##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140030_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9470142 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 20.25115600167347 18.0 18.0 18.0 18.0 32.0 2 29.56992239398311 30.0 27.0 32.0 27.0 33.0 3 31.665986529029873 32.0 32.0 33.0 28.0 33.0 4 32.223504990738256 33.0 33.0 33.0 32.0 33.0 5 32.81977968228988 33.0 33.0 34.0 32.0 34.0 6 36.86368293104792 38.0 37.0 38.0 35.0 38.0 7 37.147032114196385 38.0 38.0 38.0 36.0 38.0 8 37.17719322476896 38.0 38.0 38.0 36.0 38.0 9 37.31055373826496 38.0 38.0 38.0 37.0 38.0 10-11 37.367011972998924 38.0 38.0 38.0 37.0 38.0 12-13 37.38357613856265 38.0 38.0 38.0 37.0 38.0 14-15 37.386839975577985 38.0 38.0 38.0 37.0 38.0 16-17 37.34442677839466 38.0 38.0 38.0 37.0 38.0 18-19 37.33362525081461 38.0 38.0 38.0 37.0 38.0 20-21 37.38193944685503 38.0 38.0 38.0 37.0 38.0 22-23 37.39713275946325 38.0 38.0 38.0 37.0 38.0 24-25 37.40462184978455 38.0 38.0 38.0 37.0 38.0 26-27 37.30893285811724 38.0 38.0 38.0 37.0 38.0 28-29 37.218578566033656 38.0 38.0 38.0 37.0 38.0 30-31 37.30143177915568 38.0 38.0 38.0 37.0 38.0 32-33 37.32380046927176 38.0 38.0 38.0 37.0 38.0 34-35 37.278811837705646 38.0 38.0 38.0 37.0 38.0 36-37 37.28073966986034 38.0 38.0 38.0 37.0 38.0 38-39 37.27975296605099 38.0 38.0 38.0 37.0 38.0 40-41 37.23816952098946 38.0 38.0 38.0 37.0 38.0 42-43 37.234325218345205 38.0 38.0 38.0 37.0 38.0 44-45 37.167961949758066 38.0 38.0 38.0 36.5 38.0 46-47 37.14392734510455 38.0 38.0 38.0 36.0 38.0 48-49 37.11887129468858 38.0 38.0 38.0 36.0 38.0 50-51 37.108105043465635 38.0 38.0 38.0 36.0 38.0 52-53 37.08758097752744 38.0 38.0 38.0 36.0 38.0 54-55 37.03712102234563 38.0 38.0 38.0 36.0 38.0 56-57 37.03746094794732 38.0 38.0 38.0 36.0 38.0 58-59 37.04338114753355 38.0 38.0 38.0 36.0 38.0 60-61 37.05058112009769 38.0 38.0 38.0 36.0 38.0 62-63 36.980600140487994 38.0 38.0 38.0 36.0 38.0 64-65 37.01024084194722 38.0 38.0 38.0 36.0 38.0 66-67 37.027550534820406 38.0 38.0 38.0 36.0 38.0 68-69 36.997438189090744 38.0 38.0 38.0 36.0 38.0 70-71 36.9505076504862 38.0 38.0 38.0 36.0 38.0 72-73 36.959929914128004 38.0 38.0 38.0 36.0 38.0 74-75 36.978893067707105 38.0 38.0 38.0 36.0 38.0 76-77 36.91335047011722 38.0 38.0 38.0 35.5 38.0 78-79 36.93555543249572 38.0 38.0 38.0 36.0 38.0 80-81 36.91016013791686 38.0 38.0 38.0 35.5 38.0 82-83 36.859810962441685 38.0 38.0 38.0 35.0 38.0 84-85 36.883117369847554 38.0 38.0 38.0 35.0 38.0 86-87 36.90270333253171 38.0 38.0 38.0 35.0 38.0 88-89 36.814354475397565 38.0 38.0 38.0 35.0 38.0 90-91 36.77101290665516 38.0 38.0 38.0 35.0 38.0 92-93 36.821341616439064 38.0 38.0 38.0 35.0 38.0 94-95 36.80213786663461 38.0 38.0 38.0 35.0 38.0 96-97 36.75288834244262 38.0 38.0 38.0 35.0 38.0 98-99 36.767511902455034 38.0 38.0 38.0 35.0 38.0 100 35.10573824884972 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 11.0 19 37.0 20 131.0 21 344.0 22 898.0 23 2292.0 24 4918.0 25 9216.0 26 16465.0 27 26041.0 28 39982.0 29 57895.0 30 79774.0 31 105656.0 32 139419.0 33 190614.0 34 287399.0 35 536930.0 36 1796097.0 37 6176023.