##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140028_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11909787 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.40716252943902 33.0 31.0 34.0 31.0 34.0 2 32.5981315199004 34.0 31.0 34.0 31.0 34.0 3 32.69560614308216 34.0 31.0 34.0 31.0 34.0 4 36.18240620088336 37.0 35.0 37.0 35.0 37.0 5 35.98240262399319 37.0 35.0 37.0 35.0 37.0 6 36.04512792714093 37.0 35.0 37.0 35.0 37.0 7 36.032453812985906 37.0 35.0 37.0 35.0 37.0 8 36.03187000741491 37.0 35.0 37.0 35.0 37.0 9 37.911903462253356 39.0 38.0 39.0 35.0 39.0 10-11 37.755738284824076 39.0 37.5 39.0 35.0 39.0 12-13 37.76171454619633 39.0 37.5 39.0 35.0 39.0 14-15 39.11892328552979 40.0 39.0 41.0 36.0 41.0 16-17 39.07428264670057 40.0 38.0 41.0 36.0 41.0 18-19 39.10234293023041 40.0 38.5 41.0 36.0 41.0 20-21 39.111776927047984 40.0 39.0 41.0 36.0 41.0 22-23 39.0432009353444 40.0 39.0 41.0 36.0 41.0 24-25 39.06511259265772 40.0 39.0 41.0 36.0 41.0 26-27 38.95868035441687 40.0 38.5 41.0 35.5 41.0 28-29 38.880649938775356 40.0 38.0 41.0 35.0 41.0 30-31 38.77997933635149 40.0 38.0 41.0 35.0 41.0 32-33 38.71444804456944 40.0 38.0 41.0 35.0 41.0 34-35 38.65980285979287 40.0 38.0 41.0 35.0 41.0 36-37 38.64494605983622 40.0 38.0 41.0 35.0 41.0 38-39 38.55639638500266 40.0 38.0 41.0 35.0 41.0 40-41 38.54487787542409 40.0 38.0 41.0 35.0 41.0 42-43 38.50185044631019 40.0 38.0 41.0 34.0 41.0 44-45 38.41425385561453 40.0 38.0 41.0 34.0 41.0 46-47 38.35137515300029 40.0 38.0 41.0 34.0 41.0 48-49 38.35963860640669 40.0 38.0 41.0 34.0 41.0 50-51 38.282380645072834 40.0 38.0 41.0 34.0 41.0 52-53 38.11146254655016 40.0 37.0 41.0 33.0 41.0 54-55 37.945781135423104 40.0 37.0 41.0 33.0 41.0 56-57 37.816181822280726 39.5 37.0 41.0 33.0 41.0 58-59 37.661876383458164 39.0 36.0 41.0 33.0 41.0 60-61 37.47396046948024 39.0 36.0 41.0 32.5 41.0 62-63 37.32057953648992 39.0 35.5 40.5 32.0 41.0 64-65 37.1260381058414 39.0 35.0 40.0 32.0 41.0 66-67 36.850772684460516 38.0 35.0 40.0 32.0 41.0 68-69 36.611605905141445 37.5 35.0 40.0 32.0 41.0 70-71 36.32140768612034 37.0 35.0 39.5 31.0 41.0 72-73 36.015149285324384 36.5 35.0 39.0 31.0 41.0 74-75 35.582598356403665 36.0 34.0 39.0 31.0 40.5 76-77 33.6546172428513 34.5 32.0 36.5 28.0 39.0 78-79 34.73282951740481 35.0 34.0 37.0 30.0 39.0 80-81 34.705586602102684 35.0 34.0 37.0 30.5 39.0 82-83 34.457784373852164 35.0 34.0 36.5 30.5 39.0 84-85 34.1893528170138 35.0 34.0 36.0 30.0 37.0 86-87 33.9533932514861 35.0 34.0 36.0 30.0 37.0 88-89 33.7978500471131 35.0 34.0 35.0 30.0 37.0 90-91 33.71088168579702 35.0 34.0 35.0 30.0 36.0 92-93 33.5907029382701 35.0 34.0 35.0 30.0 36.0 94-95 33.49198155322767 35.0 33.5 35.0 30.0 36.0 96-97 33.481692769743375 35.0 33.0 35.0 30.0 36.0 98-99 33.60392795806612 35.0 34.0 35.0 30.0 35.0 100-101 32.38170250547156 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 8.0 19 15.0 20 66.0 21 276.0 22 1057.0 23 3331.0 24 8912.0 25 19112.0 26 35082.0 27 56979.0 28 84538.0 29 118487.0 30 157961.0 31 205790.0 32 272678.0 33 369482.0 34 536691.0 35 828489.0 36 1479003.0 37 2776136.0 38 3441459.0 39 1487558.0 40 26676.