##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140032_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15627441 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 20.124221105681986 18.0 18.0 18.0 18.0 32.0 2 29.214109143013243 28.0 27.0 32.0 27.0 33.0 3 31.502505112641284 32.0 32.0 33.0 27.0 33.0 4 32.11830177442359 33.0 32.0 33.0 31.0 33.0 5 32.745088719259925 33.0 33.0 34.0 32.0 34.0 6 36.786696043197345 38.0 37.0 38.0 35.0 38.0 7 37.111518450141645 38.0 38.0 38.0 36.0 38.0 8 37.12593079058817 38.0 38.0 38.0 36.0 38.0 9 37.281929075912046 38.0 38.0 38.0 37.0 38.0 10-11 37.35075154019138 38.0 38.0 38.0 37.0 38.0 12-13 37.36772514450702 38.0 38.0 38.0 37.0 38.0 14-15 37.37073772986889 38.0 38.0 38.0 37.0 38.0 16-17 37.3239197639588 38.0 38.0 38.0 37.0 38.0 18-19 37.31680481148513 38.0 38.0 38.0 37.0 38.0 20-21 37.36542062813655 38.0 38.0 38.0 37.0 38.0 22-23 37.381983183210465 38.0 38.0 38.0 37.0 38.0 24-25 37.39097725617634 38.0 38.0 38.0 37.0 38.0 26-27 37.29679129310367 38.0 38.0 38.0 37.0 38.0 28-29 37.20733264390321 38.0 38.0 38.0 36.5 38.0 30-31 37.2888012807705 38.0 38.0 38.0 37.0 38.0 32-33 37.3129773013119 38.0 38.0 38.0 37.0 38.0 34-35 37.2704149357107 38.0 38.0 38.0 37.0 38.0 36-37 37.27568836573949 38.0 38.0 38.0 37.0 38.0 38-39 37.274544548997326 38.0 38.0 38.0 37.0 38.0 40-41 37.23328280579438 38.0 38.0 38.0 37.0 38.0 42-43 37.22667609941462 38.0 38.0 38.0 37.0 38.0 44-45 37.16279758076227 38.0 38.0 38.0 36.5 38.0 46-47 37.14093188851122 38.0 38.0 38.0 36.0 38.0 48-49 37.11552614909756 38.0 38.0 38.0 36.0 38.0 50-51 37.101039034488174 38.0 38.0 38.0 36.0 38.0 52-53 37.07309182006365 38.0 38.0 38.0 36.0 38.0 54-55 37.01991000000031 38.0 38.0 38.0 36.0 38.0 56-57 37.0124592574006 38.0 38.0 38.0 36.0 38.0 58-59 37.015953769788936 38.0 38.0 38.0 36.0 38.0 60-61 37.01981543929031 38.0 38.0 38.0 36.0 38.0 62-63 36.9443329838232 38.0 38.0 38.0 36.0 38.0 64-65 36.97030518099738 38.0 38.0 38.0 36.0 38.0 66-67 36.98039071213222 38.0 38.0 38.0 36.0 38.0 68-69 36.945665707879556 38.0 38.0 38.0 36.0 38.0 70-71 36.89572836659757 38.0 38.0 38.0 35.0 38.0 72-73 36.8978259661023 38.0 38.0 38.0 35.0 38.0 74-75 36.91440522782676 38.0 38.0 38.0 35.0 38.0 76-77 36.843125872307155 38.0 38.0 38.0 35.0 38.0 78-79 36.86170031779871 38.0 38.0 38.0 35.0 38.0 80-81 36.83449366332911 38.0 38.0 38.0 35.0 38.0 82-83 36.78118815420477 38.0 38.0 38.0 35.0 38.0 84-85 36.80135068048851 38.0 38.0 38.0 35.0 38.0 86-87 36.814985297968505 38.0 38.0 38.0 35.0 38.0 88-89 36.72161022468414 38.0 38.0 38.0 34.5 38.0 90-91 36.673863775688815 38.0 38.0 38.0 34.0 38.0 92-93 36.71778478736524 38.0 38.0 38.0 34.5 38.0 94-95 36.698613080227105 38.0 38.0 38.0 34.0 38.0 96-97 36.64354477121557 38.0 38.0 38.0 34.0 38.0 98-99 36.655563949865524 38.0 38.0 38.0 34.0 38.0 100 34.890791776659405 38.0 34.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 24.0 19 81.0 20 253.0 21 642.0 22 1671.0 23 3997.0 24 8418.0 25 15744.0 26 27177.0 27 42901.0 28 66052.0 29 94691.0 30 131311.0 31 177109.0 32 236922.0 33 328204.0 34 502593.0 35 943624.0 36 3173096.0 37 9872929.