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.473609160242795 14.126620276654775 24.616399627376232 23.7833709357262 2 14.309188069995592 21.694781882293384 41.49677211707241 22.49925793063861 3 18.077616998773617 26.684393961568897 30.621135353619827 24.616853686037654 4 11.879143023922783 18.18166074911701 39.93155958900696 30.007636637953244 5 12.6072948796876 38.10998602946379 36.44223346951878 12.840485621329831 6 29.089829330460017 38.884727258827084 19.25812086317018 12.767322547542722 7 25.733054491831425 32.918242453777054 24.176730321162264 17.17197273322925 8 24.153861684439367 37.02939195631914 21.772503516842725 17.044242842398774 9 25.67990004796127 16.442139938345168 21.49123001534718 36.38672999834638 10-11 23.791311682549214 26.982963930213504 29.658520431900598 19.56720395533668 12-13 24.694703627464087 24.594335544282227 29.635986450889547 21.074974377364143 14-15 21.751051884966454 25.812358463051556 27.261264931402295 25.175324720579688 16-17 21.370561286198242 28.907945625313747 27.882865959137675 21.83862712935033 18-19 21.36176521957115 28.27864143958982 29.506833160474255 20.852760180364772 20-21 22.21574563836396 27.480125951252653 29.295846795564064 21.008281614819325 22-23 21.88126901262797 27.423296615845942 29.152233340616217 21.543201030909874 24-25 21.62081859527147 27.4620545289456 29.311420360184957 21.60570651559797 26-27 21.61686415029935 27.64908331488613 29.162105912849224 21.571946621965292 28-29 21.5476653823935 27.730459206894757 29.150903787697263 21.57097162301448 30-31 21.842450297244884 27.55398329294716 29.129099593229927 21.474466816578026 32-33 21.6208673665515 27.688263271994725 29.107891891662767 21.582977469791008 34-35 21.7033720254385 27.723630623161217 29.16502624401765 21.407971107382636 36-37 21.67877027367062 27.663189095201734 29.167237776011145 21.4908028551165 38-39 21.51939934604942 27.789502573384826 29.185480124745194 21.505617955820554 40-41 21.737802128067663 27.639122276258384 29.110885411495897 21.512190184178056 42-43 21.650390782822065 27.712967292408546 28.960535051395997 21.676106873373392 44-45 21.740148060486593 27.86641049425792 28.849974348941586 21.543467096313897 46-47 21.7212428311705 27.785718321045707 28.70417951329508 21.788859334488716 48-49 21.70929747170038 27.82968277937185 28.7390083033361 21.722011445591676 50-51 21.649267381056212 27.956186125869426 28.661445481972393 21.733101011101972 52-53 21.801055155570147 27.887392128774174 28.526352558934892 21.785200156720784 54-55 21.759238974329016 27.844998695559664 28.564184908069173 21.83157742204215 56-57 21.79296342387297 27.92331690178566 28.531729666978173 21.751990007363194 58-59 21.7670442934207 27.945775622428613 28.567591860767845 21.719588223382843 