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.84648306472651 20.258960130857083 12.906460879611029 24.98809592480537 2 14.847925390450603 21.603160164621578 40.702376547042874 22.846537897884946 3 18.325989931808174 26.208407624486924 30.547789065881542 24.91781337782336 4 12.248122209847667 18.133697919955292 38.94144156247187 30.67673830772517 5 12.82742504127068 38.00812726541625 36.31986869286579 12.844579000447279 6 29.736887821755335 38.452157036897475 18.837608094922267 12.973347046424927 7 26.200432997557588 32.262222474494386 23.57742568644152 17.959918841506504 8 24.22339893333593 37.111078122000855 21.716054891267202 16.94946805339601 9 25.395718796891597 16.13987425295658 21.058998304167254 37.405408645984565 10-11 23.988272990795835 26.707456142210624 29.52318186793088 19.78108899906266 12-13 24.722766511515356 24.094610043526025 29.4005682644709 21.78205518048772 14-15 21.730347922346873 25.65857617568883 26.535943053207344 26.075132848756954 16-17 21.80765506766329 28.863436155158496 27.228879679156847 22.100029098021373 18-19 21.81312730445977 28.156460732673054 28.58694282273898 21.443469140128197 20-21 22.37759298853666 27.46815629586009 28.382988152923673 21.77126256267957 22-23 22.097399114481743 27.660159547134917 28.24620676027511 21.996234578108233 24-25 21.961673903738856 27.73659837573582 28.430251049945603 21.87147667057972 26-27 22.07507189217447 27.92226846921538 28.262550952247263 21.740108686362895 28-29 21.84760058127769 27.795349080496518 28.433499850164708 21.92355048806109 30-31 22.241511138373355 27.7815103314005 28.25505514160057 21.721923388625576 32-33 21.966191607866175 27.73776784625846 28.333633661261015 21.96240688461435 34-35 21.839057457783838 28.00042686033497 28.553081257070616 21.607434424810574 36-37 22.067340640076498 27.868730153350374 28.248609175784107 21.815320030789017 38-39 21.784024715548696 27.772705983252216 28.465840568342077 21.97742873285701 40-41 21.98773942398678 27.64802914198434 28.423960670534186 21.940270763494695 42-43 22.01176674687493 27.693845811555722 28.34015712477114 21.95423031679821 44-45 21.91036028918602 27.949415650209996 28.190642668749856 21.94958139185413 46-47 22.160766528061238 27.750310103954295 27.818762564614584 22.270160803369883 48-49 22.053605784146637 27.78196620390864 27.902217501034315 22.2622105109104 50-51 21.858475521618185 27.890269644553218 28.055437838834397 22.1958169949942 52-53 22.03179830796494 27.864412141222523 28.116563215867163 21.987226334945372 54-55 21.97209438986456 27.856030195228946 27.949151253865207 22.22272416104128 56-57 22.194335948147454 28.048283918791693 27.647511684961902 22.109868448098954 58-59 21.93472986673267 28.236844932756732 27.94521053176459 21.883214668746 60-61 22.197338759004477 28.401063350783794 27.53326043265038 21.86833745756135 62-63 21.957325163720533 28.56728446081472 27.569464919393376 21.905925456071373 64-65 21.985244437575922 28.380748205225288 27.608247787749313 22.025759569449477 66-67 22.099632525893238 28.231382783483117 27.548847548023947 22.120137142599706 68-69 22.120302538853075 28.11454695048292 27.641902607503503 22.123247903160497 70-71 22.093677544935364 27.93248045890293 27.72207082218905 22.251771173972656 72-73 22.079959795408687 27.98082029567214 27.730137022361557 