##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140026_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5891891 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.42082448572114 33.0 31.0 34.0 31.0 34.0 2 32.61796696510509 34.0 31.0 34.0 31.0 34.0 3 32.71513882385129 34.0 31.0 34.0 31.0 34.0 4 36.20254617744965 37.0 37.0 37.0 35.0 37.0 5 36.000304146835035 37.0 35.0 37.0 35.0 37.0 6 36.06469722538995 37.0 35.0 37.0 35.0 37.0 7 36.053324306237165 37.0 35.0 37.0 35.0 37.0 8 36.05796644914171 37.0 35.0 37.0 35.0 37.0 9 37.94308499597158 39.0 38.0 39.0 35.0 39.0 10-11 37.79087138577411 39.0 38.0 39.0 35.0 39.0 12-13 37.79747138906677 39.0 38.0 39.0 35.0 39.0 14-15 39.15684506043985 40.0 39.0 41.0 36.0 41.0 16-17 39.121098727047055 40.0 39.0 41.0 36.0 41.0 18-19 39.160620418809515 40.0 39.0 41.0 36.0 41.0 20-21 39.169077172170915 40.0 39.0 41.0 36.0 41.0 22-23 39.10738723472383 40.0 39.0 41.0 36.0 41.0 24-25 39.13403490955576 40.0 39.0 41.0 36.0 41.0 26-27 39.02958007571449 40.0 39.0 41.0 36.0 41.0 28-29 38.951173563288734 40.0 39.0 41.0 35.0 41.0 30-31 38.85591918150182 40.0 38.0 41.0 35.0 41.0 32-33 38.78081191450674 40.0 38.0 41.0 35.0 41.0 34-35 38.73340621801406 40.0 38.0 41.0 35.0 41.0 36-37 38.72073221548395 40.0 38.0 41.0 35.0 41.0 38-39 38.64406999268419 40.0 38.0 41.0 35.0 41.0 40-41 38.61890976046266 40.0 38.0 41.0 35.0 41.0 42-43 38.57139935484989 40.0 38.0 41.0 35.0 41.0 44-45 38.479144172794015 40.0 38.0 41.0 34.0 41.0 46-47 38.41551001689442 40.0 38.0 41.0 34.0 41.0 48-49 38.42291478433346 40.0 38.0 41.0 34.0 41.0 50-51 38.360311545331214 40.0 38.0 41.0 34.0 41.0 52-53 38.18489123917857 40.0 37.5 41.0 34.0 41.0 54-55 38.02467091222367 40.0 37.0 41.0 33.0 41.0 56-57 37.90633258773923 40.0 37.0 41.0 33.0 41.0 58-59 37.752809474707796 39.0 36.5 41.0 33.0 41.0 60-61 37.58112797315667 39.0 36.0 41.0 33.0 41.0 62-63 37.42172351040959 39.0 36.0 41.0 33.0 41.0 64-65 37.21716061112442 39.0 35.0 40.0 32.0 41.0 66-67 36.934347332030356 38.0 35.0 40.0 32.0 41.0 68-69 36.68852864965232 37.5 35.0 40.0 32.0 41.0 70-71 36.39736075408077 37.0 35.0 39.5 32.0 41.0 72-73 36.095179389036964 36.5 35.0 39.0 31.0 41.0 74-75 35.66028531165399 36.0 34.5 39.0 31.0 40.5 76-77 33.73659672995183 34.5 32.0 36.5 28.0 39.0 78-79 34.794101437829745 35.0 34.0 37.0 30.0 39.0 80-81 34.763977096218234 35.0 34.0 37.0 31.0 39.0 82-83 34.51946495534842 35.0 34.0 36.5 31.0 39.0 84-85 34.25778696699269 35.0 34.0 36.0 30.5 37.0 86-87 34.019932401801526 35.0 34.0 36.0 30.0 37.0 88-89 33.86227854899521 35.0 34.0 35.0 30.0 37.0 90-91 33.78036798936362 35.0 34.0 35.0 30.0 36.0 92-93 33.659648060994485 35.0 34.0 35.0 30.0 36.0 94-95 33.561443748358386 35.0 34.0 35.0 30.0 36.0 96-97 33.54698833935454 35.0 34.0 35.0 30.0 36.0 98-99 33.66184953207591 35.0 34.0 35.0 31.0 35.0 100-101 32.44656128044207 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 9.0 20 29.0 21 96.0 22 479.0 23 1501.0 24 3903.0 25 8677.0 26 15878.0 27 26259.0 28 39008.0 29 54666.0 30 73534.0 31 96778.0 32 128751.0 33 175777.0 34 258113.0 35 401445.0 36 724164.0 37 1382376.0 38 1739085.0 39 749737.0 40 11624.