##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140020_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12685143 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.395393965996284 33.0 31.0 34.0 31.0 34.0 2 32.58897743604467 34.0 31.0 34.0 31.0 34.0 3 32.68409106621817 34.0 31.0 34.0 31.0 34.0 4 36.182543862532725 37.0 35.0 37.0 35.0 37.0 5 35.97371531404888 37.0 35.0 37.0 35.0 37.0 6 36.03820351098919 37.0 35.0 37.0 35.0 37.0 7 36.021863135480615 37.0 35.0 37.0 35.0 37.0 8 36.02693852170212 37.0 35.0 37.0 35.0 37.0 9 37.909464875563486 39.0 38.0 39.0 35.0 39.0 10-11 37.75599108342728 39.0 37.5 39.0 35.0 39.0 12-13 37.760767419019245 39.0 37.5 39.0 35.0 39.0 14-15 39.10171426526291 40.0 38.5 41.0 36.0 41.0 16-17 39.06509733473245 40.0 38.0 41.0 36.0 41.0 18-19 39.098106343775555 40.0 38.5 41.0 36.0 41.0 20-21 39.1041300857611 40.0 39.0 41.0 36.0 41.0 22-23 39.04272373285339 40.0 39.0 41.0 36.0 41.0 24-25 39.060656994677814 40.0 39.0 41.0 36.0 41.0 26-27 38.945794458795774 40.0 38.5 41.0 35.0 41.0 28-29 38.86559844497253 40.0 38.0 41.0 35.0 41.0 30-31 38.7650575776578 40.0 38.0 41.0 35.0 41.0 32-33 38.686704529337185 40.0 38.0 41.0 35.0 41.0 34-35 38.63654031280852 40.0 38.0 41.0 35.0 41.0 36-37 38.61794097588938 40.0 38.0 41.0 35.0 41.0 38-39 38.53389652897202 40.0 38.0 41.0 34.5 41.0 40-41 38.49771551591225 40.0 38.0 41.0 34.0 41.0 42-43 38.44282891737944 40.0 38.0 41.0 34.0 41.0 44-45 38.33994580184455 40.0 38.0 41.0 34.0 41.0 46-47 38.26048064421669 40.0 38.0 41.0 34.0 41.0 48-49 38.253623017421724 40.0 38.0 41.0 34.0 41.0 50-51 38.17159046525411 40.0 37.0 41.0 34.0 41.0 52-53 37.97445870793962 40.0 37.0 41.0 33.0 41.0 54-55 37.79115673234497 39.5 36.5 41.0 33.0 41.0 56-57 37.6457775871249 39.0 36.0 41.0 33.0 41.0 58-59 37.46255882115925 39.0 36.0 41.0 33.0 41.0 60-61 37.260688493954774 39.0 35.0 40.0 32.0 41.0 62-63 37.0746070812775 39.0 35.0 40.0 32.0 41.0 64-65 36.840684831866184 38.0 35.0 40.0 32.0 41.0 66-67 36.53666300691465 37.5 35.0 40.0 31.5 41.0 68-69 36.27745500720519 37.0 35.0 40.0 31.0 41.0 70-71 35.98343391357686 36.5 35.0 39.0 31.0 41.0 72-73 35.68297355451929 36.0 34.0 39.0 31.0 40.5 74-75 35.25553362070991 35.5 34.0 38.5 30.5 40.0 76-77 33.36869020903606 34.5 32.0 36.0 27.5 39.0 78-79 34.44355958521808 35.0 34.0 37.0 30.0 39.0 80-81 34.44285248013237 35.0 34.0 36.5 30.0 39.0 82-83 34.23212002512996 35.0 34.0 36.0 30.0 37.5 84-85 33.99976024212158 35.0 34.0 36.0 30.0 37.0 86-87 33.79513695058477 35.0 34.0 35.0 30.0 37.0 88-89 33.66391163444918 35.0 34.0 35.0 30.0 36.0 90-91 33.60796537118298 35.0 34.0 35.0 30.0 36.0 92-93 33.50418465535242 35.0 33.5 35.0 30.0 36.0 94-95 33.421363257904744 35.0 33.0 35.0 30.0 36.0 96-97 33.418321053096214 35.0 33.0 35.0 30.0 35.0 98-99 33.550766854628165 35.0 33.0 35.0 30.0 35.0 100-101 32.31814122529893 34.0 31.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 9.0 19 13.0 20 51.0 21 244.0 22 1132.0 23 3687.0 24 9646.0 25 20711.0 26 38550.0 27 62234.0 28 92437.0 29 129220.0 30 171188.0 31 224730.0 32 298117.0 33 410798.0 34 610864.0 35 954018.0 36 1723180.0 37 3111383.0 38 3422244.0 39 1380971.0 40 19715.