22575 0.0 20.114862 4 GCAGAGT 34405 0.0 18.78487 9 GAGTACT 17670 0.0 18.525377 12-13 AGAGTAC 29730 0.0 17.729795 10-11 CAGAGTA 32950 0.0 17.43004 10-11 CGTCGAA 425 3.5519275E-5 16.883024 94 ATGGGGG 15300 0.0 16.04656 5 >>END_MODULE