22.209082886557617 74-75 22.019543282120267 28.062942401297324 27.708168108807875 22.209346207774527 76-77 22.121680611617382 28.046742709432674 27.614481840137024 22.21709483881292 78-79 22.12240961936838 28.00957120619765 27.582856642751814 22.28516253168216 80-81 22.051374712065325 28.05229930260145 27.645974743929617 22.2503512414036 82-83 22.12590772960481 28.00683558411054 27.73793560475716 22.129321081527493 84-85 22.224365622627133 27.969903062047585 27.66767611273152 22.138055202593762 86-87 22.086648596883805 27.996813637685324 27.733981984036216 22.182555781394655 88-89 22.12318641568013 28.01152595542132 27.671637788365068 22.19364984053348 90-91 22.150365272772213 28.024021169455427 27.69541546436627 22.130198093406094 92-93 22.15210772460213 27.990894922917448 27.7007791445003 22.156218207980125 94-95 22.032130273000273 28.05730966759811 27.770704574928285 22.13985548447334 96-97 22.050528282785894 28.07759043042251 27.77411995839849 22.097761328393105 98-99 22.299091926582516 28.6362452123573 27.839801267516478 21.224861593543704 100-101 26.294841170477596 35.678175298720326 28.44458255995273 9.582400970849347 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1893.0 1 1732.5 2 2431.0 3 3537.0 4 4873.5 5 7831.0 6 10353.0 7 11970.5 8 12813.5 9 12403.0 10 11211.5 11 10161.0 12 11107.0 13 14615.0 14 22361.0 15 32499.5 16 40505.0 17 45458.5 18 47390.0 19 47389.0 20 46757.5 21 46652.0 22 49179.0 23 56701.0 24 70057.5 25 88970.5 26 112858.0 27 138787.0 28 165218.5 29 191421.0 30 215232.0 31 238926.0 32 264629.5 33 292391.0 34 321237.0 35 348445.0 36 375700.5 37 401070.0 38 421981.0 39 439883.5 40 457160.5 41 474679.5 42 488107.5 43 498289.0 44 508526.5 45 520699.0 46 536857.5 47 553008.0 48 549642.0 49 532686.5 50 518988.5 51 498342.0 52 469086.0 53 439145.5 54 408122.0 55 373863.0 56 341069.0 57 307230.0 58 270696.5 59 235164.0 60 198834.5 61 162936.5 62 131010.5 63 103124.5 64 78856.0 65 59738.0 66 45373.0 67 34746.5 68 26586.0 69 19303.5 70 13808.5 71 9949.0 72 7102.5 73 4936.0 74 3335.0 75 2256.5 76 1542.0 77 1030.5 78 715.5 79 514.0 80 373.5 81 252.0 82 180.0 83 124.0 84 83.0 85 65.0 86 52.0 87 44.5 88 32.5 89 21.5 90 15.0 91 8.0 92 3.5 93 2.0 94 2.0 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004483707391240498 3 1.6792911577679767E-5 4 3.6104759892011503E-4 5 0.0 6 0.0 7 0.002107510402998811 8 0.0011167286199157047 9 3.358582315535953E-5 10-11 1.301450647270182E-4 12-13 1.301450647270182E-4 14-15 2.5189367366519653E-5 16-17 3.568493710256951E-4 18-19 0.0 20-21 9.656404553641307E-5 22-23 0.0 24-25 0.0 26-27 7.058706675192016E-4 28-29 2.0182628399674407E-4 30-31 2.1058786064592606E-5 32-33 0.0018669826401026858 34-35 4.875715055411017E-4 36-37 0.001291740813868334 38-39 0.003980285636644968 40-41 9.107729213678993E-5 42-43 8.663204914154858E-4 44-45 0.0018518523429291106 46-47 9.38929016429827E-5 48-49 2.57787290480553E-4 50-51 2.194799824196534E-4 52-53 0.0 54-55 1.7267080385912714E-4 56-57 0.0016896990424173457 58-59 0.0032963289357916684 60-61 0.0011804333496610486 62-63 0.0010482628545559292 64-65 4.959619275818216E-6 66-67 1.1061821200141228E-4 68-69 1.0191570959322383E-5 70-71 4.12830823270324E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 