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.894337099707904 19.752903061479085 13.193576138637145 24.159183700175866 2 15.26320602622876 21.16871311950365 40.25218868623641 23.315892168031187 3 18.629207087978532 26.15453987894497 29.925495501035073 25.29075753204143 4 12.877961210863328 17.403349978060874 38.22944056088491 31.489248250190894 5 13.36710985441788 37.928858980935416 35.32846259596758 13.375568568679123 6 30.780023528311823 37.3777260532262 18.448440037294024 13.393810381167953 7 27.075019637534165 32.25094860878595 23.090381849526192 17.5836499041537 8 25.283340179993452 36.19940753725439 20.939293971777886 17.577958310974278 9 26.080585150768133 16.192449102457747 20.807486491478492 36.91947925529562 10-11 24.82772144539372 26.28686749243701 28.660675397365026 20.22473566480425 12-13 25.520124990500687 23.838324323830022 28.850072730861754 21.791477954807537 14-15 22.55845244447815 25.186389335364893 26.21186473213029 26.04329348802666 16-17 22.31198547397785 28.365455147879437 26.798186880242227 22.524372497900487 18-19 22.365069120624025 27.65122947372371 28.376909113283155 21.60679229236911 20-21 23.078328179879207 26.874336618344174 28.173552604551627 21.87378259722499 22-23 22.928659819500037 26.704068128427544 28.100587356171854 22.266684695900572 24-25 22.607340453412725 26.878268157689117 28.145225548969254 22.369165839928897 26-27 22.554149448488964 27.059690046563993 28.06810379210961 22.318056712837432 28-29 22.48190903893761 27.15968732653064 28.034705362013103 22.323698272518648 30-31 22.753129135668804 27.007815412817127 27.901968318280083 22.337087133233986 32-33 22.5109935936293 27.221192278079524 27.90864891781019 22.359165210480985 34-35 22.611424091097547 27.192473840118588 27.954030015556146 22.242072053227716 36-37 22.609486762455084 27.138717874981598 27.928923915781255 22.32287144678206 38-39 22.491023128254586 27.25288890441149 27.968171175072655 22.28791679226127 40-41 22.697584380371165 27.05887967321378 27.854787229433153 22.3887487169819 42-43 22.57185984069145 27.1877093924953 27.675935261335997 22.564495505477254 44-45 22.62911020871379 27.292191884454358 27.54327617617299 22.535421730658854 46-47 22.77200898501229 27.244153780901716 27.32012276735928 22.663714466726713 48-49 22.66681909583748 27.417451368415474 27.253945187307888 22.66178434843916 50-51 22.613994635708163 27.50086003638639 27.19235444608549 22.692790881819967 52-53 22.805824855306806 27.33258789157379 27.091562686505018 22.77002456661439 54-55 22.776925315304858 27.22390501951199 27.16515061550595 22.834019049677202 56-57 22.727979691775154 27.37269096604273 27.158733424868892 22.74059591731322 58-59 22.73794086384487 27.473351869851186 27.074452733066927 22.714254533237018 60-61 22.796860027157027 27.42148379135522 27.105289536148536 22.676366645339215 62-63 22.77877168159998 27.448508736189925 27.033989860071856 22.73872972213824 64-65 22.779286816818626 27.474494407542515 26.97561846136731 22.770600314271544 66-67 22.833666695331203 27.416751011362688 26.886900960024413 22.862681333281692 68-69 