##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140033_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8165863 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 20.24529091413853 18.0 18.0 18.0 18.0 32.0 2 29.74651007493023 32.0 27.0 32.0 27.0 33.0 3 31.739995393016024 33.0 32.0 33.0 29.0 33.0 4 32.26173314443311 33.0 33.0 33.0 32.0 33.0 5 32.85347378470591 33.0 33.0 34.0 32.0 34.0 6 36.90734463705796 38.0 37.0 38.0 35.0 38.0 7 37.178056256883075 38.0 38.0 38.0 36.0 38.0 8 37.21550435024442 38.0 38.0 38.0 36.0 38.0 9 37.33704141252431 38.0 38.0 38.0 37.0 38.0 10-11 37.39237224528503 38.0 38.0 38.0 37.0 38.0 12-13 37.407952349923086 38.0 38.0 38.0 37.0 38.0 14-15 37.40948599064177 38.0 38.0 38.0 37.0 38.0 16-17 37.367129108093046 38.0 38.0 38.0 37.0 38.0 18-19 37.354101152566486 38.0 38.0 38.0 37.0 38.0 20-21 37.40188846465419 38.0 38.0 38.0 37.0 38.0 22-23 37.419300876410304 38.0 38.0 38.0 37.0 38.0 24-25 37.424781999049785 38.0 38.0 38.0 37.0 38.0 26-27 37.330318005331335 38.0 38.0 38.0 37.0 38.0 28-29 37.23912397378043 38.0 38.0 38.0 37.0 38.0 30-31 37.322335061359325 38.0 38.0 38.0 37.0 38.0 32-33 37.345026920300015 38.0 38.0 38.0 37.0 38.0 34-35 37.301570392434655 38.0 38.0 38.0 37.0 38.0 36-37 37.30261630554628 38.0 38.0 38.0 37.0 38.0 38-39 37.30140437645566 38.0 38.0 38.0 37.0 38.0 40-41 37.262363429228174 38.0 38.0 38.0 37.0 38.0 42-43 37.26334320087561 38.0 38.0 38.0 37.0 38.0 44-45 37.19947973919415 38.0 38.0 38.0 37.0 38.0 46-47 37.1795005677791 38.0 38.0 38.0 37.0 38.0 48-49 37.156978358633076 38.0 38.0 38.0 36.5 38.0 50-51 37.14951936949382 38.0 38.0 38.0 36.0 38.0 52-53 37.12866985283692 38.0 38.0 38.0 36.0 38.0 54-55 37.080595904725 38.0 38.0 38.0 36.0 38.0 56-57 37.08118296388105 38.0 38.0 38.0 36.0 38.0 58-59 37.08854057558477 38.0 38.0 38.0 36.0 38.0 60-61 37.09613735989734 38.0 38.0 38.0 36.0 38.0 62-63 37.026192127901524 38.0 38.0 38.0 36.0 38.0 64-65 37.05386142250421 38.0 38.0 38.0 36.0 38.0 66-67 37.07156952582511 38.0 38.0 38.0 36.0 38.0 68-69 37.04196918945519 38.0 38.0 38.0 36.0 38.0 70-71 36.995580494030214 38.0 38.0 38.0 36.0 38.0 72-73 37.00645154470857 38.0 38.0 38.0 36.0 38.0 74-75 37.02435256443661 38.0 38.0 38.0 36.0 38.0 76-77 36.96144997935468 38.0 38.0 38.0 36.0 38.0 78-79 36.98519996689136 38.0 38.0 38.0 36.0 38.0 80-81 36.96032770561482 38.0 38.0 38.0 36.0 38.0 82-83 36.91100582452448 38.0 38.0 38.0 36.0 38.0 84-85 36.93648620000924 38.0 38.0 38.0 36.0 38.0 86-87 36.9540073783404 38.0 38.0 38.0 36.0 38.0 88-89 36.867726152865586 38.0 38.0 38.0 35.5 38.0 90-91 36.82630057443256 38.0 38.0 38.0 35.0 38.0 92-93 36.87515691878751 38.0 38.0 38.0 35.0 38.0 94-95 36.85689267808131 38.0 38.0 38.0 35.0 38.0 96-97 36.80807496396439 38.0 38.0 38.0 35.0 38.0 98-99 36.818384831876344 38.0 38.0 38.0 35.0 38.0 100 35.20478291782931 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 12.0 19 28.0 20 92.0 21 301.0 22 760.0 23 1805.0 24 3828.0 25 7390.0 26 12894.0 27 21077.0 28 31971.0 29 46860.0 30 64161.0 31 85775.0 32 115301.0 33 157220.0 34 238332.0 35 450301.0 36 1538960.0 37 5388794.