60-61 21.813573530477544 27.936729711626956 28.59441610639316 21.655280651502334 62-63 21.79330716801906 27.86488326140803 28.558490267387203 21.783319303185706 64-65 21.693797008380113 27.87937464808624 28.61979550532283 21.807032838210816 66-67 21.807720048115673 27.91153662769168 28.437819934119286 21.84292339007336 68-69 21.794197385496616 27.920178178706212 28.514691823339767 21.770932612457404 70-71 21.807980967542527 27.693572841060554 28.537961558209602 21.960484633187317 72-73 21.821850682822145 27.74971482812665 28.542944794841524 21.885489694209685 74-75 21.686229980561343 27.91387231226358 28.507948847543652 21.89194885963143 76-77 21.824037919309344 27.83750305731169 28.392897731462014 21.945561291916952 78-79 21.81147711245731 27.882462060638126 28.353347097846292 21.952713729058264 80-81 21.82054863310273 27.90203408621741 28.311735306482237 21.965681974197622 82-83 21.910188306335744 27.843884027167455 28.387799794342587 21.858127872154213 84-85 21.98904645864226 27.88475176917335 28.29003902685214 21.83616274533225 86-87 21.776904246997407 27.942479527988297 28.35551251683644 21.925103708177858 88-89 21.896552621579556 27.862796541258106 28.305749019688964 21.934901817473378 90-91 21.986043718600314 27.917579504177333 28.289909219514186 21.806467557708167 92-93 21.976208350687 27.906406463760224 28.239085368694123 21.87829981685865 94-95 21.82363295996128 28.048060080273025 28.26666877301974 21.861638186745953 96-97 21.940229638929377 28.09933426847808 28.35027132427161 21.61016476832093 98-99 22.952697788693268 30.0411753584501 28.56873423608463 18.437392616772 100 21.78593647932341 30.950581966817577 22.629439401707216 24.6340421521518 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1514.0 1 1942.0 2 3172.5 3 4137.0 4 4765.5 5 5799.5 6 6906.0 7 9774.0 8 12527.0 9 12938.5 10 12559.0 11 12402.0 12 13400.0 13 16015.5 14 21212.0 15 26770.5 16 29706.5 17 30283.0 18 29404.5 19 28172.5 20 27630.0 21 28592.5 22 32586.0 23 40427.0 24 52216.0 25 68258.5 26 88662.0 27 111460.5 28 133707.0 29 157697.5 30 181482.0 31 204397.5 32 227944.0 33 249545.5 34 271568.0 35 292802.5 36 313022.0 37 331912.0 38 344219.0 39 352279.5 40 363323.5 41 372098.5 42 377649.0 43 385293.5 44 390449.5 45 394617.0 46 396619.5 47 395768.0 48 392009.0 49 382501.5 50 370691.0 51 356303.0 52 338970.0 53 321426.0 54 302814.0 55 279378.5 56 254511.5 57 229137.5 58 201684.0 59 174152.0 60 146012.5 61 118230.0 62 93596.5 63 72447.5 64 54418.5 65 39907.5 66 28668.0 67 21250.0 68 15908.0 69 11431.5 70 8191.5 71 5786.5 72 3935.5 73 2603.0 74 1659.0 75 1024.5 76 671.0 77 431.5 78 275.5 79 185.0 80 126.0 81 76.5 82 45.0 83 32.0 84 25.0 85 16.0 86 9.0 87 5.0 88 2.5 89 2.0 90 1.