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.808933785128346 12.034964649682568 28.524708555930555 23.631393009258524 2 14.445371233346997 21.94319157302526 40.95069984293648 22.660737350691267 3 18.09328859408268 26.312337381404927 30.824989196887703 24.769384827624688 4 11.89268516054903 18.221937594633232 39.84845756546914 30.03691967934859 5 12.665378992030274 37.90235779607984 36.676208615577416 12.756054596312467 6 29.320370978987686 38.97798662452532 19.137364302512612 12.564278093974382 7 25.87908380358005 32.71215013852241 24.195211818190256 17.213554239707285 8 24.07655866369932 37.00960381165413 21.949351784466824 16.96448574017973 9 25.61645249532537 16.115172023365822 21.372513900388427 36.89586158092038 10-11 23.64539082246415 26.81065953152535 30.0565780411521 19.487371604858403 12-13 24.515821240342547 24.483714256224033 29.868626603677466 21.131837899755947 14-15 21.639700959357324 25.86359148628365 27.171383977709468 25.32532357664956 16-17 21.432187777896587 28.95560443965202 27.839570790892765 21.77263699155863 18-19 21.49033229432765 28.325520473889487 29.28964505449101 20.894502177291855 20-21 22.189803259975847 27.618972109539214 29.070357648226924 21.120866982258015 22-23 21.891411890012353 27.53762359992188 28.96112968197618 21.609834828089593 24-25 21.676809676108142 27.61231890631553 29.06333706786535 21.647534349710973 26-27 21.71611005802935 27.750150671246683 28.901306837253642 21.63243243347032 28-29 21.64416206133212 27.793436242508037 28.948510366260805 21.613891329899044 30-31 21.87226856663032 27.681046608491407 28.906116814323152 21.540568010555123 32-33 21.66138014929329 27.83167267663378 28.88528178035218 21.621665393720757 34-35 21.748053841251288 27.845123379458236 28.901768203097124 21.50505457619335 36-37 21.753586426718886 27.75245906832029 28.911596484978908 21.582358019981914 38-39 21.58663087551663 27.86261242688632 29.011042664936692 21.53971403266036 40-41 21.823393880130595 27.716554697522884 28.906492044948262 21.55355937739826 42-43 21.70282660504463 27.79979087949037 28.778115785451565 21.71926673001343 44-45 21.787204317729906 27.88228530389809 28.66559282922844 21.664917549143563 46-47 21.828561950587904 27.851627199963776 28.51997493944808 21.799835910000244 48-49 21.769837127463852 27.901011802212512 28.568677370823025 21.76047369950061 50-51 21.722427120567154 28.03850417087583 28.48887806004662 21.7501906485104 52-53 21.906141480127463 27.941567371111635 28.387819081981508 21.764472066779394 54-55 21.874679942697554 27.875582134446457 28.409939739851826 21.839798183004167 56-57 21.86464233428 27.949914460596194 28.41845614722323 21.76698705790058 58-59 21.842398731345387 27.937618530184643 28.423815912245438 21.79616682622453 60-61 21.85713793120363 27.933411751262906 28.4480636792446 21.76138663828886 62-63 21.886097953260457 27.920008571358235 28.41128476706198 21.78260870831933 64-65 21.865392739152842 27.90567168142852 28.429494462434906 21.79944111698373 66-67 21.8930017865191 27.939563567129923 28.307917561244366 21.859517085106614 68-69 21.8859192528138 27.937068628886518 28.346184233249065 21.83082788505061 70-71 21.91046091269979 27.711140773641223 28.408015498969142 21.97038281468985 72-73 21.92293720045599 27.754137222783303 28.376449626615624 21.946475950145082 74-75 21.77836773546353 27.912522084207904 28.31986625973681 21.989243920591758 76-77 21.925760545253073 