##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140023_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7536362 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.41798337181786 33.0 31.0 34.0 31.0 34.0 2 32.59875109502436 34.0 31.0 34.0 31.0 34.0 3 32.694919909632794 34.0 31.0 34.0 31.0 34.0 4 36.185844443247284 37.0 35.0 37.0 35.0 37.0 5 35.991604171880276 37.0 35.0 37.0 35.0 37.0 6 36.05722641773312 37.0 35.0 37.0 35.0 37.0 7 36.03719898274525 37.0 35.0 37.0 35.0 37.0 8 36.0385461844853 37.0 35.0 37.0 35.0 37.0 9 37.91656717126911 39.0 38.0 39.0 35.0 39.0 10-11 37.76010600340058 39.0 37.5 39.0 35.0 39.0 12-13 37.76894667480145 39.0 38.0 39.0 35.0 39.0 14-15 39.120762312107615 40.0 38.5 41.0 36.0 41.0 16-17 39.07863827401072 40.0 38.0 41.0 36.0 41.0 18-19 39.11330108612086 40.0 38.5 41.0 36.0 41.0 20-21 39.12081259574944 40.0 39.0 41.0 36.0 41.0 22-23 39.056588084435475 40.0 39.0 41.0 36.0 41.0 24-25 39.08003063293106 40.0 39.0 41.0 36.0 41.0 26-27 38.97337761391727 40.0 39.0 41.0 35.5 41.0 28-29 38.8943099392737 40.0 38.0 41.0 35.0 41.0 30-31 38.79978362961002 40.0 38.0 41.0 35.0 41.0 32-33 38.72850340182699 40.0 38.0 41.0 35.0 41.0 34-35 38.67717477860582 40.0 38.0 41.0 35.0 41.0 36-37 38.66483575392843 40.0 38.0 41.0 35.0 41.0 38-39 38.58364039985716 40.0 38.0 41.0 35.0 41.0 40-41 38.557721413987736 40.0 38.0 41.0 35.0 41.0 42-43 38.5144312692192 40.0 38.0 41.0 34.0 41.0 44-45 38.41890562780904 40.0 38.0 41.0 34.0 41.0 46-47 38.354016236714344 40.0 38.0 41.0 34.0 41.0 48-49 38.35732147500968 40.0 38.0 41.0 34.0 41.0 50-51 38.28914411742957 40.0 38.0 41.0 34.0 41.0 52-53 38.10973857603673 40.0 37.0 41.0 33.5 41.0 54-55 37.9446372095593 40.0 37.0 41.0 33.0 41.0 56-57 37.816721057772185 39.5 37.0 41.0 33.0 41.0 58-59 37.6574873424625 39.0 36.0 41.0 33.0 41.0 60-61 37.47367645727191 39.0 36.0 41.0 33.0 41.0 62-63 37.31621058178367 39.0 35.5 40.5 32.5 41.0 64-65 37.11309941488519 39.0 35.0 40.0 32.0 41.0 66-67 36.83019565490321 38.0 35.0 40.0 32.0 41.0 68-69 36.58770137732296 37.5 35.0 40.0 32.0 41.0 70-71 36.296914184733154 37.0 35.0 39.5 31.0 41.0 72-73 35.99375330425327 36.5 35.0 39.0 31.0 41.0 74-75 35.56010529588549 36.0 34.0 39.0 31.0 40.0 76-77 33.62827231635217 34.5 32.0 36.5 28.0 39.0 78-79 34.71662448495553 35.0 34.0 37.0 30.0 39.0 80-81 34.69153469420104 35.0 34.0 37.0 30.5 39.0 82-83 34.44514619723867 35.0 34.0 36.5 30.5 39.0 84-85 34.182384357147725 35.0 34.0 36.0 30.0 37.0 86-87 33.949287790782634 35.0 34.0 36.0 30.0 37.0 88-89 33.788932907641204 35.0 34.0 35.0 30.0 37.0 90-91 33.71231217258971 35.0 34.0 35.0 30.0 36.0 92-93 33.59713522794532 35.0 34.0 35.0 30.0 36.0 94-95 33.50136249204134 35.0 34.0 35.0 30.0 36.0 96-97 33.48831264668224 35.0 33.0 35.0 30.0 35.5 98-99 33.61368538912329 35.0 34.0 35.0 30.5 35.0 100-101 32.395801995003765 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 12.0 20 35.0 21 152.0 22 576.0 23 2016.0 24 5477.0 25 11783.0 26 21456.0 27 35034.0 28 52283.0 29 72186.0 30 96839.0 31 126720.0 32 168390.0 33 229863.0 34 336177.0 35 521820.0 36 943881.0 37 1762788.0 38 2162846.0 39 967934.0 40 18092.