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.70892764181814 14.950814139301627 22.07546220160686 24.264796017273373 2 14.499571692125318 21.727241054366015 40.95151089506243 22.82167635844624 3 18.239970472196266 26.147732333986013 30.64191745563206 24.970379738185663 4 11.906060575630876 18.0006314094612 39.71226293672998 30.381045078177944 5 12.694636723224242 37.87409249539015 36.56538031642509 12.865890464960522 6 29.489740973149953 38.68597361714353 19.054626760062323 12.769658649644194 7 26.036446126134155 32.66556949720305 24.005698847923078 17.29228552873971 8 24.164586155804965 36.9732629606938 21.823180232144477 17.038970651356752 9 25.65941897384269 16.156553202031432 21.439436346164513 36.744591477961364 10-11 23.816851935919082 26.872162807531797 29.71812654706551 19.592858709483615 12-13 24.56914229396207 24.488979303228575 29.719136850569257 21.2227415522401 14-15 21.644448357754715 25.861632750880098 27.14858796920791 25.345330922157277 16-17 21.428286269314096 28.918553985047264 27.855714699107736 21.797445046530907 18-19 21.410988648719677 28.287365340319816 29.386569429342618 20.91507658161789 20-21 22.1415799348763 27.563656278446004 29.21114085752204 21.08362292915566 22-23 21.84520309702558 27.46523341281113 29.092168732317887 21.597394757845407 24-25 21.612164226860624 27.506131409657776 29.232564904147925 21.649139459333675 26-27 21.64343255092022 27.706627908571924 29.079062054760424 21.570877485747435 28-29 21.55932972657165 27.783376922933652 29.084564478135437 21.57272887235926 30-31 21.789487062846298 27.64083971394824 29.064167075192866 21.5055061480126 32-33 21.561434806262348 27.754686337553036 29.088679389238358 21.595199466946262 34-35 21.68844297705511 27.781620829386313 29.084900416591182 21.4450357769674 36-37 21.699629973881056 27.67254593270152 29.05785037961205 21.56997371380538 38-39 21.500070928259404 27.82085181034245 29.164109527206072 21.514967734192076 40-41 21.72844691006574 27.69327492292139 29.043854332748225 21.53442383426465 42-43 21.609020335967593 27.747963555864285 28.948416120824533 21.694599987343587 44-45 21.715749577937686 27.87315732252077 28.82459112054749 21.586501978994054 46-47 21.714176920093752 27.862781509695267 28.661489774981924 21.761551795229053 48-49 21.682884972478995 27.925860700217385 28.696248147442887 21.695006179860734 50-51 21.648035364433827 28.034208922612798 28.586077392798202 21.731678320155176 52-53 21.78253955805947 27.95941975824212 28.51528346293194 21.742757220766475 54-55 21.799737028434713 27.903965995282647 28.51071160523684 21.785585371045805 56-57 21.763754494188696 27.986455964224305 28.49307175370012 21.756717787886878 58-59 21.731716348204152 27.980945223909888 28.540898518641605 21.74643990924435 60-61 21.76246947484932 27.969400888715047 28.57352298738416 21.694606649051472 62-63 21.761076762470267 27.965752969881873 