27.852863005408224 28.235287628607843 21.986088820730863 78-79 21.912389495698577 27.905480600510852 28.195994751558516 21.98613515223205 80-81 21.914667381802186 27.874765011237514 28.199663256589435 22.01090435037087 82-83 21.97798887097375 27.85378086305861 28.23734530331209 21.930884962655554 84-85 22.02938061020639 27.841025494530232 28.196497865003874 21.933096030259513 86-87 21.88391173398863 27.86599341469409 28.239654123799106 22.010440727518173 88-89 21.96498213455593 27.85574126278924 28.155368629515355 22.023907973139472 90-91 22.021761942879685 27.90994921773995 28.164458264474558 21.903830574905808 92-93 22.03649197565834 27.874723381469042 28.119103410173167 21.969681232699454 94-95 21.941353351326665 27.928320570489973 28.156094913372737 21.974231164810625 96-97 22.03072047149836 28.063227880981312 28.20867161782743 21.697380029692894 98-99 23.073470311458493 29.98297395022465 28.439905896838937 18.503649841477916 100 29.1502011677674 40.98448447485216 29.865314357380445 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2078.0 1 2802.5 2 4661.5 3 6082.5 4 7209.5 5 8679.0 6 9923.5 7 13220.0 8 16462.5 9 17115.5 10 17073.0 11 17324.0 12 18623.5 13 22018.5 14 29627.5 15 38230.0 16 42633.0 17 43051.0 18 41873.0 19 40960.5 20 41886.0 21 46025.5 22 54695.5 23 69849.5 24 91767.5 25 120747.0 26 157861.0 27 198475.0 28 237736.5 29 277941.5 30 314546.5 31 347132.0 32 382730.0 33 419731.0 34 455351.5 35 489083.0 36 523576.0 37 555030.0 38 579865.5 39 599730.5 40 620305.0 41 639640.5 42 651157.0 43 660791.0 44 671268.5 45 676141.0 46 674124.0 47 670480.5 48 660228.0 49 643100.5 50 623800.5 51 598485.5 52 566792.5 53 531932.5 54 493824.0 55 451895.0 56 408627.5 57 365240.0 58 320458.5 59 273121.0 60 227029.0 61 184365.0 62 146218.5 63 113485.5 64 85111.0 65 63270.0 66 47274.0 67 36127.5 68 27456.0 69 20042.0 70 14503.0 71 10126.5 72 7006.5 73 4770.0 74 3205.0 75 2152.5 76 1365.0 77 801.5 78 502.0 79 329.5 80 205.0 81 124.5 82 76.5 83 49.0 84 34.5 85 22.0 86 13.0 87 9.0 88 7.5 89 6.0 90 4.0 91 2.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 3.839400193544164E-5 3 0.0 4 1.919700096772082E-5 5 0.00195169509838495 6 2.11167010644929E-4 7 3.839400193544164E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 9.956746420845802E-4 30-31 0.0 32-33 0.0 34-35 6.447142537779046E-6 36-37 0.0 38-39 0.0 40-41 0.0 42-43 9.9376123322854E-6 44-45 6.681971499654241E-6 46-47 1.3495906371069878E-5 48-49 1.1925749195156743E-4 50-51 4.953448420515574E-4 52-53 2.1864658320290312E-4 54-55 3.186338102686223E-4 56-57 4.984912508244992E-4 58-59 4.213595286600895E-4 60-61 5.049600421511788E-5 62-63 4.042390031422481E-4 64-65 1.2131554577842121E-4 66-67 1.5966288110926344E-4 68-69 6.229214686656993E-4 70-71 1.4794572804434185E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 8.977424574810382E-4 90-91 0.0 92-93 1.2822737072212655E-5 94-95 9.51600063601488E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 204.0 20-21 467.0 22-23 806.0 24-25 1158.0 26-27 4460.0 28-29 14486.0 30-31 35801.0 32-33 45697.0 34-35 62854.0 36-37 102799.0 38-39 121325.0 40-41 113994.0 42-43 123124.0 44-45 143661.0 46-47 147045.0 48-49 140983.0 50-51 131147.0 52-53 124862.0 54-55 134789.0 56-57 140672.0 58-59 139754.0 60-61 135632.0 62-63 128637.0 64-65 132322.0 66-67 140898.0 68-69 143595.0 70-71 140899.0 72-73 130708.0 74-75 129405.0 76-77 136001.0 78-79 140681.0 80-81 141104.0 82-83 131185.0 84-85 126981.0 86-87 130945.0 88-89 136889.0 90-91 139282.0 92-93 136777.0 94-95 156023.0 96-97 463796.0 98-99 3493281.0 100-101 7482312.