2.2200657983101304E-5 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 403.0 20-21 1159.0 22-23 2096.0 24-25 4520.0 26-27 7107.0 28-29 15359.0 30-31 32539.0 32-33 41147.0 34-35 56550.0 36-37 90009.0 38-39 105258.0 40-41 100220.0 42-43 109451.0 44-45 127993.0 46-47 129218.0 48-49 123115.0 50-51 113030.0 52-53 107884.0 54-55 118002.0 56-57 126169.0 58-59 130374.0 60-61 130354.0 62-63 125475.0 64-65 131282.0 66-67 137504.0 68-69 124323.0 70-71 118455.0 72-73 110049.0 74-75 109364.0 76-77 108485.0 78-79 116983.0 80-81 118711.0 82-83 111977.0 84-85 108641.0 86-87 113178.0 88-89 122838.0 90-91 130226.0 92-93 134621.0 94-95 145910.0 96-97 222513.0 98-99 961563.0 100-101 6985732.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.9863016939356 #Duplication Level Percentage of deduplicated Percentage of total 1 89.4522361904576 76.02214732079412 2 7.33495750670458 12.46741823153986 3 1.8247145881365314 4.652272334780901 4 0.6517809093954959 2.215697960169333 5 0.2993436874946307 1.272005646779693 6 0.15509660650870588 0.7908652195472696 7 0.09083426413068782 0.5403767722890087 8 0.05486733883595134 0.37303777691644385 9 0.034418288641576346 0.2632574756053767 >10 0.10013006500827479 1.2631660404319847 >50 0.0012205552950922752 0.06695879870759068 >100 3.6900579784358677E-4 0.05303151192068722 >500 3.099359308922906E-5 0.019764910517708945 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 8.396455788839885E-6 0.0 2 0.0 0.0 0.0 8.396455788839885E-6 0.0 3 0.0 0.0 0.0 1.679291157767977E-5 0.0 4 0.0 5.0378734733039306E-5 0.0 4.198227894419942E-5 0.0 5 0.0 6.717164631071908E-5 0.0 5.0378734733039306E-5 0.0 6 8.396455788839885E-6 6.717164631071908E-5 0.0 5.0378734733039306E-5 0.0 7 8.396455788839885E-6 6.717164631071908E-5 0.0 6.717164631071908E-5 0.0 8 8.396455788839885E-6 6.717164631071908E-5 0.0 9.236101367723872E-5 8.396455788839885E-6 9 8.396455788839885E-6 1.3434329262143816E-4 0.0 1.4273974841027802E-4 1.679291157767977E-5 10-11 4.198227894419942E-5 1.3434329262143816E-4 0.0 1.511362041991179E-4 1.679291157767977E-5 12-13 5.0378734733039306E-5 1.679291157767977E-4 0.0 1.511362041991179E-4 1.679291157767977E-5 14-15 5.4576962627459245E-5 2.0991139472099712E-4 0.0 1.6373088788237776E-4 2.9387595260939595E-5 16-17 5.877519052187919E-5 2.2670430629867687E-4 0.0 1.7632557156563758E-4 3.358582315535954E-5 18-19 5.877519052187919E-5 2.4349721787635662E-4 0.0 1.7632557156563758E-4 4.198227894419942E-5 20-21 6.297341841629913E-5 2.7288481313729625E-4 0.0 2.0991139472099712E-4 5.4576962627459245E-5 22-23 8.396455788839885E-5 2.980741805038159E-4 0.0 2.644883573484564E-4 6.297341841629913E-5 24-25 1.0495569736049856E-4 3.2326354787033554E-4 0.0 3.022724083982358E-4 7.136987420513902E-5 26-27 1.091539252549185E-4 3.358582315535954E-4 0.0 3.316600036591754E-4 7.556810209955896E-5 28-29 1.091539252549185E-4 3.4425468734243525E-4 0.0 7.178969699458101E-4 7.556810209955896E-5 30-31 1.091539252549185E-4 3.736422826033748E-4 0.0 0.0017884450830228955 7.97663299939789E-5 32-33 1.1755038104375838E-4 3.778405104977948E-4 0.0 0.003576890166045791 8.396455788839885E-5 34-35 1.301450647270182E-4 4.1982278944199423E-4 0.0 0.006133610953747535 