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.00527470722049 20.295385641044618 13.42456946335226 24.274770188382643 2 14.716555520288951 21.597384764487927 41.01601763858219 22.67004207664093 3 18.158822014867553 26.593940722935983 30.451004609555742 24.79623265264072 4 12.250584110365036 18.007707575155308 39.53737237065473 30.20433594382493 5 12.808044140667233 38.30887231281095 36.04900362209688 12.834079924424943 6 29.552990712149967 38.510895737887886 19.11842904086311 12.817684509099031 7 26.206041937949863 32.75027530011447 23.828311171278084 17.215371590657583 8 24.3917544705603 36.810321695000006 21.652924739931937 17.144999094507764 9 25.7938158712766 16.347914904710525 21.372143976235805 36.486125247777075 10-11 23.988251971101935 26.83569528378199 29.51902295395597 19.657029791160106 12-13 24.79342770495821 24.465620843859114 29.44225480338717 21.29869664779551 14-15 21.886900628397733 25.80901254173216 26.98316049545736 25.320926334412757 16-17 21.533249008060686 28.866543587410952 27.665337009021336 21.934870395507026 18-19 21.545663353242617 28.30652332162968 29.133167942176797 21.014645382950906 20-21 22.384196896358436 27.58111404700993 28.917417131344436 21.1172719252872 22-23 22.070639715316553 27.49594319978944 28.739018588331135 21.69439849656287 24-25 21.7982123824162 27.550856943477005 28.905887541476133 21.745043132630666 26-27 21.76343342653019 27.77328024622994 28.738767967006275 21.724518360233592 28-29 21.694679591154227 27.91497238510508 28.75844095358819 21.631907070152497 30-31 22.034531214768744 27.726016488046024 28.660154104404654 21.57929819278057 32-33 21.766984258668913 27.89226794488699 28.62454753168452 21.71620026475958 34-35 21.860836372621186 27.920904433827452 28.653536600562425 21.564722592988932 36-37 21.848239194285107 27.874876357826047 28.61486164298716 21.66202280490169 38-39 21.69954362004548 27.980837799553537 28.71901277919368 21.6006058012073 40-41 21.973586121837002 27.842843300587617 28.558877847354967 21.624692730220413 42-43 21.858916227624317 27.901972112296892 28.399835156835152 21.83927650324364 44-45 21.947144115416958 28.06868769314918 28.21412656914154 21.77004162229233 46-47 21.941341677951456 28.018416847980017 28.027983994937884 22.012257479130646 48-49 21.934019791565966 28.035889308860558 28.08272268472965 21.94736821484383 50-51 21.872261010943244 28.177254937502695 27.971638487891987 21.978845563662073 52-53 22.057231010603243 28.111988067864026 27.827425752559265 22.00335516897347 54-55 22.056623111342834 27.99321230866272 27.93343423839017 22.016730341604276 56-57 22.051579293684963 28.10788107293945 27.83958825793314 22.000951375442447 58-59 21.996859518711922 28.1796220007414 27.848595440786784 21.97492303975989 60-61 22.071272058969296 28.124192206073793 27.851451823121653 21.953083911835257 62-63 22.042746690893964 28.138471697577465 27.808369205459865 22.010412406068706 64-65 21.991045368734746 28.114817031695555 27.84582851294189 22.04830908662781 66-67 22.122908215474965 28.16146769895641 27.62952165438786 22.08610243118077 68-69 22.069945273632346 28.15158025474851 27.69979567209565 22.078678799523487 70-71 22.024300150057734 