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.03606199393512 #Duplication Level Percentage of deduplicated Percentage of total 1 90.23896345699242 77.63805054254246 2 6.833949115991422 11.759321396136722 3 1.6637026461878863 4.294152720206848 4 0.6042066475862984 2.0793424235552993 5 0.26910426333780707 1.1576335541681908 6 0.13711650617234258 0.7078178535261272 7 0.0765232433789425 0.4608630957929377 8 0.04915442909449295 0.3383242807080227 9 0.03252914988935661 0.2518811960841623 >10 0.09327586463674091 1.183521278138325 >50 0.001095815046712921 0.06107453944646048 >100 3.444122481237884E-4 0.04216480742825345 >500 2.2982882628425623E-5 0.013244366478133134 >1k 1.1466554910269654E-5 0.012607945788112973 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 6.399000322573607E-6 0.0 1.919700096772082E-5 0.0 3 0.0 6.399000322573607E-6 0.0 2.5596001290294427E-5 0.0 4 0.0 1.2798000645147213E-5 0.0 3.199500161286803E-5 0.0 5 1.2798000645147213E-5 1.2798000645147213E-5 0.0 3.839400193544164E-5 0.0 6 1.919700096772082E-5 1.2798000645147213E-5 0.0 3.839400193544164E-5 6.399000322573607E-6 7 1.919700096772082E-5 1.919700096772082E-5 0.0 5.7591002903162456E-5 6.399000322573607E-6 8 1.919700096772082E-5 1.919700096772082E-5 0.0 5.7591002903162456E-5 6.399000322573607E-6 9 1.919700096772082E-5 7.678800387088328E-5 0.0 1.2158100612889852E-4 1.2798000645147213E-5 10-11 1.919700096772082E-5 8.318700419345688E-5 0.0 1.3437900677404574E-4 1.2798000645147213E-5 12-13 2.5596001290294427E-5 9.278550467731728E-5 0.0 1.3757850693533254E-4 1.2798000645147213E-5 14-15 2.5596001290294427E-5 1.4077800709661934E-4 0.0 1.5997500806434016E-4 2.5596001290294427E-5 16-17 2.8795501451581228E-5 1.5357600774176656E-4 0.0 1.6317450822562695E-4 3.839400193544164E-5 18-19 3.199500161286803E-5 1.6317450822562698E-4 0.0 1.7917200903206097E-4 3.839400193544164E-5 20-21 3.839400193544164E-5 1.8237150919334777E-4 0.0 2.207655111287894E-4 4.479300225801524E-5 22-23 5.119200258058885E-5 1.983690099997818E-4 0.0 2.4636151241908384E-4 5.7591002903162456E-5 24-25 6.718950338702287E-5 2.3356351177393662E-4 0.0 2.751570138706651E-4 7.998750403217008E-5 26-27 7.678800387088328E-5 2.5596001290294424E-4 0.0 3.3914701709640116E-4 8.638650435474369E-5 28-29 7.678800387088328E-5 2.5915951306423104E-4 0.0 6.49498532741221E-4 9.278550467731728E-5 30-31 8.318700419345688E-5 3.0395251532224627E-4 0.0 0.0017085330861271529 9.918450499989091E-5 32-33 8.318700419345688E-5 3.135510158061067E-4 0.0 0.003909789197092474 1.023840051611777E-4 34-35 8.318700419345688E-5 3.935385198382768E-4 0.0 0.006616566333541109 1.119825056450381E-4 36-37 8.318700419345688E-5 4.6712702354787325E-4 0.0 0.0109582880524073 1.1518200580632491E-4 38-39 8.318700419345688E-5 5.087205256446017E-4 0.0 0.017357288374980906 1.1518200580632491E-4 40-41 8.958600451603049E-5 5.727105288703378E-4 0.0 0.02417862271884437 1.4397750725790614E-4 42-43 8.958600451603049E-5 