9.236101367723872E-5 36-37 1.4273974841027802E-4 4.660032962806136E-4 0.0 0.009886826691358964 9.236101367723872E-5 38-39 1.4273974841027802E-4 4.8699443575271335E-4 0.0 0.016242943723510754 9.655924157165867E-5 40-41 1.679291157767977E-4 5.331749425913327E-4 0.0 0.02308185696352084 1.0075746946607861E-4 42-43 1.679291157767977E-4 5.919501331132118E-4 0.0 0.028694887658360306 1.0915392525491849E-4 44-45 1.8052379946005751E-4 6.50725323635091E-4 0.0 0.035462431024165256 1.2174860893817832E-4 46-47 2.0571316682657718E-4 6.885093746848705E-4 0.0 0.043241747312525405 1.301450647270182E-4 48-49 2.18307850509837E-4 6.927076025792904E-4 0.0 0.050332554226200685 1.4273974841027802E-4 50-51 2.18307850509837E-4 7.724739325732693E-4 0.0 0.05707910645253353 1.4273974841027802E-4 52-53 2.2670430629867687E-4 8.144562115174688E-4 0.0 0.06377947817202775 1.511362041991179E-4 54-55 2.3090253419309683E-4 8.228526673063086E-4 0.0 0.07040428178942243 1.595326599879578E-4 56-57 2.3510076208751676E-4 8.228526673063086E-4 0.0 0.0766512448963193 1.595326599879578E-4 58-59 2.4349721787635665E-4 8.270508952007286E-4 0.0 0.08344397762949077 1.595326599879578E-4 60-61 2.476954457707766E-4 8.312491230951486E-4 0.0 0.08988405921953097 1.7632557156563758E-4 62-63 2.5189367366519654E-4 8.438438067784083E-4 0.0 0.09577417295540214 1.7632557156563758E-4 64-65 2.5189367366519654E-4 8.900243136170277E-4 0.0 0.10161390795654028 1.7632557156563758E-4 66-67 2.5189367366519654E-4 9.152136809835474E-4 0.0 0.10760477916187755 1.7632557156563758E-4 68-69 2.602901294540364E-4 9.362048204556472E-4 0.0 0.11362503796247572 1.7632557156563758E-4 70-71 2.602901294540364E-4 9.529977320333269E-4 0.0 0.11969567549780698 1.7632557156563758E-4 72-73 2.686865852428763E-4 9.571959599277469E-4 0.0 0.12459080922270063 2.18307850509837E-4 74-75 2.770830410317162E-4 9.781870993998466E-4 0.0 0.12895696623289737 2.2250607840425694E-4 76-77 2.770830410317162E-4 9.991782388719462E-4 0.0 0.13253385639894316 2.2670430629867687E-4 78-79 2.812812689261361E-4 9.991782388719462E-4 0.0 0.13607716074183357 2.2670430629867687E-4 80-81 2.9387595260939596E-4 9.991782388719462E-4 0.0 0.13773546076012946 2.392989899819367E-4 82-83 2.980741805038159E-4 9.991782388719462E-4 0.0 0.13831481620955943 2.5189367366519654E-4 84-85 3.022724083982358E-4 0.0010033764667663663 0.0 0.13880600887320654 2.5189367366519654E-4 86-87 3.022724083982358E-4 0.001015971150449626 0.0 0.1390495060910829 2.7288481313729625E-4 88-89 3.064706362926558E-4 0.0010579534293938253 0.0 0.13909568659792151 2.770830410317162E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11075 0.0 43.114044 1 CTTATAC 11090 0.0 35.92978 1 GTATCAA 17665 0.0 31.009357 1 TATACAC 16855 0.0 26.723925 3 ATCAACG 19860 0.0 26.638418 3 TCAACGC 19875 0.0 26.57646 4 CAACGCA 20350 0.0 25.915142 5 AACGCAG 21090 0.0 25.183323 6 TTATACA 16910 0.0 24.793482 2 TATCAAC 22240 0.0 24.368582 2 TACATGG 27605 0.0 22.073463 2 ACACATC 18960 0.0 21.87034 6 GTACATG 28980 0.0 21.844238 1 ACATCTC 19015 0.0 21.719135 8 ACGCAGA 24815 0.0 21.352753 7 ACATGGG 28410 0.0 20.993195 3 CGCAGAG 25395 0.0 20.881012 8 TACACAT 22290 0.0 20.22637 5 CACATCT 21545 0.0 19.053265 7 CATGGGG 20815 0.0 18.982254 4 >>END_MODULE