##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140025_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5799669 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.429834530211984 33.0 31.0 34.0 31.0 34.0 2 32.61613912793989 34.0 31.0 34.0 31.0 34.0 3 32.70905494779099 34.0 31.0 34.0 31.0 34.0 4 36.195021302077755 37.0 37.0 37.0 35.0 37.0 5 35.99950410963108 37.0 35.0 37.0 35.0 37.0 6 36.06579892749052 37.0 35.0 37.0 35.0 37.0 7 36.04999078395681 37.0 35.0 37.0 35.0 37.0 8 36.053173551800974 37.0 35.0 37.0 35.0 37.0 9 37.929213718920856 39.0 38.0 39.0 35.0 39.0 10-11 37.77589117585848 39.0 37.5 39.0 35.0 39.0 12-13 37.779111273419225 39.0 38.0 39.0 35.0 39.0 14-15 39.13744991308987 40.0 39.0 41.0 36.0 41.0 16-17 39.099461452024244 40.0 38.5 41.0 36.0 41.0 18-19 39.12917633747719 40.0 39.0 41.0 36.0 41.0 20-21 39.13769281766898 40.0 39.0 41.0 36.0 41.0 22-23 39.07255214995281 40.0 39.0 41.0 36.0 41.0 24-25 39.09362866304657 40.0 39.0 41.0 36.0 41.0 26-27 38.98588483483998 40.0 39.0 41.0 35.5 41.0 28-29 38.905993790391534 40.0 38.0 41.0 35.0 41.0 30-31 38.80552264833864 40.0 38.0 41.0 35.0 41.0 32-33 38.732933420396165 40.0 38.0 41.0 35.0 41.0 34-35 38.683273298167975 40.0 38.0 41.0 35.0 41.0 36-37 38.66539553719733 40.0 38.0 41.0 35.0 41.0 38-39 38.585749186270654 40.0 38.0 41.0 35.0 41.0 40-41 38.55369042663634 40.0 38.0 41.0 35.0 41.0 42-43 38.50174788204401 40.0 38.0 41.0 34.0 41.0 44-45 38.40630590513713 40.0 38.0 41.0 34.0 41.0 46-47 38.33228869525918 40.0 38.0 41.0 34.0 41.0 48-49 38.32855154478666 40.0 38.0 41.0 34.0 41.0 50-51 38.253045496753266 40.0 38.0 41.0 34.0 41.0 52-53 38.06435080712768 40.0 37.0 41.0 33.0 41.0 54-55 37.89001517650033 40.0 37.0 41.0 33.0 41.0 56-57 37.758172903600745 39.0 36.5 41.0 33.0 41.0 58-59 37.589199937305715 39.0 36.0 41.0 33.0 41.0 60-61 37.39974652583989 39.0 36.0 41.0 32.5 41.0 62-63 37.225780371240496 39.0 35.0 40.0 32.0 41.0 64-65 37.0025830399889 38.5 35.0 40.0 32.0 41.0 66-67 36.71154235750603 38.0 35.0 40.0 32.0 41.0 68-69 36.46005843191093 37.0 35.0 40.0 31.5 41.0 70-71 36.1683196919614 37.0 35.0 39.0 31.0 41.0 72-73 35.861872606601466 36.0 35.0 39.0 31.0 41.0 74-75 35.42984453451595 36.0 34.0 39.0 31.0 40.0 76-77 33.52040150761897 34.5 32.0 36.5 28.0 39.0 78-79 34.60919238870957 35.0 34.0 37.0 30.0 39.0 80-81 34.59641373000372 35.0 34.0 37.0 30.5 39.0 82-83 34.36593042456796 35.0 34.0 36.0 30.5 38.5 84-85 34.11243921089543 35.0 34.0 36.0 30.0 37.0 86-87 33.89498925424245 35.0 34.0 35.5 30.0 37.0 88-89 33.75074104638587 35.0 34.0 35.0 30.0 36.5 90-91 33.675909332739806 35.0 34.0 35.0 30.0 36.0 92-93 33.560890108623454 35.0 34.0 35.0 30.0 36.0 94-95 33.46691990114547 35.0 33.0 35.0 30.0 36.0 96-97 33.46034193215548 35.0 33.0 35.0 30.0 35.5 98-99 33.58667085629138 35.0 33.0 35.0 30.0 35.0 100-101 32.35024451728479 34.0 31.5 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 9.0 20 29.0 21 132.0 22 469.0 23 1624.0 24 4277.0 25 9210.0 26 16741.0 27 27545.0 28 40916.0 29 56693.0 30 75883.0 31 100034.0 32 132047.0 33 180745.0 34 267198.0 35 416525.0 36 754498.0 37 1391076.0 38 1621777.0 39 689846.0 40 12394.