28.530666600455408 21.74250366719245 64-65 21.707569402644765 27.98888160631693 28.569158160657043 21.734390830381262 66-67 21.792503865224504 28.01002557610251 28.414491488681392 21.782979069991594 68-69 21.76549246490334 28.030398520397494 28.440831179162867 21.7632778355363 70-71 21.786909952397803 27.810067042407017 28.504158784410922 21.898864220784258 72-73 21.796578215755055 27.840931683752313 28.501636289802452 21.86085381069018 74-75 21.702994483260447 28.00396492452536 28.449788760107214 21.843251832106976 76-77 21.833366556498802 27.927220335908338 28.35202170776874 21.88739139982413 78-79 21.78162471479198 27.942102771979222 28.34948753580271 21.926784977426088 80-81 21.79315854282918 27.96887963096026 28.29709040462449 21.940871421586074 82-83 21.83815376458639 27.943702242684765 28.374107867897397 21.844036124831444 84-85 21.92591642056512 27.925065696583008 28.328865450621336 21.820152432230532 86-87 21.78684486432162 27.972408197096353 28.367718316727846 21.87302862185418 88-89 21.85828193300092 27.956551822981712 28.273835384483675 21.911330859533688 90-91 21.895985768788886 27.96751878860173 28.295424150463884 21.841071292145504 92-93 21.90955538488483 27.997228634229128 28.27416003439094 21.819055946495112 94-95 21.79306813010738 28.047654290370318 28.30089546764653 21.858382111875773 96-97 21.901687361250623 28.166009673416674 28.339219542665166 21.593083422667533 98-99 22.945176900443855 30.054100680948626 28.59952299030412 18.401199428303396 100 28.918501987600564 41.1245980456752 29.956899966724237 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1238.0 1 1466.0 2 2301.0 3 3152.0 4 3875.0 5 4847.5 6 5866.5 7 7744.5 8 9327.5 9 9657.0 10 9509.5 11 9543.5 12 10485.5 13 12456.5 14 16521.0 15 21071.0 16 23917.0 17 24908.5 18 24435.5 19 23641.5 20 23460.0 21 24949.0 22 29145.0 23 36730.0 24 47716.5 25 61759.5 26 79540.5 27 100049.5 28 120318.0 29 141743.0 30 162312.5 31 180743.0 32 199570.0 33 217684.0 34 234853.5 35 252645.0 36 271221.0 37 287707.0 38 300679.5 39 311924.5 40 323533.5 41 332494.0 42 337698.0 43 342578.0 44 348053.5 45 351246.0 46 351298.5 47 350189.5 48 345949.0 49 336588.0 50 325276.0 51 312574.0 52 296554.0 53 278732.5 54 258579.5 55 236513.0 56 214944.5 57 193197.5 58 170400.0 59 146170.5 60 122173.5 61 99505.0 62 78905.5 63 61383.0 64 46699.0 65 35084.5 66 25764.0 67 19173.5 68 14341.5 69 10412.5 70 7483.5 71 5254.0 72 3701.5 73 2547.0 74 1685.0 75 1070.5 76 690.5 77 443.0 78 285.5 79 182.0 80 113.5 81 76.0 82 55.0 83 37.0 84 24.0 85 15.5 86 11.5 87 9.0 88 7.0 89 5.5 90 6.0 91 6.0 92 4.0 93 2.