##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140019_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 16177360 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.42309041771958 33.0 31.0 34.0 31.0 34.0 2 32.6085967673341 34.0 31.0 34.0 31.0 34.0 3 32.704800597872584 34.0 31.0 34.0 31.0 34.0 4 36.19107171998398 37.0 37.0 37.0 35.0 37.0 5 35.9973117368965 37.0 35.0 37.0 35.0 37.0 6 36.06256954163102 37.0 35.0 37.0 35.0 37.0 7 36.04675008777699 37.0 35.0 37.0 35.0 37.0 8 36.048201931588345 37.0 35.0 37.0 35.0 37.0 9 37.926048255092304 39.0 38.0 39.0 35.0 39.0 10-11 37.77384214729721 39.0 37.5 39.0 35.0 39.0 12-13 37.78153821142634 39.0 38.0 39.0 35.0 39.0 14-15 39.13319314770766 40.0 39.0 41.0 36.0 41.0 16-17 39.09345622524318 40.0 38.0 41.0 36.0 41.0 18-19 39.125629583566166 40.0 38.5 41.0 36.0 41.0 20-21 39.13489510325927 40.0 39.0 41.0 36.0 41.0 22-23 39.072536726719434 40.0 39.0 41.0 36.0 41.0 24-25 39.09442990006857 40.0 39.0 41.0 36.0 41.0 26-27 38.9869977960311 40.0 39.0 41.0 35.5 41.0 28-29 38.906847130991764 40.0 38.0 41.0 35.0 41.0 30-31 38.80592924747799 40.0 38.0 41.0 35.0 41.0 32-33 38.73214488229118 40.0 38.0 41.0 35.0 41.0 34-35 38.68436885334826 40.0 38.0 41.0 35.0 41.0 36-37 38.66915429015413 40.0 38.0 41.0 35.0 41.0 38-39 38.59070605432042 40.0 38.0 41.0 35.0 41.0 40-41 38.56297933476927 40.0 38.0 41.0 35.0 41.0 42-43 38.51464411187894 40.0 38.0 41.0 34.0 41.0 44-45 38.42420433934493 40.0 38.0 41.0 34.0 41.0 46-47 38.352825619224035 40.0 38.0 41.0 34.0 41.0 48-49 38.354167863337366 40.0 38.0 41.0 34.0 41.0 50-51 38.284434404914506 40.0 38.0 41.0 34.0 41.0 52-53 38.10261351840155 40.0 37.0 41.0 33.5 41.0 54-55 37.93458004434717 40.0 37.0 41.0 33.0 41.0 56-57 37.80972695238893 39.5 37.0 41.0 33.0 41.0 58-59 37.64555533062355 39.0 36.0 41.0 33.0 41.0 60-61 37.464219829702174 39.0 36.0 41.0 33.0 41.0 62-63 37.29914716735716 39.0 35.5 40.0 32.5 41.0 64-65 37.08515711680943 38.5 35.0 40.0 32.0 41.0 66-67 36.79655882854641 38.0 35.0 40.0 32.0 41.0 68-69 36.54789199477584 37.5 35.0 40.0 32.0 41.0 70-71 36.25679486040809 37.0 35.0 39.5 31.0 41.0 72-73 35.95142637624454 36.5 35.0 39.0 31.0 41.0 74-75 35.5224723280311 36.0 34.0 39.0 31.0 40.0 76-77 33.59438402657803 34.5 32.0 36.5 28.0 39.0 78-79 34.68638223195357 35.0 34.0 37.0 30.0 39.0 80-81 34.66721603515265 35.0 34.0 37.0 31.0 39.0 82-83 34.42896694172006 35.0 34.0 36.0 30.5 38.5 84-85 34.17148351493788 35.0 34.0 36.0 30.0 37.0 86-87 33.94485461005932 35.0 34.0 36.0 30.0 37.0 88-89 33.79216893696751 35.0 34.0 35.0 30.0 36.5 90-91 33.711866936313456 35.0 34.0 35.0 30.0 36.0 92-93 33.59516370075971 35.0 34.0 35.0 30.0 36.0 94-95 33.49848962716179 35.0 33.5 35.0 30.0 36.0 96-97 33.48804118693436 35.0 33.0 35.0 30.0 35.5 98-99 33.60946131048837 35.0 34.0 35.0 30.5 35.0 100-101 32.38162002297213 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 30.0 20 73.0 21 324.0 22 1236.0 23 4124.0 24 11202.0 25 24323.0 26 44680.0 27 73953.0 28 109516.0 29 153986.0 30 206940.0 31 272648.0 32 360795.0 33 496786.0 34 731365.0 35 1138717.0 36 2058977.0 37 3820194.0 38 4605577.0 39 2026420.0 40 35491.