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.89999100361687 20.394707685220006 13.259859332659445 24.445441978503688 2 14.818489503370339 21.791477166118323 40.63687046164045 22.753162868870884 3 17.979154660982932 26.621150446482062 30.75983223202816 24.639862660506843 4 12.24172286442226 18.162533423085208 39.40426995463178 30.191473757860756 5 12.81467105746778 38.16308186894419 36.24772801518823 12.774519058399795 6 29.536147547052543 38.71282987733339 18.97414163491616 12.776880940697913 7 26.025662256488815 32.69171057471374 23.883642215630044 17.398984953167403 8 24.346199752265207 36.75547036769443 21.79516830905413 17.103161570986238 9 25.49838409968956 16.279114203203775 21.305575267410404 36.91692642969626 10-11 23.796423814011895 26.78158785821206 29.74569397160669 19.676294356169358 12-13 24.59867851183172 24.3035489849731 29.64687689746976 21.450895605725425 14-15 21.7641762540186 25.807765458172355 26.87635140644461 25.55170688136443 16-17 21.630871406558068 28.991778892997427 27.51037540405924 21.86697429638526 18-19 21.647712782374306 28.286466334817778 28.907793972741757 21.15802691006616 20-21 22.31858199462473 27.59797181367183 28.658860397181847 21.424585794521597 22-23 22.01796242010994 27.59981741499688 28.5699080724721 21.81231209242108 24-25 21.832049881681474 27.683774362688485 28.707818845914986 21.776356909715062 26-27 21.801068396641423 27.86603541180416 28.580506575387037 21.752389616167385 28-29 21.6956849129951 27.87472825817887 28.575839268795615 21.853747560030413 30-31 21.953745092849076 27.69586395947629 28.587998777173407 21.762392170501226 32-33 21.721122899265307 27.921154340081443 28.530243353786783 21.827479406866466 34-35 21.818389054439166 28.02560928145369 28.573142101810234 21.58285956229691 36-37 21.852974754426466 27.879825354647647 28.449976308611234 21.817223582314647 38-39 21.722577435728386 27.94474308489603 28.547429706619752 21.785249772755833 40-41 21.955557336228267 27.79191567880494 28.479293459558637 21.773233525408155 42-43 21.888124629796494 27.853099092896226 28.3727985075583 21.885977769748983 44-45 21.886670409504756 28.036592075917078 28.17443538914082 21.902302125437345 46-47 22.050109481656428 27.872725031984857 27.916904638171225 22.16026084818749 48-49 21.92413438412536 27.96484241347428 28.043407934594004 22.067615267806357 50-51 21.856731220361283 28.093292310997107 27.994790806768176 22.05518566187343 52-53 22.02902750485754 27.994129499485176 27.932350588168838 22.04449240748845 54-55 21.993594865215467 27.935041725166126 27.888012311430067 22.183351098188343 56-57 22.08340803609137 28.03680401722052 27.759262329330763 22.120525617357345 58-59 21.93100180675024 28.124886342539952 27.92212333205898 22.021988518650833 60-61 22.085111447449087 28.13547388211574 27.794781758836447 21.984632911598727 62-63 21.975584655930398 28.249578692108653 27.73902678519366 22.03580986676729 64-65 21.930416663349362 28.202607962149134 27.7418794912217 22.12509588327981 66-67 22.039328381727515 28.22264295316686 27.561941418143487 22.17608724696214 68-69 21.99664468138409 28.195452413816795 27.64197716516574 22.16592573963337 70-71 22.01239830357336 27.92919019836908 27.68341912757431 22.374992370483255 72-73 22.056445355298628 27.949623984030893 27.665189266810486 