27.910748949405416 27.802156026073423 22.26279487446343 72-73 22.059218326099316 28.017182802440498 27.795701860723383 22.127897010736802 74-75 21.97089432700211 28.133792815543586 27.712481253507633 22.18283160394667 76-77 22.027870863816133 28.06815236112078 27.678037991630582 22.225938783432504 78-79 22.053971498318965 28.096892096455424 27.63376815267623 22.215368252549386 80-81 21.994660952057206 28.10032092111281 27.65210022411035 22.252917902719638 82-83 22.06126078615856 28.062634240883273 27.794224609565312 22.08188036339286 84-85 22.216476009424188 28.02037074275227 27.663473603245976 22.09967964457757 86-87 21.983902639263462 28.10819858611496 27.718990205740372 22.188908568881207 88-89 22.062203442662696 28.05666193329408 27.705053163855503 22.176081460187717 90-91 22.12979603747702 28.03864429702456 27.758369424900337 22.073190240598077 92-93 22.119728532357964 28.022162451215117 27.72874763837511 22.129361378051804 94-95 21.99309032120646 28.126383839910314 27.763172218494645 22.117353620388577 96-97 21.995316565181547 28.132707525569632 27.837511379576245 22.034464529672576 98-99 22.21751230400105 28.731234976963442 27.839402896012928 21.211849823022575 100-101 26.19122919296987 35.77385591943561 28.52991738198939 9.504997505605125 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1329.0 1 1158.0 2 1516.5 3 2181.0 4 2954.0 5 4657.0 6 6084.5 7 7134.5 8 7822.0 9 7568.0 10 6811.5 11 6205.5 12 6794.5 13 8934.0 14 13563.5 15 19614.0 16 24453.0 17 27338.5 18 28023.0 19 27077.0 20 25764.0 21 24971.0 22 25637.0 23 28953.5 24 35367.0 25 44678.0 26 56437.0 27 69712.5 28 83814.5 29 98560.0 30 112203.5 31 125225.0 32 139187.5 33 152949.0 34 166144.0 35 178952.5 36 193038.0 37 205181.5 38 213059.5 39 219470.5 40 226560.0 41 232786.5 42 236901.0 43 241394.5 44 245640.5 45 249244.5 46 251046.0 47 251572.0 48 250566.0 49 246406.5 50 241139.0 51 232879.5 52 221541.5 53 210056.0 54 197131.5 55 181909.0 56 167129.0 57 151579.0 58 134331.0 59 116495.5 60 97481.0 61 79454.5 62 63469.5 63 49651.5 64 37606.5 65 28121.0 66 21365.5 67 16440.0 68 12541.5 69 9038.0 70 6465.5 71 4651.0 72 3251.0 73 2222.0 74 1534.0 75 1041.0 76 715.5 77 502.5 78 348.0 79 227.5 80 154.0 81 106.5 82 80.5 83 58.0 84 34.5 85 20.0 86 11.0 87 9.5 88 9.0 89 7.5 90 6.5 91 5.5 92 2.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004429817184330124 3 0.0 4 4.2431199083621876E-4 5 0.0 6 0.0 7 0.0023591746690493766 8 0.0011541286150745151 9 3.39449592668975E-5 10-11 1.5275231670103877E-4 12-13 1.1880735743414127E-4 14-15 2.545871945017313E-5 16-17 3.9885327138604565E-4 18-19 0.0 20-21 5.9406300224844354E-5 22-23 0.0 24-25 0.0 26-27 6.709449172058219E-4 28-29 1.359814473712279E-4 30-31 4.2559443199911745E-5 32-33 0.001852087827882491 34-35 5.566822423503295E-4 36-37 0.0014459857198581695 38-39 0.003771807877806604 40-41 1.1366586310730469E-4 42-43 9.34796283638005E-4 44-45 0.0019861733831390803 46-47 1.0810323859285617E-4 48-49 2.824573056670958E-4 50-51 2.9473691966761044E-4 52-53 0.0 54-55 1.785538920284615E-4 56-57 0.0017005523089890244 58-59 0.003372511799707773 60-61 0.0010203608637383865 62-63 