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.25148602738642 20.124958584095303 13.294709396341553 24.32884599217672 2 14.930549481118591 21.5259363433349 40.6034386035406 22.940075572005902 3 18.398980847181598 26.301482603030728 30.200419623525672 25.099116926262 4 12.468759424869907 17.80130638780477 38.98019561880586 30.749738568519465 5 13.074191339007108 38.06672411320512 35.77309276668134 13.085991781106435 6 30.022834380887858 38.0882727466039 18.838698032311825 13.050194840196422 7 26.521994591719317 32.49416688894665 23.534489766208846 17.449348753125186 8 24.588746740241834 36.581689646234764 21.50289694809305 17.32666666543036 9 25.840438791191612 16.294161350129407 21.148367103073042 36.71703275560594 10-11 24.207709672912852 26.713044295292054 29.186983150505586 19.892262881289508 12-13 24.949453224471203 24.255646438838767 29.263190168595365 21.531710168094666 14-15 22.02382621012925 25.642897995824722 26.698701162628435 25.634574631417596 16-17 21.758557816332967 28.75937621611367 27.384146855394885 22.097919112158475 18-19 21.80949796505734 28.125318346133117 28.84995141358046 21.215232275229084 20-21 22.571042433749184 27.423868452673023 28.604990978530058 21.400098135047735 22-23 22.31086198623365 27.33679997499849 28.435330267433045 21.917007771334816 24-25 22.017108205992542 27.405616145735678 28.588634534357897 21.988641113913882 26-27 21.995914383058047 27.61749180040151 28.477211590254726 21.90938222628572 28-29 21.91569913919116 27.769874680848574 28.438246996659792 21.876179183300472 30-31 22.19879200629481 27.5680594476004 28.361874846266016 21.87127369983877 32-33 21.940455134772996 27.730661859634374 28.338470368126313 21.990412637466317 34-35 22.062642139406588 27.749245291505115 28.375978185515322 21.812134383572978 36-37 22.063390022257668 27.666328002843205 28.33666897585706 21.933612999042065 38-39 21.909058282844043 27.812173388806695 28.376872634115358 21.9018956942339 40-41 22.154874074403228 27.659795885090205 28.270944174787964 21.914385865718604 42-43 22.042368446809665 27.748978206221697 28.114885117910532 22.0937682290581 44-45 22.130240128039976 27.875333354674197 27.95593148331917 22.038495033966658 46-47 22.181396413427642 27.81103281219439 27.774647601304064 22.2329231730739 48-49 22.13607895828411 27.909870282695024 27.759397821858155 22.194652937162708 50-51 22.122405559004164 28.008183401579544 27.67967463532023 22.18973640409606 52-53 22.300998426166917 27.880223392710768 27.57871366358873 22.24006451753359 54-55 22.214187439374736 27.833595196876505 27.642737192809708 22.309480170939054 56-57 22.247971344593275 27.93306244448242 27.599257886267527 22.21970832465678 58-59 22.205939958704604 28.00802467671857 27.56509181508352 22.22094354949331 60-61 22.30409209480336 27.92939569226735 27.58718360107406 22.179328611855237 62-63 22.231678915132438 27.966623081687423 27.560793801998628 22.240904201181504 64-65 22.195850597831072 27.916310760299563 27.595648683197144 22.292189958672225 66-67 22.30040333557081 27.971131266075705 27.422046227813546 22.30641917053994 68-69 22.274041569379257 27.958346385420974 27.468961728207965 22.298650316991804 70-71 22.21787270475754 27.776384483620596 27.544518226136404 22.46122458548546 72-73 22.262251412469976 27.81878954015779 27.552166080909444 22.366792966462793 74-75 22.157815227345665 27.948824721933047 