##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140024_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8269933 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.42629668221012 33.0 31.0 34.0 31.0 34.0 2 32.60586403783441 34.0 31.0 34.0 31.0 34.0 3 32.6999148602534 34.0 31.0 34.0 31.0 34.0 4 36.1920270696268 37.0 37.0 37.0 35.0 37.0 5 35.996232617604036 37.0 35.0 37.0 35.0 37.0 6 36.06391043313168 37.0 35.0 37.0 35.0 37.0 7 36.04661017205339 37.0 35.0 37.0 35.0 37.0 8 36.051241769431506 37.0 35.0 37.0 35.0 37.0 9 37.9300817793808 39.0 38.0 39.0 35.0 39.0 10-11 37.77321642146315 39.0 37.5 39.0 35.0 39.0 12-13 37.778017850930596 39.0 38.0 39.0 35.0 39.0 14-15 39.12859342391286 40.0 39.0 41.0 36.0 41.0 16-17 39.09354477236998 40.0 38.5 41.0 36.0 41.0 18-19 39.13122337266819 40.0 39.0 41.0 36.0 41.0 20-21 39.13471897248432 40.0 39.0 41.0 36.0 41.0 22-23 39.070942324337885 40.0 39.0 41.0 36.0 41.0 24-25 39.09380517963152 40.0 39.0 41.0 36.0 41.0 26-27 38.982431595136035 40.0 39.0 41.0 35.5 41.0 28-29 38.90332484478513 40.0 38.0 41.0 35.0 41.0 30-31 38.80382000867765 40.0 38.0 41.0 35.0 41.0 32-33 38.73135055553463 40.0 38.0 41.0 35.0 41.0 34-35 38.67785590545434 40.0 38.0 41.0 35.0 41.0 36-37 38.666862415347396 40.0 38.0 41.0 35.0 41.0 38-39 38.583841159810966 40.0 38.0 41.0 35.0 41.0 40-41 38.55241105563715 40.0 38.0 41.0 35.0 41.0 42-43 38.504182998899566 40.0 38.0 41.0 34.0 41.0 44-45 38.40379245644093 40.0 38.0 41.0 34.0 41.0 46-47 38.33306526055446 40.0 38.0 41.0 34.0 41.0 48-49 38.32815542655226 40.0 38.0 41.0 34.0 41.0 50-51 38.25932761640759 40.0 38.0 41.0 34.0 41.0 52-53 38.072841757160845 40.0 37.0 41.0 33.0 41.0 54-55 37.90395957269885 40.0 37.0 41.0 33.0 41.0 56-57 37.77214132671527 39.0 36.5 41.0 33.0 41.0 58-59 37.60156918151654 39.0 36.0 41.0 33.0 41.0 60-61 37.42226480065527 39.0 36.0 41.0 33.0 41.0 62-63 37.251741627662796 39.0 35.0 40.0 32.5 41.0 64-65 37.03184635349358 38.5 35.0 40.0 32.0 41.0 66-67 36.745485927083934 38.0 35.0 40.0 32.0 41.0 68-69 36.491605680706435 37.0 35.0 40.0 32.0 41.0 70-71 36.2020904673543 37.0 35.0 39.5 31.0 41.0 72-73 35.89930291135147 36.0 35.0 39.0 31.0 41.0 74-75 35.46939725786688 36.0 34.0 39.0 31.0 40.0 76-77 33.55705616258821 34.5 32.0 36.5 28.0 39.0 78-79 34.64356803658502 35.0 34.0 37.0 30.0 39.0 80-81 34.62931369762734 35.0 34.0 37.0 30.5 39.0 82-83 34.3975501434996 35.0 34.0 36.0 30.5 38.5 84-85 34.15162317834918 35.0 34.0 36.0 30.0 37.0 86-87 33.92969293841837 35.0 34.0 35.5 30.0 37.0 88-89 33.77981893983137 35.0 34.0 35.0 30.0 36.5 90-91 33.708816094286966 35.0 34.0 35.0 30.0 36.0 92-93 33.5950280179504 35.0 34.0 35.0 30.0 36.0 94-95 33.501664204829545 35.0 34.0 35.0 30.0 36.0 96-97 33.492834354363225 35.0 33.0 35.0 30.0 35.5 98-99 33.614734724722716 35.0 34.0 35.0 30.5 35.0 100-101 32.38360662066847 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 10.0 20 31.0 21 140.0 22 694.0 23 2224.0 24 5922.0 25 12825.0 26 23552.0 27 38278.0 28 56735.0 29 79430.0 30 106480.0 31 140209.0 32 186133.0 33 254210.0 34 379684.0 35 589581.0 36 1068251.0 37 1973168.0 38 2319528.0 39 1014367.0 40 18476.