22.71922321470105 27.439705249927137 27.011321790031396 22.82974974534042 70-71 22.74785552798912 27.218439668786793 27.037184115714357 22.996520687509726 72-73 22.807831310083788 27.319906632954954 26.989008194901686 22.88325386205957 74-75 22.62898424520522 27.506338828010513 27.001005927043714 22.863670999740553 76-77 22.84662793041997 27.34557142612795 26.917988009712268 22.88981263373981 78-79 22.78791366941349 27.37815776718308 26.889827910534663 22.944100652868762 80-81 22.787996626154385 27.415381866122278 26.91329153315614 22.8833299745672 82-83 22.762847884522373 27.375573297095297 27.003154835923894 22.858423982458437 84-85 22.86148273234754 27.37715823653527 26.93529006475202 22.82606896636517 86-87 22.722315000795877 27.382203300953407 27.053193975597665 22.842287722653047 88-89 22.754149379833276 27.35149877763176 26.96037764938221 22.93397419315275 90-91 22.845224334685778 27.352156474531153 27.00312722839136 22.799491962391713 92-93 22.838664830056977 27.360707209844172 26.95542396775647 22.845203992342388 94-95 22.708621920350097 27.382326200062973 27.04115032683294 22.86790155275399 96-97 22.718974821547466 27.404731765388956 27.04947997566102 22.82681343740256 98-99 22.970849640585485 28.020263302233843 27.060983416516056 21.94790364066462 100-101 27.283455849653183 34.95603255075721 27.654778637563403 10.105732962026206 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3112.0 1 2754.0 2 3675.5 3 5249.0 4 6841.0 5 10711.5 6 14182.5 7 16643.5 8 18461.0 9 18278.0 10 16321.5 11 14260.5 12 14830.0 13 18928.0 14 28751.0 15 42002.5 16 52513.5 17 58550.0 18 60115.5 19 57661.0 20 53538.5 21 50051.5 22 49206.0 23 53378.0 24 64006.5 25 81227.0 26 103713.5 27 127622.0 28 153783.0 29 183976.0 30 211836.0 31 238033.5 32 265437.5 33 290458.0 34 311897.0 35 333300.5 36 357857.0 37 382551.0 38 403718.5 39 417990.0 40 431670.0 41 448729.5 42 462454.5 43 476708.0 44 494441.5 45 512552.5 46 526706.0 47 535926.0 48 541470.0 49 540146.5 50 536566.0 51 532290.0 52 520922.5 53 507916.0 54 495283.0 55 471541.0 56 441339.5 57 404949.0 58 363439.0 59 322048.0 60 275303.0 61 227627.5 62 183799.5 63 145362.0 64 111260.0 65 84035.0 66 64514.5 67 49978.5 68 38634.5 69 28236.5 70 19751.0 71 14018.5 72 9991.0 73 6975.5 74 4854.0 75 3353.5 76 2290.0 77 1527.0 78 1040.0 79 712.5 80 479.5 81 322.5 82 224.5 83 157.5 84 108.5 85 82.5 86 67.5 87 50.0 88 35.5 89 24.5 90 17.0 91 13.0 92 9.5 93 6.5 94 3.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0046747600716838585 3 2.3649713684741276E-5 4 3.547457052711191E-4 5 0.0 6 0.0 7 0.0019786927116233533 8 9.932879747591335E-4 9 1.5766475789827517E-5 10-11 1.4189828210844766E-4 12-13 1.497815200033614E-4 14-15 1.5766475789827517E-5 16-17 3.626289431660329E-4 18-19 0.0 20-21 9.066150258747929E-5 22-23 0.0 24-25 0.0 26-27 6.43106810335413E-4 28-29 1.5794595705338865E-4 30-31 3.9554471095016486E-5 32-33 0.0018763973060647184 34-35 5.533840209209417E-4 36-37 0.001500665034716785 38-39 0.003944126646955174 40-41 1.4239349800368383E-4 42-43 9.236121065597149E-4 44-45 0.0019284772975505268 46-47 7.973317084552412E-5 48-49 