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 9.796882460555607E-5 3 0.0 4 6.123051537847255E-5 5 0.0024737128212902913 6 3.673830922708353E-4 7 2.449220615138902E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0010966716016888743 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 1.0426834187660337E-4 50-51 4.540427771467241E-4 52-53 1.7928913054997804E-4 54-55 2.94825326380012E-4 56-57 4.127281854039963E-4 58-59 3.554421786144795E-4 60-61 4.143449537756769E-5 62-63 4.0451940235466564E-4 64-65 9.154062520134536E-5 66-67 1.067003555255846E-4 68-69 4.889417553167203E-4 70-71 9.452517459890423E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.001114191391629056 90-91 0.0 92-93 8.207076354616936E-6 94-95 7.474890596670684E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 133.0 20-21 278.0 22-23 428.0 24-25 617.0 26-27 2093.0 28-29 6959.0 30-31 17468.0 32-33 22519.0 34-35 31607.0 36-37 52715.0 38-39 63122.0 40-41 59629.0 42-43 63951.0 44-45 74672.0 46-47 78053.0 48-49 75326.0 50-51 70175.0 52-53 66765.0 54-55 70952.0 56-57 75022.0 58-59 74437.0 60-61 72758.0 62-63 68312.0 64-65 70389.0 66-67 74528.0 68-69 77301.0 70-71 75469.0 72-73 69228.0 74-75 68729.0 76-77 71891.0 78-79 74768.0 80-81 74950.0 82-83 69411.0 84-85 66762.0 86-87 69013.0 88-89 71791.0 90-91 73394.0 92-93 71324.0 94-95 80099.0 96-97 239060.0 98-99 1807007.0 100-101 3912758.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.14491510448623 #Duplication Level Percentage of deduplicated Percentage of total 1 91.32776736948844 80.50078301465827 2 6.345145923738047 11.18584697546934 3 1.396632720835996 3.693182178307095 4 0.4680041654590609 1.650087497317394 5 0.1964200554692287 0.8656714557076821 6 0.10121872829040096 0.535314972728487 7 0.04927449632322858 0.30403074066591107 8 0.032688505861745945 0.23050604592608775 9 0.020701513349844075 0.1642259823080755 >10 0.06119956327772631 0.7769227632830413 >50 7.149696125065577E-4 0.042643721863921846 >100 1.9291601968290717E-4 0.025763840508894978 >500 3.907227415090006E-5 0.025020811255794483 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.2246103075694511E-5 0.0 1.2246103075694511E-5 0.0 3 0.0 1.2246103075694511E-5 0.0 1.2246103075694511E-5 0.0 4 0.0 3.673830922708353E-5 0.0 1.2246103075694511E-5 0.0 5 0.0 3.673830922708353E-5 0.0 1.2246103075694511E-5 0.0 6 3.673830922708353E-5 3.673830922708353E-5 0.0 1.2246103075694511E-5 0.0 7 3.673830922708353E-5 3.673830922708353E-5 0.0 2.4492206151389022E-5 0.0 8 3.673830922708353E-5 4.8984412302778044E-5 0.0 3.673830922708353E-5 0.0 9 3.673830922708353E-5 7.347661845416706E-5 0.0 8.572272152986158E-5 0.0 10-11 3.673830922708353E-5 7.347661845416706E-5 0.0 8.572272152986158E-5 0.0 12-13 3.673830922708353E-5 7.347661845416706E-5 0.0 8.572272152986158E-5 0.0 14-15 4.286136076493078E-5 1.0409187614340334E-4 0.0 8.572272152986158E-5 0.0 16-17 6.73535669163198E-5 1.102149276812506E-4 0.0 9.796882460555609E-5 0.0 18-19 7.347661845416706E-5 1.1633797921909784E-4 0.0 9.796882460555609E-5 0.0 20-21 7.347661845416706E-5 1.2858408229479235E-4 0.0 1.0409187614340334E-4 0.0 22-23 8.572272152986158E-5 1.5307628844618136E-4 0.0 1.224610307569451E-4 0.0 24-25 9.796882460555609E-5 1.775684945975704E-4 0.0 1.469532369083341E-4 0.0 26-27 1.102149276812506E-4 1.8369154613541766E-4 0.0 1.8369154613541766E-4 0.0 28-29 1.102149276812506E-4 1.8369154613541766E-4 