0.0010610956264291017 64-65 0.0 66-67 1.1049759275971555E-4 68-69 0.0 70-71 6.176482487047143E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 1.109772602044978E-5 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 165.0 20-21 501.0 22-23 935.0 24-25 2339.0 26-27 3433.0 28-29 6837.0 30-31 15205.0 32-33 18639.0 34-35 25491.0 36-37 39790.0 38-39 48284.0 40-41 48034.0 42-43 53259.0 44-45 62414.0 46-47 63888.0 48-49 59923.0 50-51 55288.0 52-53 53063.0 54-55 56788.0 56-57 59164.0 58-59 58520.0 60-61 57160.0 62-63 54421.0 64-65 56104.0 66-67 59422.0 68-69 60489.0 70-71 60330.0 72-73 57222.0 74-75 57754.0 76-77 56240.0 78-79 59964.0 80-81 60691.0 82-83 57706.0 84-85 56667.0 86-87 59214.0 88-89 63718.0 90-91 66870.0 92-93 69184.0 94-95 74299.0 96-97 111724.0 98-99 477982.0 100-101 3482770.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.48370327709478 #Duplication Level Percentage of deduplicated Percentage of total 1 91.477728477066 80.94288183027349 2 6.324658347902832 11.192583851696694 3 1.3493521111080782 3.5818701544682585 4 0.44288078482386795 1.5675092780592796 5 0.17110294687677446 0.756991119064051 6 0.0900790091796702 0.47823145918491794 7 0.05092351214535868 0.3154130656948214 8 0.024515797114366637 0.17353988139752588 9 0.01642911230315329 0.13083378283244546 >10 0.050885223763036856 0.673637134146311 >50 9.022911382678352E-4 0.054109915858522865 >100 4.898728587171619E-4 0.09043965351592446 >500 2.625686038634219E-5 0.01691365489204814 >1k 2.6256859517950687E-5 0.025045218915675377 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.697247963344875E-5 0.0 0.0 0.0 3 0.0 1.697247963344875E-5 0.0 0.0 0.0 4 0.0 1.0183487780069251E-4 0.0 0.0 0.0 5 0.0 1.0183487780069251E-4 0.0 0.0 0.0 6 0.0 1.0183487780069251E-4 0.0 0.0 0.0 7 0.0 1.1880735743414126E-4 0.0 0.0 0.0 8 0.0 1.1880735743414126E-4 0.0 0.0 0.0 9 0.0 2.7155967413518E-4 0.0 0.0 0.0 10-11 1.697247963344875E-5 2.885321537686288E-4 0.0 5.940367871707064E-5 0.0 12-13 1.697247963344875E-5 2.9701839358535313E-4 0.0 8.486239816724377E-5 0.0 14-15 1.697247963344875E-5 3.818807917525969E-4 0.0 8.486239816724377E-5 8.486239816724376E-6 16-17 1.697247963344875E-5 3.903670315693213E-4 0.0 1.0183487780069251E-4 3.39449592668975E-5 18-19 1.697247963344875E-5 4.158257510194944E-4 0.0 1.1880735743414126E-4 3.39449592668975E-5 20-21 1.697247963344875E-5 4.243119908362188E-4 0.0 1.2729359725086563E-4 4.2431199083621876E-5 22-23 1.697247963344875E-5 4.582569501031163E-4 0.0 1.5275231670103877E-4 5.940367871707063E-5 24-25 1.697247963344875E-5 5.091743890034625E-4 0.0 1.782110361512119E-4 7.637615835051939E-5 26-27 1.697247963344875E-5 5.600918279038089E-4 0.0 2.9701839358535313E-4 8.486239816724377E-5 28-29 1.697247963344875E-5 5.770643075372576E-4 0.0 8.146790224055401E-4 8.486239816724377E-5 30-31 1.697247963344875E-5 6.873854251546745E-4 0.0 0.0022403673116152354 8.486239816724377E-5 32-33 1.697247963344875E-5 7.128441446048475E-4 0.0 0.004684404378831856 8.486239816724377E-5 34-35 1.697247963344875E-5 8.061927825888156E-4 0.0 0.007764909432302804 1.0183487780069251E-4 36-37 1.697247963344875E-5 9.25000140022957E-4 0.0 