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.37104460217513 20.012810260977933 13.197349966438665 24.418795170408274 2 14.980140375367826 21.57823250670956 40.48833659711747 22.95329052080514 3 18.235081227381166 26.453503311332753 30.397307934659207 24.91410752662688 4 12.495453393413031 17.814995192205373 38.99157716945687 30.69797424492473 5 13.015595168667026 38.12761240024557 35.80168061821057 13.055111812876842 6 29.92596191529 38.173864286445855 18.885038125460024 13.01513567280412 7 26.43870803287066 32.59606764222263 23.62840406464721 17.336820260259504 8 24.756165262145846 36.42642308928961 21.531037529974874 17.286374118589677 9 26.047094462203557 16.072441708105945 21.058963967297434 36.82149986239306 10-11 24.310802020406364 26.57596889837091 29.286000996019247 19.82722808520348 12-13 25.078490788211422 24.17373591121413 29.209335109005597 21.538438191568854 14-15 22.165447591454825 25.514943899162386 26.713412326343754 25.60619618303903 16-17 21.875872704954126 28.51749636075043 27.3438251501181 22.26280578417734 18-19 21.893931909726476 27.95560737916498 28.848794784673586 21.301665926434953 20-21 22.80701202796472 27.2640437304902 28.44934229890289 21.479601942642184 22-23 22.466593196945716 27.120129040645686 28.403708558013115 22.009569204395486 24-25 22.133415253165488 27.229537688233705 28.6017614094566 22.035285649144207 26-27 22.124434764802615 27.43431145264175 28.419040602052636 22.022213180502998 28-29 22.06541391597619 27.58717809298904 28.382735398215566 21.964672592819205 30-31 22.3934229109231 27.38831450871146 28.259150906156066 21.959111674209375 32-33 22.13594512726473 27.620152730451466 28.250948292040185 21.992953850243616 34-35 22.208647537493103 27.612471683086227 28.29421445118837 21.884666328232292 36-37 22.22951067178563 27.476586759332537 28.292965394832898 22.000937174048932 38-39 22.05199893362166 27.637879193684366 28.341806422640868 21.9683154500531 40-41 22.30920133939271 27.500330867163992 28.20592498384975 21.984542809593542 42-43 22.201220476959772 27.593604833201084 28.043594561087342 22.1615801287518 44-45 22.309373447666513 27.71673629264082 27.867458967499736 22.106431292192934 46-47 22.356412698825594 27.60339690609935 27.674666929022422 22.365523466052636 48-49 22.280444659905612 27.709316880740488 27.761893633515538 22.248344825838366 50-51 22.2253431333016 27.81534291718784 27.62655964291682 22.332754306593735 52-53 22.434267561484667 27.759399321355176 27.432695705700656 22.373637411459505 54-55 22.41361289702101 27.644707495854714 27.505136979732526 22.43654262739175 56-57 22.39286168739783 27.768498442226768 27.49281673218862 22.345823138186784 58-59 22.333587145680454 27.853623288962908 27.486581833949124 22.32620773140751 60-61 22.413711226684338 27.768624479238834 27.4837770209522 22.333887273124628 62-63 22.408445885616647 27.816769217190107 27.411529492097802 22.36325540509544 64-65 22.352003995437332 27.798627788800484 27.442846597801324 22.406521617960856 66-67 22.48755911259109 27.83232052502434 27.23034245155789 