5.951070299993453E-4 0.0 0.030622416043675993 1.5037650758047973E-4 44-45 1.055835053224645E-4 6.239025314509266E-4 0.0 0.03783408940721644 1.5357600774176656E-4 46-47 1.2158100612889852E-4 6.49498532741221E-4 0.0 0.045349715286079145 1.6317450822562695E-4 48-49 1.2478050629018532E-4 6.590970332250814E-4 0.0 0.05306371017494163 1.8557100935463457E-4 50-51 1.3437900677404574E-4 7.294860367733911E-4 3.1995001612868033E-6 0.06110085458009408 1.8557100935463457E-4 52-53 1.4717700741919294E-4 7.422840374185383E-4 6.399000322573607E-6 0.06834132344508612 2.047680103223554E-4 54-55 1.4717700741919294E-4 7.422840374185383E-4 6.399000322573607E-6 0.07575136581862635 2.2396501129007623E-4 56-57 1.4717700741919294E-4 7.422840374185383E-4 6.399000322573607E-6 0.08335657770200508 2.2396501129007623E-4 58-59 1.4717700741919294E-4 7.614810383862592E-4 6.399000322573607E-6 0.0907698195757066 2.2716451145136303E-4 60-61 1.4717700741919294E-4 7.838775395152668E-4 6.399000322573607E-6 0.09827264745392415 2.3676301193522342E-4 62-63 1.4717700741919294E-4 7.902765398378404E-4 6.399000322573607E-6 0.10544272731536788 2.4316201225779705E-4 64-65 1.4717700741919294E-4 8.510670429022896E-4 6.399000322573607E-6 0.11202089964697355 2.4636151241908384E-4 66-67 1.4717700741919294E-4 8.542665430635764E-4 6.399000322573607E-6 0.11864706448099852 2.4956101258037064E-4 68-69 1.5997500806434016E-4 8.76663044192584E-4 6.399000322573607E-6 0.12540440882163625 2.4956101258037064E-4 70-71 1.6317450822562695E-4 8.862615446764445E-4 6.399000322573607E-6 0.1314290676253393 2.4956101258037064E-4 72-73 1.6957350854820058E-4 8.894610448377313E-4 6.399000322573607E-6 0.13556922083404443 2.815560141932387E-4 74-75 1.7277300870948738E-4 9.054585456441653E-4 6.399000322573607E-6 0.1388711050004924 2.815560141932387E-4 76-77 1.7277300870948738E-4 9.438525475796069E-4 6.399000322573607E-6 0.14208340316242435 2.815560141932387E-4 78-79 1.7917200903206097E-4 9.59850048386041E-4 6.399000322573607E-6 0.14433905077613154 2.815560141932387E-4 80-81 1.7917200903206097E-4 9.662490487086146E-4 6.399000322573607E-6 0.14498534980871147 2.9435401483838587E-4 82-83 1.8877050951592137E-4 9.726480490311882E-4 6.399000322573607E-6 0.14555486083742053 3.167505159673935E-4 84-85 1.983690099997818E-4 9.854460496763354E-4 6.399000322573607E-6 0.14579482334951704 3.199500161286803E-4 86-87 1.983690099997818E-4 9.91845049998909E-4 6.399000322573607E-6 0.1459260028561298 3.231495162899671E-4 88 1.983690099997818E-4 0.0010430370525794977 6.399000322573607E-6 0.14594200035693625 3.263490164512539E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13165 0.0 40.80982 1 GTATCAA 23340 0.0 30.103035 1 ATCAACG 28305 0.0 29.787071 3 TCAACGC 28925 0.0 29.148592 4 CAACGCA 29665 0.0 28.378927 5 AACGCAG 30700 0.0 27.449324 6 TATCAAC 32285 0.0 26.427845 2 ACGCAGA 34700 0.0 24.21239 7 TTCAACG 2480 0.0 23.07182 1 CGCAGAG 36480 0.0 23.042505 8 TCGCAGA 5225 0.0 21.579586 1 ACATGGG 37670 0.0 21.052757 3 TACATGG 38705 0.0 20.946396 2 GTACATG 36795 0.0 18.69492 1 GCAGAGT 45425 0.0 18.560595 9 CATGGGG 27055 0.0 18.349648 4 AGAGTAC 40315 0.0 17.537226 10-11 GAGTACT 26460 0.0 17.513935 12-13 CAGAGTA 44680 0.0 16.765553 10-11 GTACTTT 30955 0.0 15.032269 14-15 >>END_MODULE