0.012712387245453115 1.0183487780069251E-4 38-39 1.697247963344875E-5 9.674313391065789E-4 0.0 0.02090160866859214 1.0183487780069251E-4 40-41 1.697247963344875E-5 0.001060779977090547 0.0 0.029175692489898403 1.0183487780069251E-4 42-43 1.697247963344875E-5 0.0010947249363574445 0.0 0.03760252862790571 1.0183487780069251E-4 44-45 1.697247963344875E-5 0.0011456423752577907 0.0 0.04656399787436665 1.0183487780069251E-4 46-47 1.697247963344875E-5 0.0011711010947079638 0.0 0.05578005431532932 1.0183487780069251E-4 48-49 1.697247963344875E-5 0.001179587334524688 0.0 0.06547134018602856 1.0183487780069251E-4 50-51 1.697247963344875E-5 0.0013153671715922782 0.0 0.07458556174919054 1.0183487780069251E-4 52-53 1.697247963344875E-5 0.0013238534114090026 0.0 0.0833094162807832 1.1880735743414126E-4 54-55 1.697247963344875E-5 0.0013238534114090026 0.0 0.09201629833274241 1.3577983706759E-4 56-57 1.697247963344875E-5 0.0013408258910424513 0.0 0.10022249223551488 1.3577983706759E-4 58-59 1.697247963344875E-5 0.0013577983706759003 0.0 0.10774130071313268 1.3577983706759E-4 60-61 1.697247963344875E-5 0.0013577983706759003 0.0 0.11503098071569892 1.3577983706759E-4 62-63 1.697247963344875E-5 0.0013832570901260734 0.0 0.12203212856449652 1.3577983706759E-4 64-65 1.697247963344875E-5 0.0014766057281100414 0.0 0.1291181388114614 1.3577983706759E-4 66-67 1.697247963344875E-5 0.0014935782077434901 0.0 0.1357374058685064 1.3577983706759E-4 68-69 1.697247963344875E-5 0.0015105506873769388 0.0 0.1431119482692399 1.3577983706759E-4 70-71 1.697247963344875E-5 0.0015105506873769388 0.0 0.14947662813178314 1.3577983706759E-4 72-73 1.697247963344875E-5 0.0015190369271936633 0.0 0.15504360145155435 1.6972479633448753E-4 74-75 1.697247963344875E-5 0.001552981886460561 0.0 0.15926974888028309 1.6972479633448753E-4 76-77 1.697247963344875E-5 0.0016378442846278045 0.0 0.16305461183854214 1.6972479633448753E-4 78-79 1.697247963344875E-5 0.0016802754837114263 0.0 0.1667206674393671 1.6972479633448753E-4 80-81 1.697247963344875E-5 0.0016802754837114263 0.0 0.16841791540271195 1.782110361512119E-4 82-83 1.697247963344875E-5 0.0016887617235281508 0.0 0.16905438338896628 2.0366975560138503E-4 84-85 1.697247963344875E-5 0.0017057342031615995 0.0 0.16949566785943596 2.0366975560138503E-4 86-87 1.697247963344875E-5 0.0017566516420619458 0.0 0.16966539265577044 2.0366975560138503E-4 88-89 1.697247963344875E-5 0.0018415140402291896 0.0 0.16972479633448753 2.0366975560138503E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6290 0.0 43.625282 1 GTATCAA 11435 0.0 35.446445 1 ATCAACG 12890 0.0 30.535898 3 TCAACGC 12920 0.0 30.464996 4 CAACGCA 13125 0.0 30.052645 5 TATCAAC 13820 0.0 28.905493 2 AACGCAG 13690 0.0 28.904003 6 ACGCAGA 15980 0.0 24.683416 7 CGCAGAG 16330 0.0 24.077126 8 GTACATG 17685 0.0 22.328112 1 TACATGG 17370 0.0 22.130985 2 ACATGGG 17850 0.0 20.99635 3 GCAGAGT 19465 0.0 20.199303 9 CATGGGG 12570 0.0 19.233866 4 AGAGTAC 17430 0.0 17.746132 10-11 GAGTACT 10830 0.0 17.573 12-13 CAGAGTA 19135 0.0 17.268776 10-11 TATACCG 425 1.8189894E-12 16.731325 5 GAGTACA 12435 0.0 15.978385 1 ATGGGGG 8145 0.0 15.6117935 5 >>END_MODULE