22.449777910826686 68-69 22.39510055813184 27.835206579033063 27.37453376196376 22.395159100871336 70-71 22.378599747671554 27.546601937859933 27.434786355043357 22.64001195942516 72-73 22.467378298154422 27.6285095524252 27.413220142999407 22.49089200642097 74-75 22.26406808428274 27.817440046672594 27.352410785763336 22.566081083281333 76-77 22.408603917386202 27.701789767295033 27.31559876984279 22.57400754547598 78-79 22.440133594136626 27.79644879251964 27.21288228951493 22.550535323828804 80-81 22.38779009651122 27.761964596582533 27.290364613339406 22.55988069356684 82-83 22.451565818582207 27.673215482809255 27.40279307701934 22.4724256215892 84-85 22.563653670615615 27.690325879759726 27.258973479978277 22.487046969646386 86-87 22.32918657490226 27.732012905184934 27.36979454560511 22.569005974307693 88-89 22.41177821011021 27.74309901920863 27.27950626965814 22.56561650102302 90-91 22.47972732510666 27.724086824172172 27.366329982551374 22.429855868169795 92-93 22.52641390501295 27.70865335957657 27.253147777118564 22.51178495829192 94-95 22.339307427967224 27.76443739536523 27.36851704996035 22.5277381267072 96-97 22.346323249648997 27.758957742012964 27.44323616727371 22.451482841064326 98-99 22.5923681878766 28.412302414875164 27.443370675166534 21.551958722081707 100-101 26.719819852561777 35.45313204422636 28.03763298071153 9.78941512250033 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1812.0 1 1634.5 2 2257.0 3 3281.5 4 4493.0 5 7038.0 6 9070.0 7 10524.5 8 11493.5 9 11247.5 10 10118.0 11 8978.5 12 9716.5 13 12747.0 14 19314.5 15 27900.5 16 34538.0 17 38381.0 18 39320.5 19 37585.0 20 34985.5 21 33269.5 22 34152.0 23 38681.0 24 46634.0 25 59115.0 26 76571.5 27 94403.0 28 111930.5 29 131466.0 30 148606.0 31 164533.5 32 182680.5 33 201088.5 34 219373.0 35 236647.5 36 256197.5 37 272649.5 38 281373.5 39 289725.0 40 301605.5 41 314122.5 42 322523.0 43 330707.0 44 340711.0 45 349123.0 46 352825.0 47 354164.5 48 354076.5 49 350127.5 50 344614.0 51 336961.5 52 324823.0 53 311455.0 54 296541.0 55 277492.5 56 257669.5 57 235081.0 58 210873.5 59 186428.0 60 158434.5 61 130331.5 62 105182.5 63 83579.0 64 64445.0 65 48721.0 66 36990.5 67 28476.0 68 22176.0 69 16299.5 70 11626.5 71 8424.0 72 5994.0 73 4117.0 74 2781.5 75 1894.0 76 1296.5 77 854.5 78 542.0 79 347.0 80 242.5 81 174.5 82 122.5 83 81.5 84 55.0 85 41.0 86 32.0 87 28.0 88 22.0 89 14.5 90 11.0 91 8.5 92 6.0 93 3.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004727970589362695 3 0.0 4 3.506678953747267E-4 5 0.0 6 0.0 7 0.002261203325347376 8 0.0010882796753008761 9 1.2091996392231957E-5 10-11 1.5114995490289945E-4 12-13 1.632419512951314E-4 14-15 3.627598917669587E-5 16-17 3.3252990078637884E-4 18-19 0.0 20-21 9.069395934093062E-5 22-23 0.0 24-25 0.0 26-27 6.353636509907527E-4 28-29 2.422242826088839E-4 30-31 5.458987747180691E-5 32-33 0.0018431701845871068 34-35 4.88417633708143E-4 36-37 0.0013686113467823028 38-39 0.004045146306880386 40-41 1.747150288682266E-4 42-43 8.877445169498761E-4 44-45 0.0018258671166994378 46-47 1.0945786100924913E-4 