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 3.167851126202754E-5 3 0.0 4 6.335702252405507E-5 5 0.002238614795849946 6 2.95666105112257E-4 7 7.391652627806425E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 8.768816903827948E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 5.4414069301758665E-6 44-45 5.48392453330157E-6 46-47 1.6599793476436094E-5 48-49 1.1167290024795849E-4 50-51 4.901209641073714E-4 52-53 2.1018764757871214E-4 54-55 3.0928456809183275E-4 56-57 4.4492159556973657E-4 58-59 3.615909675976001E-4 60-61 3.532402046932789E-5 62-63 3.8620387084415666E-4 64-65 8.99172006449581E-5 66-67 1.028628734429057E-4 68-69 5.011037114796383E-4 70-71 8.643924993946165E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0010613008736601753 90-91 0.0 92-93 2.0734543313735275E-5 94-95 6.99010487743655E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 88.0 20-21 278.0 22-23 428.0 24-25 588.0 26-27 2094.0 28-29 6837.0 30-31 18096.0 32-33 22826.0 34-35 31822.0 36-37 53438.0 38-39 66286.0 40-41 62542.0 42-43 67916.0 44-45 79635.0 46-47 82290.0 48-49 80518.0 50-51 75295.0 52-53 70935.0 54-55 75359.0 56-57 79757.0 58-59 79982.0 60-61 79214.0 62-63 74403.0 64-65 76256.0 66-67 80778.0 68-69 83248.0 70-71 82845.0 72-73 76089.0 74-75 74642.0 76-77 78314.0 78-79 81873.0 80-81 82947.0 82-83 77016.0 84-85 73524.0 86-87 75550.0 88-89 80110.0 90-91 82138.0 92-93 80357.0 94-95 90653.0 96-97 280066.0 98-99 627671.0 100-101 6175438.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.4246139909958 #Duplication Level Percentage of deduplicated Percentage of total 1 89.80471147099578 76.71532811982567 2 7.108851343193347 12.145417638233273 3 1.7545764604582774 4.496520505570082 4 0.6443545924813615 2.2017496934418284 5 0.2761140614742867 1.1793468559463511 6 0.14772674669171842 0.7571700187371397 7 0.07998834148960067 0.47830812368703635 8 0.05269282734772624 0.3601011549018961 9 0.0336905975136373 0.25902056589556227 >10 0.09489219510172249 1.205829040411241 >50 0.00200146246738903 0.11759592146038571 >100 3.6130740063471415E-4 0.050363885142348755 >500 1.9296702209786463E-5 0.013582925901578483 >1k 1.9296682318386178E-5 0.019665550845575308 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.055950375400918E-5 0.0 1.055950375400918E-5 0.0 5 0.0 1.055950375400918E-5 0.0 2.111900750801836E-5 0.0 6 0.0 1.055950375400918E-5 0.0 2.111900750801836E-5 0.0 7 0.0 1.055950375400918E-5 0.0 4.223801501603672E-5 0.0 8 0.0 3.167851126202754E-5 0.0 4.223801501603672E-5 0.0 9 0.0 6.335702252405507E-5 0.0 9.503553378608261E-5 0.0 10-11 0.0 6.335702252405507E-5 0.0 1.1615454129410097E-4 0.0 12-13 0.0 6.335702252405507E-5 0.0 1.3199379692511475E-4 0.0 14-15 0.0 1.1615454129410097E-4 0.0 1.4783305255612852E-4 0.0 16-17 0.0 1.1615454129410097E-4 0.0 1.5311280443313312E-4 0.0 18-19 0.0 1.2671404504811015E-4 0.0 1.6367230818714227E-4 0.0 20-21 0.0 1.3727354880211935E-4 0.0 1.7951156381815605E-4 0.0 22-23 0.0 1.583925563101377E-4 0.0 2.111900750801836E-4 0.0 24-25 0.0 1.7423181194115147E-4 0.0 2.3230908258820194E-4 0.0 26-27 0.0 1.9535081944916982E-4 0.0 2.639875938502295E-4 0.0 28-29 