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.47875180462885 19.884565826084213 13.129852755390006 24.50682961389693 2 15.0898619287488 21.404777082858786 40.38785411655729 23.117506871835122 3 18.451628343489375 26.17191642209803 30.131661007433703 25.244794226978897 4 12.560564062207957 17.64196216181545 38.846142970154716 30.951330805821875 5 13.159233742477372 37.95601093786559 35.712831197780424 13.17192412187661 6 30.259864830217037 37.966821899663586 18.694911726858894 13.078401543260487 7 26.701010787585282 32.31351054403136 23.44709586299734 17.538382805386014 8 24.793038021827652 36.44044709166952 21.350379059579115 17.416135826923714 9 25.92586845132209 16.100245824628086 20.980046599259303 36.993839124790526 10-11 24.394156243138067 26.507556176358282 29.110053788502583 19.988233792001065 12-13 25.06738323716106 24.10651689701917 29.120093550279307 21.706006315540456 14-15 22.163020552471327 25.441251588991953 26.533150391811255 25.86257746672546 16-17 21.973638620273935 28.51363575976068 27.166642656632284 22.3460829633331 18-19 21.96930548967536 27.92702480089812 28.639755130853157 21.463914578573362 20-21 22.780914823846686 27.200044487188162 28.388904240034247 21.630136448930905 22-23 22.491232466117825 27.143127764953785 28.248044404294433 22.11759536463396 24-25 22.20544166221207 27.219936995709958 28.412354332980932 22.162267009097036 26-27 22.214057850917353 27.372418084684508 28.254808686231474 22.15871537816666 28-29 22.136997367902747 27.517759511293207 28.256599735831827 22.08864338497222 30-31 22.45069042656809 27.35223387342701 28.143883682526415 22.05319201747848 32-33 22.19724515287935 27.53084050406291 28.1087771846049 22.16313715845284 34-35 22.26008645332509 27.54703310122238 28.19931431889289 21.993566126559646 36-37 22.27340432510441 27.486226575995452 28.117892987558218 22.122476111341918 38-39 22.137971153862253 27.594266023534153 28.183100119509984 22.084662703093606 40-41 22.36151045922253 27.41195051778444 28.120672576771856 22.105866446221174 42-43 22.22118540071657 27.567670530993045 27.964330949839056 22.24681311845133 44-45 22.34662260387284 27.681930579010388 27.78184861308844 22.189598204028336 46-47 22.40090347622991 27.576031656095957 27.570052553836643 22.45301231383749 48-49 22.36038655225765 27.6944691370418 27.580062589290407 22.365081721410146 50-51 22.30542962218178 27.82227713147182 27.497695568255036 22.374597678091362 52-53 22.480795114638354 27.7123623722767 27.360048638035718 22.446793875049227 54-55 22.441561244598777 27.62490324472197 27.444634015550562 22.48890149512869 56-57 22.408261464360294 27.73765515829839 27.409753069375565 22.44433030796575 58-59 22.43892274000394 27.790049546132273 27.37909367850567 22.391934035358123 60-61 22.49279848185093 27.738648725240168 27.382926374175504 22.385626418733402 62-63 22.467953030239922 27.75150667228813 27.36576540510424 22.41477489236771 64-65 22.41800962279974 27.787161940447845 27.337432254815386 22.45739618193703 