27.481253473390893 22.412106577330402 76-77 22.244967601384104 27.868218860338857 27.441682193957057 22.445131344319986 78-79 22.246394384940594 27.91449051881085 27.38774505920123 22.451370037047322 80-81 22.217452120077063 27.92442217176462 27.407424292457428 22.45070141570089 82-83 22.27548050881441 27.872967754344014 27.50407800917444 22.347473727667136 84-85 22.34731979235585 27.856708570625983 27.404393155265733 22.391578481752436 86-87 22.23777433557795 27.86452724577372 27.474505657944597 22.423192760703735 88-89 22.272531173148483 27.868337584539503 27.445737789887897 22.413393452424117 90-91 22.3129136570217 27.856635357522386 27.513350174412082 22.317100811043833 92-93 22.322695099583118 27.84575956312113 27.46280922254397 22.368736114751783 94-95 22.185996947197278 27.884627186309245 27.524742312374872 22.404633554118604 96-97 22.22375367228964 27.900862275999323 27.580459718106447 22.294924333604584 98-99 22.427567775603613 28.505989140034625 27.61935402872687 21.447089055634887 100-101 26.53575008111682 35.507609291186476 28.21606382905281 9.74057679864389 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3480.0 1 3062.0 2 3927.0 3 5592.0 4 7629.0 5 12094.5 6 15742.5 7 18233.0 8 19814.5 9 19446.0 10 17800.0 11 16085.5 12 17283.5 13 22620.0 14 34984.0 15 51496.5 16 64863.5 17 73223.5 18 76045.5 19 73871.0 20 70269.5 21 68276.5 22 70043.0 23 78401.5 24 94359.5 25 117965.0 26 148665.0 27 183492.0 28 222219.5 29 263440.0 30 302275.5 31 339926.0 32 378324.5 33 415606.5 34 451038.5 35 481907.0 36 514029.5 37 544454.0 38 567439.5 39 588260.0 40 611258.0 41 632441.0 42 646315.0 43 661906.0 44 677157.5 45 686479.5 46 690926.5 47 692649.0 48 692648.5 49 684829.0 50 671783.0 51 653894.0 52 628486.5 53 600222.5 54 566985.0 55 528933.5 56 489165.0 57 444207.5 58 395298.5 59 346372.0 60 295632.5 61 244808.5 62 198657.0 63 157646.0 64 120667.5 65 91203.0 66 69415.5 67 53306.5 68 40761.0 69 29690.0 70 21317.0 71 15447.5 72 11066.0 73 7884.5 74 5670.5 75 4018.0 76 2838.0 77 1962.5 78 1342.5 79 894.0 80 610.0 81 422.5 82 299.0 83 209.5 84 151.0 85 116.0 86 95.5 87 76.5 88 50.0 89 29.0 90 17.0 91 12.5 92 9.5 93 5.0 94 2.5 95 2.0 96 2.0 97 2.0 98 1.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004543386559982593 3 1.2362956625802973E-5 4 5.006997433450205E-4 5 0.0 6 0.0 7 0.0019471656685639683 8 0.0010075809650029425 9 4.327034819031041E-5 10-11 1.2362956625802974E-4 12-13 1.0817587047577601E-4 14-15 4.636108734676115E-5 16-17 3.61616481304737E-4 18-19 0.0 20-21 7.727163142049986E-5 22-23 0.0 24-25 0.0 26-27 6.093558894818956E-4 28-29 1.8572827989796586E-4 30-31 3.72077574825653E-5 32-33 0.0017476268812876862 34-35 5.056386354860752E-4 36-37 0.0013556829806899591 38-39 0.003853222955262563 40-41 1.2449597087943476E-4 42-43 8.634212551760976E-4 44-45 0.0017519609506791406 46-47 1.1208623572124376E-4 48-49 2.235643050690437E-4 50-51 1.8566076429717848E-4 52-53 0.0 54-55 1.9664307501747016E-4 56-57 0.0017105537149648491 58-59 0.0031561327936687907 60-61 0.0011451312918075805 62-63 0.0010467529488099054 64-65 3.6650444080603267E-6 66-67 9.277960190722204E-5 68-69 7.521010318374896E-6 70-71 3.0496169242760672E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 2.0685324664031024E-5 