0.0 3.673830922708353E-4 0.0 30-31 1.224610307569451E-4 2.571681645895847E-4 0.0 0.001126641482963895 0.0 32-33 1.224610307569451E-4 2.571681645895847E-4 0.0 0.002994172202007308 0.0 34-35 1.347071338326396E-4 3.1839867996805724E-4 0.0 0.005180101601018778 0.0 36-37 1.469532369083341E-4 3.9187529842222435E-4 0.0 0.008511041637607686 0.0 38-39 1.469532369083341E-4 4.102444530357661E-4 0.0 0.014346309753176118 0.0 40-41 1.5919933998402862E-4 4.286136076493079E-4 0.0 0.02023668533258518 0.0 42-43 1.8369154613541766E-4 4.408597107250024E-4 0.0 0.025759677819723402 0.0 44-45 1.8369154613541766E-4 4.7759801995208586E-4 0.0 0.03194395987294913 0.0 46-47 1.8369154613541766E-4 5.143363291791694E-4 0.0 0.038979346089935626 0.0 48-49 1.8369154613541766E-4 5.143363291791694E-4 0.0 0.04591676348231657 0.0 50-51 2.0206070074895943E-4 6.00059050709031E-4 0.0 0.05289091918392459 0.0 52-53 2.204298553625012E-4 6.00059050709031E-4 0.0 0.05958341451479164 0.0 54-55 2.204298553625012E-4 6.00059050709031E-4 0.0 0.06605547999029619 0.0 56-57 2.204298553625012E-4 6.00059050709031E-4 0.0 0.07236222307427886 0.0 58-59 2.204298553625012E-4 6.00059050709031E-4 0.0 0.07886490380747264 0.0 60-61 2.326759584381957E-4 6.061821022468782E-4 0.0 0.08531860012836365 0.0 62-63 2.449220615138902E-4 6.123051537847255E-4 0.0 0.09151512828466507 0.0 64-65 2.449220615138902E-4 6.857817722388926E-4 0.0 0.09717282790563594 0.0 66-67 2.571681645895847E-4 6.857817722388926E-4 0.0 0.10311831094888563 0.0 68-69 2.571681645895847E-4 7.041509268524344E-4 0.0 0.10927197774442211 0.0 70-71 2.571681645895847E-4 7.225200814659762E-4 0.0 0.11466638614926555 0.0 72-73 3.1227562843021E-4 7.225200814659762E-4 0.0 0.11883618424653952 0.0 74-75 3.1839867996805724E-4 7.286431330038234E-4 0.0 0.12198955578853085 0.0 76-77 3.1839867996805724E-4 7.408892360795179E-4 0.0 0.12506945071206804 0.0 78-79 3.1839867996805724E-4 7.470122876173652E-4 0.0 0.12720027264723888 0.0 80-81 3.245217315059045E-4 7.470122876173652E-4 0.0 0.12787380831640208 0.0 82-83 3.3064478304375175E-4 7.470122876173652E-4 0.0 0.12840039074865695 0.0 84-85 3.3064478304375175E-4 7.531353391552124E-4 0.0 0.12874940468631424 0.0 86-87 3.36767834581599E-4 7.837505968444487E-4 0.0 0.12888411182014686 0.0 88 3.428908861194463E-4 8.082428029958377E-4 0.0 0.12890248097476042 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7875 0.0 43.82572 1 GTATCAA 13855 0.0 31.957659 1 ATCAACG 16190 0.0 29.844257 3 TCAACGC 16380 0.0 29.549469 4 CAACGCA 16775 0.0 28.85367 5 AACGCAG 17425 0.0 27.825317 6 TATCAAC 18240 0.0 26.790028 2 ACGCAGA 19870 0.0 24.401419 7 CGCAGAG 20820 0.0 23.267784 8 TACATGG 21280 0.0 21.855282 2 ACATGGG 21580 0.0 20.966347 3 TTCAACG 970 0.0 20.393505 1 GTACATG 21530 0.0 20.369926 1 GCAGAGT 25970 0.0 18.767096 9 CATGGGG 15195 0.0 18.419876 4 GAGTACT 15040 0.0 18.077782 12-13 CAGAGTA 25120 0.0 17.17373 10-11 AGAGTAC 23200 0.0 17.16183 10-11 ATGGGGG 9550 0.0 15.909979 5 GTACTTT 17395 0.0 15.558234 14-15 >>END_MODULE