22.328741393859993 74-75 21.948952217720425 28.05997593573754 27.616292678112863 22.37477916842917 76-77 22.06311302177765 27.986814623094787 27.562205281381573 22.38786707374599 78-79 22.072594864942044 28.028450818831317 27.481185732068745 22.417768584157894 80-81 22.066842122932936 28.061094005502035 27.484744251662853 22.387319619902176 82-83 22.09182496168714 28.004211293671037 27.56067554742716 22.343288197214655 84-85 22.193927304183 27.99761042364527 27.48821148058162 22.320250791590116 86-87 22.0744635728234 27.987499682457234 27.565115067869776 22.372921676849586 88-89 22.11743890853718 27.960188092327158 27.569893161860026 22.35247983727563 90-91 22.142351112636653 27.95868328125349 27.608747975811536 22.290217630298322 92-93 22.107039075458857 27.894332216123637 27.628840542654242 22.369788165763264 94-95 21.998287939832363 27.94806443828427 27.72264742857361 22.33100019330976 96-97 22.021757864606283 27.971144896214756 27.760098311017128 22.246998928161833 98-99 22.23089221336286 28.599420820022388 27.7995124407709 21.37017452584385 100-101 26.263660472142497 35.62662228464759 28.44213863825092 9.667578604958994 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1325.0 1 1239.5 2 1762.5 3 2534.5 4 3414.0 5 5396.5 6 7076.0 7 8195.0 8 8937.5 9 8878.5 10 8126.0 11 7355.0 12 7921.0 13 10227.0 14 15455.5 15 22357.5 16 27869.5 17 31255.0 18 32535.5 19 32151.0 20 31327.5 21 31197.0 22 33088.0 23 38285.0 24 47428.0 25 60549.5 26 77057.5 27 94905.0 28 114472.5 29 135435.0 30 153181.5 31 169288.0 32 185281.5 33 200450.5 34 215904.5 35 230659.5 36 246827.5 37 261860.5 38 272323.0 39 280312.0 40 290151.5 41 300180.5 42 306320.0 43 311259.5 44 316575.0 45 322597.5 46 329366.5 47 334672.5 48 332450.5 49 325380.5 50 318009.0 51 306031.0 52 289478.5 53 272782.5 54 254841.5 55 234709.0 56 214942.0 57 193640.5 58 171280.5 59 148928.0 60 125771.5 61 103032.5 62 82261.0 63 64405.5 64 49157.5 65 37436.0 66 28672.0 67 21900.0 68 16634.0 69 12128.0 70 8673.0 71 6299.0 72 4550.0 73 3186.5 74 2218.0 75 1539.5 76 1082.0 77 750.0 78 512.0 79 350.5 80 233.0 81 159.5 82 120.0 83 86.0 84 62.5 85 47.0 86 38.5 87 34.5 88 27.5 89 18.5 90 10.0 91 4.0 92 2.0 93 2.0 94 2.0 95 2.0 96 2.0 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004299156542639539 3 1.3269001674813392E-5 4 3.8480104856958834E-4 5 0.0 6 0.0 7 0.002096502264620516 8 0.001021713128960631 9 7.961401004888035E-5 10-11 1.1942101507332052E-4 12-13 1.3269001674813392E-4 14-15 6.634500837406696E-6 16-17 3.8480104856958834E-4 18-19 0.0 20-21 7.29830197042874E-5 22-23 0.0 24-25 0.0 26-27 6.640084196267609E-4 28-29 2.0600933208983444E-4 30-31 1.9972120251603445E-5 32-33 0.0018832079820237779 34-35 4.559176875479426E-4 36-37 0.0013688020743217722 38-39 0.004018429291860967 40-41 8.232555420877046E-5 42-43 8.448861706330725E-4 44-45 0.0018340503630229687 46-47 8.504248049072345E-5 48-49 2.582261897879289E-4 50-51 2.467430104055156E-4 52-53 0.0 54-55 1.853591619215339E-4 56-57 0.0017403251797598383 58-59 0.003226913521754712 60-61 0.0013223719970815557 62-63 9.809077211061369E-4 64-65 7.88270658721529E-6 66-67 8.789635964441607E-5 68-69 8.102285192822638E-6 70-71 