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 419.0 20-21 1369.0 22-23 2788.0 24-25 6215.0 26-27 9761.0 28-29 20757.0 30-31 44485.0 32-33 55377.0 34-35 75803.0 36-37 119602.0 38-39 143237.0 40-41 140573.0 42-43 158051.0 44-45 184574.0 46-47 185181.0 48-49 176033.0 50-51 162038.0 52-53 156310.0 54-55 168447.0 56-57 175565.0 58-59 174902.0 60-61 170856.0 62-63 161741.0 64-65 167061.0 66-67 175966.0 68-69 178913.0 70-71 177133.0 72-73 167275.0 74-75 167979.0 76-77 166543.0 78-79 176520.0 80-81 177291.0 82-83 168682.0 84-85 165842.0 86-87 172391.0 88-89 182208.0 90-91 192393.0 92-93 197557.0 94-95 212434.0 96-97 311626.0 98-99 1286629.0 100-101 9238833.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.40250694948604 #Duplication Level Percentage of deduplicated Percentage of total 1 89.27682430124267 75.35187783513678 2 7.342030515749036 12.393715632576933 3 1.9003647548815321 4.8118664829134055 4 0.6928544620970081 2.3391461420850055 5 0.31663054036009336 1.336220569158115 6 0.17144276063778413 0.8682119277701789 7 0.0936683019710621 0.5534087655641389 8 0.05594219349318023 0.377732910006211 9 0.03605390458624695 0.27387359391571336 >10 0.1111350397089794 1.4375305669067746 >50 0.002517890109894522 0.1437087677430808 >100 4.737900154780194E-4 0.06417930202648357 >500 4.924976883536858E-5 0.03096859242080529 >1k 1.2295378191863765E-5 0.017558911776387964 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.181478312901487E-6 2 0.0 6.181478312901487E-6 0.0 0.0 6.181478312901487E-6 3 0.0 6.181478312901487E-6 0.0 0.0 6.181478312901487E-6 4 0.0 3.708886987740892E-5 0.0 0.0 1.2362956625802974E-5 5 0.0 4.327034819031041E-5 0.0 0.0 1.2362956625802974E-5 6 0.0 4.94518265032119E-5 0.0 0.0 1.2362956625802974E-5 7 0.0 4.94518265032119E-5 0.0 0.0 1.854443493870446E-5 8 0.0 4.94518265032119E-5 0.0 0.0 1.854443493870446E-5 9 0.0 9.89036530064238E-5 0.0 6.181478312901487E-6 1.854443493870446E-5 10-11 0.0 9.89036530064238E-5 0.0 6.181478312901487E-6 1.854443493870446E-5 12-13 0.0 1.1126660963222677E-4 0.0 6.181478312901487E-6 2.1635174095155205E-5 14-15 6.181478312901487E-6 1.8235361023059387E-4 0.0 9.27221746935223E-6 4.017960903385966E-5 16-17 1.854443493870446E-5 1.8853508854349535E-4 0.0 1.854443493870446E-5 4.327034819031041E-5 18-19 2.472591325160595E-5 2.132610017951013E-4 0.0 1.854443493870446E-5 5.872404397256413E-5 20-21 2.472591325160595E-5 2.348961758902565E-4 0.0 2.472591325160595E-5 9.27221746935223E-5 22-23 3.0907391564507436E-5 2.5034987167251024E-4 0.0 5.254256565966264E-5 9.89036530064238E-5 24-25 4.636108734676116E-5 2.9980169817572214E-4 0.0 6.799626144191637E-5 1.1126660963222677E-4 26-27 4.94518265032119E-5 3.3070908974022956E-4 0.0 1.5453695782253717E-4 1.1744808794512825E-4 28-29 6.181478312901487E-5 3.3689056805313107E-4 0.0 4.914275258756682E-4 1.2053882710157899E-4 30-31 7.108700059836709E-5 4.2343126443375185E-4 0.0 0.0016782713619527539 1.2672030541448047E-4 32-33 8.035921806771933E-5 4.4815717768535777E-4 0.0 0.00403341459916822 1.359925228838327E-4 34-35 9.27221746935223E-5 5.192441782837249E-4 0.0 0.007022159363456089 1.421740011967342E-4 36-37 1.0508513131932527E-4 5.996033963514443E-4 0.0 0.011389373791520989 1.483554795096357E-4 38-39 1.1126660963222677E-4 