66-67 22.494742687072865 27.746908344592136 27.19522112782601 22.563127840508994 68-69 22.442579056861305 27.770947305213152 27.300492476382658 22.48598116154288 70-71 22.414642697531644 27.512321993118043 27.372124349196405 22.70091096015391 72-73 22.471760310040974 27.6266218268237 27.324629045399707 22.576988817735618 74-75 22.375012413659377 27.741756418585805 27.29387802290033 22.58935314485448 76-77 22.479674898232027 27.69357732102779 27.23717226414486 22.58957551659532 78-79 22.455145523948303 27.692172438557073 27.21193709026831 22.64074494722631 80-81 22.407900618030567 27.724921056399992 27.218944860520537 22.648233465048904 82-83 22.470445816050315 27.672099568233076 27.356998651066956 22.50045596464965 84-85 22.579116105704756 27.655829591542048 27.224695662433678 22.540358640319518 86-87 22.418249136058293 27.66869811933776 27.336731378559655 22.576321366044297 88-89 22.441417878148624 27.698601823151293 27.265417523915165 22.594562774784922 90-91 22.520007697607088 27.684582203313646 27.306819989264362 22.4885901098149 92-93 22.52889133369036 27.65033307727538 27.29835436320326 22.522421225830996 94-95 22.38138569867712 27.697989963248858 27.380844697037848 22.53977964103617 96-97 22.377257156744975 27.702245127414145 27.411153542768307 22.50934417307257 98-99 22.651823155082425 28.319885866654943 27.421067453518823 21.60722352474381 100-101 26.804093944194456 35.40331981174746 27.933225344081986 9.859360899976103 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1209.0 1 1069.5 2 1440.0 3 2057.0 4 2775.0 5 4436.0 6 5833.5 7 6816.5 8 7398.0 9 7210.0 10 6494.0 11 5717.5 12 6100.5 13 8022.5 14 12382.5 15 18084.5 16 22590.5 17 25296.0 18 26058.5 19 25339.5 20 24173.0 21 23337.5 22 23783.5 23 26604.5 24 32253.5 25 40381.5 26 50579.5 27 61779.0 28 74329.0 29 88530.5 30 101726.5 31 113852.0 32 126456.5 33 139148.5 34 150936.5 35 162409.5 36 174755.0 37 185313.5 38 193498.5 39 200473.5 40 207720.5 41 215309.5 42 220900.0 43 227374.0 44 235251.5 45 242315.5 46 246399.0 47 248259.5 48 249764.0 49 248488.5 50 245338.5 51 240952.0 52 233354.0 53 223916.5 54 212878.0 55 198585.0 56 183842.0 57 167512.0 58 149992.0 59 131934.5 60 111479.0 61 91636.5 62 73697.0 63 57900.0 64 44088.5 65 33220.5 66 25352.0 67 19526.5 68 14808.0 69 10575.5 70 7538.5 71 5467.0 72 3889.5 73 2758.0 74 1904.0 75 1297.5 76 925.5 77 639.0 78 416.5 79 268.5 80 182.5 81 127.0 82 87.5 83 56.0 84 39.0 85 29.0 86 22.0 87 19.0 88 14.5 89 9.5 90 4.5 91 2.0 92 1.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0046899228214575695 3 3.448472662836448E-5 4 4.3105908285455603E-4 5 0.0 6 0.0 7 0.0022759919574720554 8 9.138452556516586E-4 9 1.0345417988509344E-4 10-11 1.638024514847313E-4 12-13 1.2069654319927568E-4 14-15 2.586354497127336E-5 16-17 1.8104481479891353E-4 18-19 0.0 20-21 1.6380914544734726E-4 22-23 0.0 24-25 0.0 26-27 6.643813673296417E-4 28-29 2.2450013103036495E-4 30-31 3.459439712603587E-5 32-33 0.001838485095219219 34-35 5.656541254765309E-4 36-37 0.0013906613504336284 38-39 0.003718850987844028 40-41 