3.285928070541646E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 240.0 20-21 735.0 22-23 1349.0 24-25 3082.0 26-27 4912.0 28-29 10466.0 30-31 22022.0 32-33 27892.0 34-35 37118.0 36-37 57794.0 38-39 66125.0 40-41 67139.0 42-43 73881.0 44-45 86224.0 46-47 85871.0 48-49 82487.0 50-51 76233.0 52-53 70211.0 54-55 77153.0 56-57 80220.0 58-59 80366.0 60-61 83310.0 62-63 78452.0 64-65 83271.0 66-67 87534.0 68-69 84830.0 70-71 82437.0 72-73 77790.0 74-75 78269.0 76-77 77443.0 78-79 81835.0 80-81 82202.0 82-83 78335.0 84-85 77193.0 86-87 80672.0 88-89 84651.0 90-91 88473.0 92-93 91499.0 94-95 98982.0 96-97 144978.0 98-99 599026.0 100-101 4283660.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.90872843789805 #Duplication Level Percentage of deduplicated Percentage of total 1 91.21021659174919 80.18174161125943 2 6.436440081253234 11.316385264193862 3 1.3977971457372051 3.686357090876429 4 0.4662764734348731 1.639590875206682 5 0.20707761452967458 0.9101964890628447 6 0.10360491722412332 0.5464665919851819 7 0.0576490417344821 0.3547497768179147 8 0.03459811586944097 0.24331810979436938 9 0.02114572543733117 0.16730044515834291 >10 0.06410204659498632 0.8436324847674845 >50 8.44505498199844E-4 0.045329260868600396 >100 2.0494192129577376E-4 0.040006058085794424 >500 4.2799015892155845E-5 0.02492594192304912 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.653800334962678E-5 0.0 1.326900167481339E-5 0.0 3 0.0 2.653800334962678E-5 0.0 1.326900167481339E-5 0.0 4 0.0 9.288301172369374E-5 0.0 3.9807005024440174E-5 0.0 5 0.0 9.288301172369374E-5 0.0 3.9807005024440174E-5 0.0 6 3.9807005024440174E-5 9.288301172369374E-5 0.0 3.9807005024440174E-5 1.326900167481339E-5 7 3.9807005024440174E-5 9.288301172369374E-5 0.0 3.9807005024440174E-5 1.326900167481339E-5 8 3.9807005024440174E-5 1.1942101507332053E-4 0.0 3.9807005024440174E-5 1.326900167481339E-5 9 3.9807005024440174E-5 2.2557302847182764E-4 0.0 1.0615201339850713E-4 2.653800334962678E-5 10-11 3.9807005024440174E-5 2.2557302847182764E-4 0.0 1.3269001674813392E-4 2.653800334962678E-5 12-13 3.9807005024440174E-5 2.2557302847182764E-4 0.0 1.592280200977607E-4 2.653800334962678E-5 14-15 3.9807005024440174E-5 3.118215393581147E-4 0.0 1.658625209351674E-4 4.644150586184687E-5 16-17 9.288301172369374E-5 3.184560401955214E-4 0.0 2.0566952595960756E-4 6.634500837406696E-5 18-19 9.288301172369374E-5 3.5162854438255486E-4 0.0 2.3884203014664106E-4 6.634500837406696E-5 20-21 9.288301172369374E-5 3.8480104856958834E-4 0.0 2.919180368458946E-4 6.634500837406696E-5 22-23 9.288301172369374E-5 4.511460569436553E-4 0.0 3.5162854438255486E-4 6.634500837406696E-5 24-25 9.951751256110043E-5 5.042220636429089E-4 0.0 4.57780557781062E-4 6.634500837406696E-5 26-27 1.0615201339850713E-4 5.307600669925357E-4 0.0 5.772015728543825E-4 6.634500837406696E-5 28-29 1.0615201339850713E-4 5.307600669925357E-4 0.0 0.0016055492026524204 6.634500837406696E-5 30-31 1.0615201339850713E-4 5.971050753666026E-4 0.0 0.0051351036481527826 6.634500837406696E-5 32-33 1.0615201339850713E-4 5.971050753666026E-4 0.0 0.011139326906005841 6.634500837406696E-5 34-35 1.0615201339850713E-4 7.165260904399231E-4 0.0 0.018364298317941737 7.961401004888035E-5 36-37 