6.428737445417546E-4 0.0 0.018553707156173813 1.5144621866608644E-4 40-41 1.483554795096357E-4 6.954163102014173E-4 0.0 0.026048749610566864 1.5453695782253717E-4 42-43 1.483554795096357E-4 7.263237017659247E-4 0.0 0.033086362669805205 1.5453695782253717E-4 44-45 1.6689991444834016E-4 8.159551373029963E-4 0.0 0.04085029943080948 1.6071843613543865E-4 46-47 1.9162582769994608E-4 8.839513987449126E-4 0.0 0.049223111805634545 1.6071843613543865E-4 48-49 2.0398878432574907E-4 8.839513987449126E-4 0.0 0.057963722140077244 1.6689991444834016E-4 50-51 2.2253321926445354E-4 9.76673573438435E-4 0.0 0.06620054199201847 1.6689991444834016E-4 52-53 2.348961758902565E-4 0.0010106717041593932 0.0 0.07416537679819205 1.7926287107414312E-4 54-55 2.4107765420315798E-4 0.001023034660785196 0.0 0.08221366156158977 1.916258276999461E-4 56-57 2.472591325160595E-4 0.0010323068782545483 0.0 0.09045975363100037 1.9471656685639683E-4 58-59 2.5034987167251024E-4 0.0010415790957239005 0.0 0.09850185691608519 2.1017026263865055E-4 60-61 2.565313499854117E-4 0.0010539420523497036 0.0 0.10657177685357809 2.2253321926445354E-4 62-63 2.5962208914186245E-4 0.0010755772264448588 0.0 0.11442534505011942 2.2871469757735502E-4 64-65 2.627128282983132E-4 0.0011899345752335363 0.0 0.12203165411414471 2.2871469757735502E-4 66-67 2.781665240805669E-4 0.0012022975318593393 0.0 0.12894254686796858 2.2871469757735502E-4 68-69 2.843480023934684E-4 0.0012579308366754524 0.0 0.1363077782777907 2.4416839335960873E-4 70-71 2.905294807063699E-4 0.001301201184865763 0.0 0.14300850076897592 2.5962208914186245E-4 72-73 2.905294807063699E-4 0.001313564141491566 0.0 0.14871709599094043 2.781665240805669E-4 74-75 2.905294807063699E-4 0.0013228363589609183 6.181478312901487E-6 0.15370863972860838 2.781665240805669E-4 76-77 2.967109590192714E-4 0.0013413807938996228 6.181478312901487E-6 0.158094398591612 2.781665240805669E-4 78-79 3.028924373321729E-4 0.0013661067071512286 6.181478312901487E-6 0.16183110223176095 2.8125726323701767E-4 80-81 3.0907391564507434E-4 0.0013661067071512286 6.181478312901487E-6 0.1635340995069653 2.874387415499191E-4 82-83 3.1525539395797585E-4 0.00137228818546413 6.181478312901487E-6 0.16410897699006513 3.028924373321729E-4 84-85 3.1525539395797585E-4 0.0013908326204028346 6.181478312901487E-6 0.16464058412497468 3.0598317648862364E-4 86-87 3.1525539395797585E-4 0.001421740011967342 6.181478312901487E-6 0.16489711547496005 3.152553939579758E-4 88-89 3.3070908974022956E-4 0.0014681010993141033 6.181478312901487E-6 0.164965111736402 3.3070908974022956E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16175 0.0 44.21954 1 GTATCAA 28665 0.0 35.103287 1 TCAACGC 33545 0.0 29.058096 4 ATCAACG 33710 0.0 28.964891 3 CAACGCA 34100 0.0 28.560793 5 AACGCAG 35405 0.0 27.613535 6 TATCAAC 36290 0.0 27.214703 2 ACGCAGA 42115 0.0 23.174679 7 GTACATG 48340 0.0 22.92221 1 CGCAGAG 42665 0.0 22.884853 8 TACATGG 47590 0.0 22.666206 2 ACATGGG 48270 0.0 21.84866 3 CATGGGG 34015 0.0 19.822327 4 GCAGAGT 52235 0.0 18.652317 9 GAGTACT 27450 0.0 17.513144 12-13 AGAGTAC 46170 0.0 17.256767 10-11 CAGAGTA 50425 0.0 16.604988 10-11 GAGTACA 33990 0.0 15.806594 1 GTGGTAT 9560 0.0 15.673482 1 ATGGGGG 22280 0.0 15.512221 5 >>END_MODULE