2.2074729070906916E-4 50-51 2.1892567846677503E-4 52-53 0.0 54-55 2.4099369323886497E-4 56-57 0.0017763400891253169 58-59 0.003338200384686147 60-61 0.001110713772778246 62-63 0.0011325148262009276 64-65 9.270546149195905E-6 66-67 1.2191009486856028E-4 68-69 4.746683504102393E-6 70-71 7.691313368190046E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 2.074696436900779E-5 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 413.0 20-21 1132.0 22-23 2340.0 24-25 6560.0 26-27 8606.0 28-29 17124.0 30-31 35234.0 32-33 41984.0 34-35 56831.0 36-37 89206.0 38-39 109256.0 40-41 108128.0 42-43 118231.0 44-45 139524.0 46-47 138839.0 48-49 132975.0 50-51 122420.0 52-53 114827.0 54-55 122603.0 56-57 127991.0 58-59 129496.0 60-61 126561.0 62-63 118379.0 64-65 120883.0 66-67 129235.0 68-69 131849.0 70-71 130881.0 72-73 122956.0 74-75 124179.0 76-77 122060.0 78-79 130800.0 80-81 131912.0 82-83 125145.0 84-85 122890.0 86-87 128173.0 88-89 135962.0 90-91 145905.0 92-93 151739.0 94-95 163571.0 96-97 243525.0 98-99 1029425.0 100-101 7425393.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.70188001000376 #Duplication Level Percentage of deduplicated Percentage of total 1 88.14333577510962 72.0147624317948 2 7.752510308477986 12.667893339991714 3 2.134499930868316 5.231779716994935 4 0.85412327429377 2.791339090804045 5 0.42446084032443565 1.7339624322566205 6 0.23147216158576084 1.134702646292162 7 0.13988094906819004 0.7999975561518297 8 0.08094457552996068 0.5290659197927627 9 0.05215575813937771 0.3835101144000793 >10 0.1807194185321134 2.260786759408039 >50 0.004421895508249427 0.23907326482000077 >100 0.00141874844365097 0.17470526612393442 >500 3.757623439292445E-5 0.022257853703354813 >1k 1.878788416059729E-5 0.016163607465695114 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.1532951579655034E-5 0.0 0.0 0.0 3 0.0 3.1532951579655034E-5 0.0 0.0 0.0 4 0.0 1.0248209263387887E-4 0.0 0.0 0.0 5 0.0 1.0248209263387887E-4 0.0 0.0 0.0 6 0.0 1.0248209263387887E-4 0.0 0.0 0.0 7 0.0 1.1036533052879261E-4 0.0 0.0 0.0 8 0.0 1.2613180631862014E-4 0.0 0.0 0.0 9 0.0 2.680300884270678E-4 0.0 0.0 7.883237894913759E-6 10-11 0.0 2.680300884270678E-4 0.0 3.941618947456879E-6 7.883237894913759E-6 12-13 0.0 2.680300884270678E-4 0.0 7.883237894913759E-6 7.883237894913759E-6 14-15 0.0 4.3357808422025675E-4 0.0 7.883237894913759E-6 1.1824856842370638E-5 16-17 0.0 4.57227797904998E-4 0.0 7.883237894913759E-6 1.5766475789827517E-5 18-19 0.0 4.848191305371961E-4 0.0 7.883237894913759E-6 1.5766475789827517E-5 20-21 0.0 5.124104631693943E-4 0.0 1.5766475789827517E-5 1.5766475789827517E-5 22-23 0.0 5.873012231710751E-4 0.0 3.1532951579655034E-5 2.3649713684741276E-5 24-25 0.0 6.661336021202126E-4 0.0 7.094914105422383E-5 3.5474570527111915E-5 26-27 0.0 7.134330294896952E-4 0.0 1.340150442135339E-4 4.729942736948255E-5 28-29 0.0 7.173746484371521E-4 0.0 5.439434147490493E-4 5.1241046316939426E-5 30-31 0.0 8.198567410710309E-4 0.0 0.0019313932842538709 5.518266526439631E-5 32-33 0.0 8.277399789659446E-4 0.0 0.004584102835892351 7.094914105422383E-5 34-35 0.0 9.972295937065905E-4 0.0 