1.0615201339850713E-4 8.226781038384302E-4 0.0 0.028979499657792444 9.288301172369374E-5 38-39 1.0615201339850713E-4 8.425816063506503E-4 0.0 0.0476556195150923 9.951751256110043E-5 40-41 1.0615201339850713E-4 9.15561115562124E-4 0.0 0.08931365027316893 1.0615201339850713E-4 42-43 1.0615201339850713E-4 9.553681205865641E-4 0.0 0.10676238747554855 1.1278651423591383E-4 44-45 1.1278651423591383E-4 0.0011344996431965448 0.0 0.1302816929441553 1.2605551591072722E-4 46-47 1.1942101507332053E-4 0.0012738241607820856 0.0 0.15553923763216257 1.3269001674813392E-4 48-49 1.1942101507332053E-4 0.0012738241607820856 0.0 0.17685588882275027 1.459590184229473E-4 50-51 1.3269001674813392E-4 0.0014529556833920664 0.0 0.20020269726958445 1.459590184229473E-4 52-53 1.3269001674813392E-4 0.0014728591859042865 0.0 0.23180945925898994 1.52593519260354E-4 54-55 1.3269001674813392E-4 0.0014728591859042865 0.0 0.2949898107336139 1.592280200977607E-4 56-57 1.3269001674813392E-4 0.0014993971892539133 0.0 0.3590658198212878 1.592280200977607E-4 58-59 1.3269001674813392E-4 0.0015193006917661334 0.0 0.4268040733712101 1.592280200977607E-4 60-61 1.52593519260354E-4 0.00154583869511576 0.0 0.4731128892163089 1.592280200977607E-4 62-63 1.9903502512220086E-4 0.0015657421976279801 0.0 0.49397839434995294 1.592280200977607E-4 64-65 1.9903502512220086E-4 0.0017117012160509275 0.0 0.5130724877600095 1.592280200977607E-4 66-67 2.1230402679701425E-4 0.0017316047185631477 0.0 0.5223939614365658 1.592280200977607E-4 68-69 2.1230402679701425E-4 0.0017846807252624012 0.0 0.5305875699707632 1.592280200977607E-4 70-71 2.1230402679701425E-4 0.001831122231124248 0.0 0.5380978249187074 1.7249702177257409E-4 72-73 2.6538003349626784E-4 0.0018443912327990614 0.0 0.5440357031681864 1.7249702177257409E-4 74-75 2.6538003349626784E-4 0.001877563736986095 0.0 0.5490646548029408 1.7249702177257409E-4 76-77 2.786490351710812E-4 0.0019505432461975685 0.0 0.5532576593321819 1.7249702177257409E-4 78-79 2.786490351710812E-4 0.0019770812495471953 0.0 0.5571720148262518 1.7249702177257409E-4 80-81 2.786490351710812E-4 0.0019770812495471953 0.0 0.5589036195448148 1.7249702177257409E-4 82-83 2.786490351710812E-4 0.001983715750384602 0.0 0.5595206281226937 1.7249702177257409E-4 84-85 2.786490351710812E-4 0.0020036192528968223 0.0 0.5600911951947107 1.7249702177257409E-4 86-87 2.786490351710812E-4 0.0020965022646205157 0.0 0.5603831132315565 1.7249702177257409E-4 88-89 2.919180368458946E-4 0.0022358267822060567 0.0 0.5604958997457925 1.7249702177257409E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6865 0.0 43.573975 1 GTATCAA 12065 0.0 34.690556 1 TCAACGC 13745 0.0 29.396614 4 ATCAACG 13805 0.0 29.35863 3 CAACGCA 14110 0.0 28.665455 5 AACGCAG 14580 0.0 27.826408 6 TATCAAC 15040 0.0 27.52674 2 ACGCAGA 17150 0.0 23.560143 7 CGCAGAG 17365 0.0 23.292076 8 GTACATG 19015 0.0 21.598278 1 TACATGG 18800 0.0 21.230206 2 ACATGGG 18795 0.0 20.838633 3 GCAGAGT 21920 0.0 18.414019 9 CATGGGG 13720 0.0 18.398832 4 AGAGTAC 18900 0.0 17.323412 10-11 GAGTACT 11930 0.0 17.124712 12-13 CAGAGTA 20845 0.0 16.588974 10-11 GAGTACA 13990 0.0 14.9438305 1 GTACTTT 14220 0.0 14.469294 14-15 ATGGGGG 8830 0.0 14.223814 5 >>END_MODULE