48-49 3.8438866045633583E-4 50-51 2.4378626691341353E-4 52-53 0.0 54-55 2.1536536296365888E-4 56-57 0.0016339654578340578 58-59 0.0031831754159090835 60-61 0.0012203216042529115 62-63 0.0010653692209893258 64-65 7.136748086495103E-6 66-67 6.501541009697987E-5 68-69 2.927136117830108E-5 70-71 7.415317628827611E-6 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 3.212906631487481E-5 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 239.0 20-21 702.0 22-23 1397.0 24-25 3570.0 26-27 5086.0 28-29 10358.0 30-31 22678.0 32-33 27766.0 34-35 37676.0 36-37 58638.0 38-39 71539.0 40-41 70319.0 42-43 78330.0 44-45 92288.0 46-47 92623.0 48-49 87609.0 50-51 81155.0 52-53 78102.0 54-55 84035.0 56-57 87331.0 58-59 86607.0 60-61 84950.0 62-63 80716.0 64-65 82972.0 66-67 88317.0 68-69 89583.0 70-71 88669.0 72-73 84052.0 74-75 84717.0 76-77 83519.0 78-79 87988.0 80-81 89962.0 82-83 85105.0 84-85 83857.0 86-87 87181.0 88-89 92294.0 90-91 97384.0 92-93 100293.0 94-95 108214.0 96-97 158227.0 98-99 661728.0 100-101 4772157.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.74649321049573 #Duplication Level Percentage of deduplicated Percentage of total 1 90.13140589954352 77.28451984017643 2 6.905984038926462 11.843278270111991 3 1.662890035362952 4.277609673811511 4 0.5989277339829487 2.05423811502186 5 0.2891668296037915 1.239752079566104 6 0.14637727326578404 0.7530802720953257 7 0.08483022124893519 0.509172579325667 8 0.05205404218489475 0.3570761259828748 9 0.03242519693956736 0.25023122363048395 >10 0.0940551829128461 1.1934670353212278 >50 0.0014344726540518856 0.07925479319385804 >100 3.406854857997984E-4 0.06058559021429493 >500 6.503280070852739E-5 0.03827224156793752 >1k 4.33550876885606E-5 0.05946215998036672 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.2091996392231957E-5 3.627598917669587E-5 2 0.0 0.0 0.0 6.045998196115978E-5 3.627598917669587E-5 3 0.0 0.0 0.0 6.045998196115978E-5 3.627598917669587E-5 4 0.0 1.2091996392231957E-5 0.0 6.045998196115978E-5 4.8367985568927827E-5 5 0.0 1.2091996392231957E-5 0.0 6.045998196115978E-5 6.045998196115978E-5 6 0.0 2.4183992784463913E-5 0.0 6.045998196115978E-5 6.045998196115978E-5 7 0.0 2.4183992784463913E-5 0.0 1.088279675300876E-4 6.045998196115978E-5 8 0.0 2.4183992784463913E-5 0.0 1.2091996392231957E-4 7.255197835339174E-5 9 0.0 4.8367985568927827E-5 0.0 1.6928794949124738E-4 8.464397474562369E-5 10-11 0.0 4.8367985568927827E-5 0.0 2.4183992784463913E-4 8.464397474562369E-5 12-13 0.0 4.8367985568927827E-5 0.0 2.6602392062910306E-4 8.464397474562369E-5 14-15 0.0 6.650598015727576E-5 0.0 3.022999098057989E-4 1.088279675300876E-4 16-17 0.0 7.255197835339174E-5 0.0 3.1439190619803086E-4 1.2091996392231957E-4 18-19 0.0 9.068997294173968E-5 0.0 3.325299007863788E-4 1.3301196031455153E-4 20-21 0.0 9.673597113785565E-5 0.0 3.627598917669587E-4 1.390579585106675E-4 22-23 0.0 1.5114995490289945E-4 0.0 4.171738755320025E-4 1.7533394768736338E-4 24-25 0.0 1.9951794047182728E-4 0.0 4.957718520815103E-4 2.176559350601752E-4 26-27 0.0 2.176559350601752E-4 0.0 6.227378141999457E-4 