1.59966101405711E-4 42-43 8.694882846313822E-4 44-45 0.0018286738963862507 46-47 1.0987618419057511E-4 48-49 2.5003796872858475E-4 50-51 1.8721863963753723E-4 52-53 0.0 54-55 2.196536958930871E-4 56-57 0.0016412213003492904 58-59 0.0030758492712776022 60-61 0.0011457895739667918 62-63 0.0010088162550063754 64-65 2.019305367030963E-5 66-67 9.191544432742814E-5 68-69 2.0677511056265163E-5 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 4.5144994435879434E-5 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 149.0 20-21 515.0 22-23 991.0 24-25 2474.0 26-27 3434.0 28-29 7276.0 30-31 15032.0 32-33 18664.0 34-35 25271.0 36-37 40027.0 38-39 48025.0 40-41 47473.0 42-43 52292.0 44-45 61384.0 46-47 62514.0 48-49 59125.0 50-51 54316.0 52-53 51530.0 54-55 55716.0 56-57 58202.0 58-59 58597.0 60-61 57207.0 62-63 53800.0 64-65 55198.0 66-67 59381.0 68-69 60005.0 70-71 59212.0 72-73 55966.0 74-75 56001.0 76-77 55317.0 78-79 59166.0 80-81 60802.0 82-83 57207.0 84-85 56155.0 86-87 58836.0 88-89 62565.0 90-91 66393.0 92-93 68616.0 94-95 73902.0 96-97 110789.0 98-99 473085.0 100-101 3417059.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.30283873041648 #Duplication Level Percentage of deduplicated Percentage of total 1 91.3769161073388 80.68841086709133 2 6.366930904710265 11.244361457726704 3 1.3706826772085943 3.6310551418837793 4 0.45428238874755233 1.604576980465739 5 0.18378319492660164 0.8114288911482199 6 0.09024446450627231 0.47813054373660946 7 0.04700027500348366 0.29051803927424896 8 0.03090475737425339 0.21831822451370775 9 0.022016808560324418 0.17497320260947022 >10 0.056033466979097994 0.7402873009170619 >50 9.279918169542823E-4 0.0537738571208949 >100 2.4984441740413804E-4 0.04963007348599465 >500 2.7118410440541086E-5 0.014535420026200995 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 6.896945325672897E-5 0.0 0.0 0.0 3 0.0 6.896945325672897E-5 0.0 0.0 0.0 4 0.0 1.7242363314182242E-4 0.0 1.724236331418224E-5 0.0 5 1.724236331418224E-5 1.7242363314182242E-4 0.0 1.724236331418224E-5 0.0 6 5.172708994254672E-5 1.8966599645600464E-4 0.0 1.724236331418224E-5 0.0 7 5.172708994254672E-5 1.8966599645600464E-4 0.0 1.724236331418224E-5 0.0 8 5.172708994254672E-5 2.0690835977018687E-4 0.0 1.724236331418224E-5 0.0 9 5.172708994254672E-5 3.4484726628364483E-4 0.0 1.724236331418224E-5 0.0 10-11 5.172708994254672E-5 3.4484726628364483E-4 0.0 5.172708994254672E-5 0.0 12-13 5.172708994254672E-5 3.6208962959782706E-4 0.0 5.172708994254672E-5 0.0 14-15 5.172708994254672E-5 4.3968026451164714E-4 0.0 6.896945325672897E-5 0.0 16-17 6.896945325672897E-5 4.5692262782582937E-4 0.0 8.621181657091121E-5 0.0 18-19 6.896945325672897E-5 5.000285361112849E-4 0.0 8.621181657091121E-5 0.0 20-21 6.896945325672897E-5 5.345132627396495E-4 0.0 9.483299822800232E-5 0.0 22-23 1.1207536154218456E-4 5.77619171025105E-4 0.0 1.2069654319927568E-4 0.0 24-25 1.3793890651345793E-4 6.207250793105606E-4 0.0 1.2069654319927568E-4 0.0 26-27 1.3793890651345793E-4 6.207250793105606E-4 0.0 1.4656008817054905E-4 0.0 28-29 