0.0 2.0063057132617442E-4 0.0 6.335702252405508E-4 0.0 30-31 0.0 2.111900750801836E-4 0.0 0.0014466520142992576 0.0 32-33 0.0 2.1646982695718817E-4 0.0 0.003167851126202754 0.0 34-35 0.0 2.9566610511225704E-4 0.0 0.0055279002152238054 0.0 36-37 0.0 3.695826313903213E-4 0.0 0.008727429852688586 0.0 38-39 0.0 3.695826313903213E-4 0.0 0.01428700857917442 0.0 40-41 0.0 3.9070163889833964E-4 0.0 0.020284806711451636 0.0 42-43 0.0 4.0126114265234884E-4 0.0 0.026045016009263643 0.0 44-45 0.0 4.1710039828336256E-4 0.0 0.03250743230671726 0.0 46-47 0.0 4.3293965391437634E-4 0.0 0.03937638949870023 0.0 48-49 0.0 4.3821940579138097E-4 0.0 0.04690003592343177 0.0 50-51 0.0 5.068561801924406E-4 0.0 0.05471934845327557 0.0 52-53 0.0 5.068561801924406E-4 0.0 0.06173085894593766 0.0 54-55 0.0 5.068561801924406E-4 0.0 0.06862621489730567 0.0 56-57 0.0 5.068561801924406E-4 0.0 0.07509919069851329 0.0 58-59 0.0 5.068561801924406E-4 0.0 0.08173583880790805 0.0 60-61 0.0 5.174156839464498E-4 0.0 0.08824049312037771 0.0 62-63 5.27975187700459E-6 5.27975187700459E-4 0.0 0.09473458792909337 0.0 64-65 1.055950375400918E-5 5.807727064705048E-4 0.0 0.10078518358014062 0.0 66-67 1.055950375400918E-5 5.91332210224514E-4 0.0 0.10690969575746594 0.0 68-69 1.055950375400918E-5 6.124512177325325E-4 0.0 0.11268574431090897 5.27975187700459E-6 70-71 1.055950375400918E-5 6.282904733635462E-4 0.0 0.11798133544354455 1.055950375400918E-5 72-73 1.055950375400918E-5 6.335702252405508E-4 0.0 0.12213650017074718 1.055950375400918E-5 74-75 1.583925563101377E-5 6.335702252405508E-4 0.0 0.1251776372519018 1.055950375400918E-5 76-77 2.111900750801836E-5 6.441297289945599E-4 0.0 0.1283824466412436 1.055950375400918E-5 78-79 2.111900750801836E-5 6.546892327485691E-4 0.0 0.13056298416644652 1.055950375400918E-5 80-81 2.111900750801836E-5 6.546892327485691E-4 0.0 0.13113847712104 1.055950375400918E-5 82-83 2.111900750801836E-5 6.546892327485691E-4 0.0 0.13172452957938752 1.055950375400918E-5 84-85 2.639875938502295E-5 6.546892327485691E-4 0.0 0.13203075518825377 1.055950375400918E-5 86-87 3.167851126202754E-5 6.652487365025783E-4 0.0 0.13212051097016286 1.055950375400918E-5 88 3.167851126202754E-5 7.07486751518615E-4 0.0 0.13213107047391687 1.055950375400918E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9315 0.0 46.579323 1 GTATCAA 17340 0.0 33.951805 1 ATCAACG 21625 0.0 30.45024 3 TCAACGC 22190 0.0 29.713259 4 CAACGCA 22490 0.0 29.335817 5 TATCAAC 23290 0.0 28.474262 2 AACGCAG 23220 0.0 28.412798 6 ACGCAGA 26095 0.0 25.217234 7 TTCAACG 1495 0.0 24.18542 1 CGCAGAG 27335 0.0 24.04218 8 TACATGG 27415 0.0 22.35896 2 ACATGGG 27595 0.0 21.658175 3 GTACATG 27485 0.0 20.212654 1 GCAGAGT 32855 0.0 20.002829 9 CATGGGG 19210 0.0 18.888502 4 AGAGTAC 29965 0.0 18.148922 10-11 GAGTACT 19145 0.0 18.074512 12-13 TCGCAGA 3425 0.0 17.88454 1 CAGAGTA 32500 0.0 17.688747 10-11 GTACTTT 21565 0.0 15.997152 14-15 >>END_MODULE