2.176559350601752E-4 28-29 0.0 2.2370193325629118E-4 0.0 0.0013180276067532833 2.2974793145240718E-4 30-31 0.0 2.78115917021335E-4 0.0 0.003573184933904543 2.3579392964852316E-4 32-33 0.0 2.9020791341356696E-4 0.0 0.007714693698243989 2.539319242368711E-4 34-35 0.0 3.325299007863788E-4 0.0 0.01306540210180663 2.539319242368711E-4 36-37 0.0 3.5066789537472676E-4 0.0 0.020048530018320583 2.7206991882521903E-4 38-39 0.0 3.5066789537472676E-4 0.0 0.031983330457453524 2.9625391160968293E-4 40-41 0.0 3.7485188815919066E-4 0.0 0.043192611113052545 3.1439190619803086E-4 42-43 0.0 3.9903588094365456E-4 0.0 0.05247926434228669 3.2043790439414683E-4 44-45 0.0 4.715878592970463E-4 0.0 0.06318068114941197 3.264839025902628E-4 46-47 0.0 5.320478412582061E-4 0.0 0.07417835186814693 3.264839025902628E-4 48-49 0.0 5.380938394543221E-4 0.0 0.08480721669691882 3.3857589898249476E-4 50-51 0.0 7.194737853378015E-4 0.0 0.0952063335942383 3.3857589898249476E-4 52-53 0.0 7.376117799261494E-4 0.0 0.10520036861241802 3.6880588996307463E-4 54-55 0.0 7.376117799261494E-4 0.0 0.11477118375686962 3.9903588094365456E-4 56-57 0.0 7.617957727106133E-4 0.0 0.12442664287606683 3.9903588094365456E-4 58-59 0.0 7.920257636911932E-4 0.0 0.13325380024239616 3.9903588094365456E-4 60-61 0.0 8.04117760083425E-4 0.0 0.14160332375123233 3.9903588094365456E-4 62-63 0.0 8.22255754671773E-4 0.0 0.15020677918430536 3.9903588094365456E-4 64-65 0.0 8.948077330251647E-4 0.0 0.15774009293666585 3.9903588094365456E-4 66-67 0.0 9.129457276135127E-4 0.0 0.16573290255193118 3.9903588094365456E-4 68-69 0.0 9.250377240057448E-4 0.0 0.17431821999041588 3.9903588094365456E-4 70-71 0.0 9.371297203979766E-4 0.0 0.18201477569407154 4.0508187913977054E-4 72-73 0.0 9.431757185940926E-4 0.0 0.18748640406155648 4.353118701203504E-4 74-75 0.0 9.854977059669044E-4 0.0 0.19220832865272308 4.353118701203504E-4 76-77 0.0 0.0010459576879280643 0.0 0.19616845747117903 4.4740386651258236E-4 78-79 0.0 0.0010520036861241802 0.0 0.19977791839426026 4.4740386651258236E-4 80-81 0.0 0.0010640956825164122 0.0 0.20160380984948728 4.6554186110093034E-4 82-83 0.0 0.0010701416807125282 0.0 0.20226886965106006 4.8367985568927827E-4 84-85 0.0 0.001094325673496992 0.0 0.20273441151216098 4.8367985568927827E-4 86-87 0.0 0.0011124636680853398 0.0 0.20295811344541725 4.8367985568927827E-4 88-89 0.0 0.001136647660869804 0.0 0.20304880341835901 4.897258538853942E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8675 0.0 47.368324 1 GTATCAA 15035 0.0 35.116077 1 TCAACGC 18400 0.0 27.835981 4 ATCAACG 18390 0.0 27.805977 3 CAACGCA 18745 0.0 27.301355 5 TATCAAC 19200 0.0 27.087866 2 AACGCAG 19540 0.0 26.296944 6 TACATGG 24060 0.0 22.875618 2 ACGCAGA 22450 0.0 22.74039 7 GTACATG 24870 0.0 22.430855 1 CGCAGAG 22905 0.0 22.252151 8 ACATGGG 24485 0.0 22.020046 3 CATGGGG 18180 0.0 20.182158 4 GCAGAGT 27670 0.0 18.435036 9 GAGTACT 14820 0.0 17.77005 12-13 AGAGTAC 24210 0.0 17.469614 10-11 CAGAGTA 26965 0.0 16.723734 10-11 TATACCG 630 0.0 16.47047 5 ATGGGGG 12085 0.0 16.038982 5 GAGTACA 17205 0.0 15.657137 1 >>END_MODULE