1.3793890651345793E-4 6.293462609676518E-4 0.0 3.5346844794073595E-4 0.0 30-31 1.5518126982764016E-4 6.724521692531073E-4 0.0 0.001362146701820397 0.0 32-33 1.5518126982764016E-4 6.896945325672897E-4 0.0 0.003353639664608446 0.0 34-35 1.6380245148473128E-4 8.276334390807476E-4 0.0 0.006215871974762698 0.0 36-37 1.7242363314182242E-4 9.655723455942054E-4 0.0 0.010233342626967158 0.0 38-39 1.7242363314182242E-4 9.655723455942054E-4 0.0 0.016725092414756774 0.0 40-41 1.7242363314182242E-4 0.00115523834205021 0.0 0.02324270574751766 0.0 42-43 1.7242363314182242E-4 0.0011983442503356657 0.0 0.029691349627021815 0.0 44-45 1.8104481479891353E-4 0.0013535255201633058 0.0 0.03680382449412199 0.0 46-47 2.069083597701869E-4 0.0014656008817054904 0.0 0.04427838899082 0.0 48-49 2.3277190474146024E-4 0.0014656008817054904 0.0 0.052261603205286375 0.0 50-51 2.586354497127336E-4 0.0016294033331902217 0.0 0.060158605603181835 0.0 52-53 2.586354497127336E-4 0.0016380245148473129 0.0 0.06770213955313656 0.0 54-55 2.586354497127336E-4 0.001646645696504404 0.0 0.0752542946847484 0.0 56-57 2.586354497127336E-4 0.0016897516047898597 0.0 0.0827288591814464 0.0 58-59 2.586354497127336E-4 0.0016897516047898597 0.0 0.09010859067991639 0.0 60-61 2.7587781302691587E-4 0.0017414786947324064 0.0 0.0978590329896413 0.0 62-63 2.931201763410981E-4 0.0017759634213607707 0.0 0.10484219013188512 0.0 64-65 2.931201763410981E-4 0.002017356507759322 0.0 0.11117013746818999 0.0 66-67 2.931201763410981E-4 0.0020345988710735044 0.0 0.11804121924889162 0.0 68-69 2.931201763410981E-4 0.0020432200527305956 0.0 0.12468815030650887 0.0 70-71 3.103625396552803E-4 0.0020604624160447775 0.0 0.1314730202706396 0.0 72-73 3.2760490296946255E-4 0.0020690835977018687 0.0 0.13711127307437718 0.0 74-75 3.2760490296946255E-4 0.0021121895059873245 0.0 0.14169774171594968 0.0 76-77 3.448472662836448E-4 0.0021639165959298715 0.0 0.1463014527208363 0.0 78-79 3.6208962959782706E-4 0.0021897801409011446 0.0 0.1501120150132706 0.0 80-81 3.6208962959782706E-4 0.0021897801409011446 0.0 0.15170693361983245 0.0 82-83 3.6208962959782706E-4 0.0022156436858724177 0.0 0.15217247742931536 0.0 84-85 3.6208962959782706E-4 0.002275991957472056 0.0 0.1526207788754841 0.0 86-87 3.6208962959782706E-4 0.0023449614107287848 0.0 0.1529225202334823 0.0 88-89 3.793319929120093E-4 0.0024829003172422426 0.0 0.152991489686739 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5970 0.0 44.1662 1 GTATCAA 10505 0.0 35.465225 1 TCAACGC 12245 0.0 29.30004 4 ATCAACG 12290 0.0 29.192759 3 CAACGCA 12580 0.0 28.552956 5 AACGCAG 13030 0.0 27.726944 6 TATCAAC 13080 0.0 27.718313 2 ACGCAGA 15240 0.0 23.6788 7 CGCAGAG 15510 0.0 23.265995 8 GTACATG 16275 0.0 22.609703 1 TACATGG 16090 0.0 22.377396 2 ACATGGG 16430 0.0 21.328989 3 CATGGGG 12315 0.0 19.682049 4 GCAGAGT 18990 0.0 18.980104 9 GAGTACT 10525 0.0 17.796478 12-13 AGAGTAC 16415 0.0 17.71339 10-11 CAGAGTA 18090 0.0 16.891916 10-11 TATACCG 390 1.10958354E-10 16.045572 5 GTACTTT 11750 0.0 15.906352 14-15 GAGTACA 11815 0.0 15.572278 1 >>END_MODULE