0.007954187035967984 7.094914105422383E-5 36-37 0.0 0.0011588359705523225 0.0 0.012640771964494212 7.094914105422383E-5 38-39 0.0 0.0011627775894997795 0.0 0.020228388438348704 8.277399789659446E-5 40-41 0.0 0.0013165007284505978 0.0 0.029104914308021597 8.671561684405134E-5 42-43 0.0 0.0013440920610827958 0.0 0.037098517533464145 9.065723579150822E-5 44-45 0.0 0.0014859903431912434 0.0 0.045553290175759154 9.45988547389651E-5 46-47 0.0 0.0015924140547725792 0.0 0.05501711726860312 1.0248209263387887E-4 48-49 0.0 0.0016042389116149498 0.0 0.06449671083723692 1.0248209263387887E-4 50-51 0.0 0.00179343662109288 0.0 0.07366885812796908 1.0248209263387887E-4 52-53 0.0 0.0017973782400403369 0.0 0.08261633313869618 1.1824856842370638E-4 54-55 3.941618947456879E-6 0.0018052614779352507 0.0 0.09140614339152503 1.4583990105590454E-4 56-57 7.883237894913759E-6 0.0018367944295149057 0.0 0.0992144905264371 1.5372313895081828E-4 58-59 7.883237894913759E-6 0.0018407360484623625 0.0 0.1071489694676678 1.6160637684573204E-4 60-61 7.883237894913759E-6 0.0018801522379369314 0.0 0.11470111137099519 1.6554799579318892E-4 62-63 7.883237894913759E-6 0.0019038019516216726 0.0 0.1217290179543108 1.6554799579318892E-4 64-65 7.883237894913759E-6 0.0020811748042572323 0.0 0.1288672898681552 1.6554799579318892E-4 66-67 7.883237894913759E-6 0.0021402990884690854 0.0 0.13547344322409294 1.694896147406458E-4 68-69 7.883237894913759E-6 0.0022073066105758525 0.0 0.14198499772529172 1.7343123368810268E-4 70-71 7.883237894913759E-6 0.0022427811811029643 0.0 0.14832312099280237 1.891977094779302E-4 72-73 7.883237894913759E-6 0.0022467228000504214 0.0 0.15343540076765394 2.0496418526775773E-4 74-75 7.883237894913759E-6 0.002290080608472447 0.0 0.15772782380143446 2.0496418526775773E-4 76-77 7.883237894913759E-6 0.0023728546063690415 0.0 0.16145265370678125 2.0496418526775773E-4 78-79 7.883237894913759E-6 0.00241227079584361 0.0 0.16478726333632976 2.0496418526775773E-4 80-81 7.883237894913759E-6 0.002416212414791067 0.0 0.16636785253425995 2.1284742316267147E-4 82-83 7.883237894913759E-6 0.002420154033738524 0.0 0.16687237975953445 2.4832199368978337E-4 84-85 7.883237894913759E-6 0.0024595702232130924 0.0 0.16732566593849196 2.522636126372403E-4 86-87 7.883237894913759E-6 0.0024911031747927477 0.0 0.1675976376458665 2.562052315846972E-4 88-89 7.883237894913759E-6 0.0026054101242689973 0.0 0.16769223650060547 2.6014685053215404E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14685 0.0 46.794857 1 GTATCAA 25075 0.0 33.982304 1 TCAACGC 30125 0.0 27.524017 4 ATCAACG 30515 0.0 27.213186 3 CAACGCA 30690 0.0 26.990162 5 TATCAAC 31665 0.0 26.449802 2 AACGCAG 31530 0.0 26.311045 6 GTACATG 39705 0.0 23.328012 1 TACATGG 40130 0.0 22.645163 2 ACGCAGA 37100 0.0 22.327166 7 ACATGGG 40285 0.0 22.071005 3 CGCAGAG 37910 0.0 21.816988 8 CATGGGG 31525 0.0 19.73618 4 GAGTACT 23665 0.0 18.231398 12-13 GCAGAGT 45280 0.0 18.229084 9 AGAGTAC 40120 0.0 17.101452 10-11 CAGAGTA 44245 0.0 16.93306 10-11 GTGGTAT 7690 0.0 16.139053 1 GTACTAG 3025 0.0 15.970582 1 GTACTTT 27345 0.0 15.740671 14-15 >>END_MODULE