##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140018_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 18611933 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.416291311601 33.0 31.0 34.0 31.0 34.0 2 32.59310760467491 34.0 31.0 34.0 31.0 34.0 3 32.68888051552732 34.0 31.0 34.0 31.0 34.0 4 36.180359235120825 37.0 35.0 37.0 35.0 37.0 5 35.98753987562711 37.0 35.0 37.0 35.0 37.0 6 36.054444425519904 37.0 35.0 37.0 35.0 37.0 7 36.03905424546714 37.0 35.0 37.0 35.0 37.0 8 36.040391559544084 37.0 35.0 37.0 35.0 37.0 9 37.9165042126468 39.0 38.0 39.0 35.0 39.0 10-11 37.763854377726375 39.0 37.5 39.0 35.0 39.0 12-13 37.77055274162012 39.0 38.0 39.0 35.0 39.0 14-15 39.11498706233253 40.0 38.5 41.0 36.0 41.0 16-17 39.078556644277626 40.0 38.0 41.0 36.0 41.0 18-19 39.11800687225771 40.0 38.5 41.0 36.0 41.0 20-21 39.12721043894841 40.0 39.0 41.0 36.0 41.0 22-23 39.06518105219175 40.0 39.0 41.0 36.0 41.0 24-25 39.08866566997936 40.0 39.0 41.0 36.0 41.0 26-27 38.97999453528604 40.0 39.0 41.0 35.5 41.0 28-29 38.90058058821439 40.0 38.0 41.0 35.0 41.0 30-31 38.8006461486817 40.0 38.0 41.0 35.0 41.0 32-33 38.72515177628601 40.0 38.0 41.0 35.0 41.0 34-35 38.67601751700411 40.0 38.0 41.0 35.0 41.0 36-37 38.66621117716163 40.0 38.0 41.0 35.0 41.0 38-39 38.58816746084237 40.0 38.0 41.0 35.0 41.0 40-41 38.56240710575319 40.0 38.0 41.0 35.0 41.0 42-43 38.518257425961586 40.0 38.0 41.0 34.0 41.0 44-45 38.42726716432237 40.0 38.0 41.0 34.0 41.0 46-47 38.36378724002132 40.0 38.0 41.0 34.0 41.0 48-49 38.37145506122718 40.0 38.0 41.0 34.0 41.0 50-51 38.31025149544416 40.0 38.0 41.0 34.0 41.0 52-53 38.13720159046434 40.0 37.5 41.0 33.5 41.0 54-55 37.98018048879453 40.0 37.0 41.0 33.0 41.0 56-57 37.86337496153743 40.0 37.0 41.0 33.0 41.0 58-59 37.70891432691805 39.0 36.5 41.0 33.0 41.0 60-61 37.53976697499478 39.0 36.0 41.0 33.0 41.0 62-63 37.38696189713892 39.0 35.5 40.5 32.5 41.0 64-65 37.18461193838631 39.0 35.0 40.0 32.0 41.0 66-67 36.90345791420994 38.0 35.0 40.0 32.0 41.0 68-69 36.66041293016424 37.5 35.0 40.0 32.0 41.0 70-71 36.37319809041683 37.0 35.0 39.5 31.5 41.0 72-73 36.068946424200334 36.5 35.0 39.0 31.0 41.0 74-75 35.63585571871498 36.0 34.5 39.0 31.0 40.5 76-77 33.699058972264105 34.5 32.0 36.5 28.0 39.0 78-79 34.78434715946973 35.0 34.0 37.0 30.0 39.0 80-81 34.755957727523224 35.0 34.0 37.0 31.0 39.0 82-83 34.508839120968986 35.0 34.0 36.5 31.0 39.0 84-85 34.24352876943703 35.0 34.0 36.0 30.0 37.0 86-87 34.00528807850038 35.0 34.0 36.0 30.0 37.0 88-89 33.845133540488504 35.0 34.0 35.0 30.0 37.0 90-91 33.76039520531411 35.0 34.0 35.0 30.0 36.0 92-93 33.64043972071061 35.0 34.0 35.0 30.0 36.0 94-95 33.53786268370716 35.0 34.0 35.0 30.0 36.0 96-97 33.52272130377285 35.0 34.0 35.0 30.0 36.0 98-99 33.640454847422134 35.0 34.0 35.0 30.5 35.0 100-101 32.432046467643275 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 8.0 19 24.0 20 73.0 21 366.0 22 1458.0 23 4963.0 24 12608.0 25 27349.0 26 50946.0 27 83349.0 28 125268.0 29 175341.0 30 235390.0 31 312527.0 32 414248.0 33 565901.0 34 833716.0 35 1287423.0 36 2307440.0 37 4345577.0 38 5402216.0 39 2383751.0 40 41991.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.11120360254897 20.28115510624286 13.48669694867266 24.12094434253551 2 14.715029358918146 21.64338478666426 41.08832714345893 22.55325871095866 3 18.346022237026347 26.58884776652138 30.337196070628032 24.727933925824246 4 12.258989039301337 18.020852401594876 39.409175686407714 30.310982872696073 5 12.819039269053892 38.31764277251589 35.923931168245666 12.939386790184557 6 29.515732165795576 38.40743131879055 19.11795615844717 12.958880356966704 7 26.251007641120665 32.77282795074905 23.689768341002683 17.286396067127612 8 24.344900076451584 36.80083456825917 21.633606330700577 17.220659024588674 9 25.752952784462263 16.528463150827395 21.360832979975633 36.357751084734716 10-11 23.989247959465093 26.94985237677661 29.35137121076618 19.709528452992114 12-13 24.83637424052317 24.51913378572293 29.401279798967405 21.243212174786493 14-15 21.860903107526408 25.878461634719095 27.03275112507838 25.227884132676117 16-17 21.4615432868303 29.004674033919486 27.658890221521293 21.87489245772892 18-19 21.46027766164858 28.36338654346112 29.216959893418913 20.959375901471383 20-21 22.373990025095768 27.550219207821396 28.97659064431743 21.099200122765406 22-23 21.992275517470095 27.50480234366515 28.842053607734652 21.660868531130102 24-25 21.71522362481017 27.606335795756067 29.010275267209785 21.668165312223977 26-27 21.70239818888947 27.78356476346805 28.87020688227378 21.643830165368698 28-29 21.607515404833055 27.98327122392092 28.838470125352 21.570743245894022 30-31 21.9318352268891 27.788043045392374 28.748126558337567 21.531995169380956 32-33 21.687757069445226 27.900485734151324 28.73980231610077 21.671954880302675 34-35 21.76282974625877 27.982671367757295 28.73879769628902 21.515701189694912 36-37 21.75297120353067 27.884772214595767 28.747595674147895 21.61466090772567 38-39 21.603265492394915 28.034697685796832 28.782981473463693 21.579055348344557 40-41 21.84027795220208 27.91242686101954 28.668831769860986 21.578463416917394 42-43 21.773622802717277 27.957708523005813 28.496443728552418 21.772224945724492 44-45 21.856017637490677 28.110824000101715 28.297552346787736 21.735606015619872 46-47 21.883246405222067 28.066141454074028 28.097976342927577 21.952635797776324 48-49 21.855203723649062 28.152346041170613 28.11194616569312 21.880504069487205 50-51 21.81354285463972 28.250030035129654 28.022682013179285 21.913745097051343 52-53 21.973732428157046 28.15761611571292 27.910352418808564 21.95829903732147 54-55 21.955353153300898 28.096574030011766 27.956515398123756 21.99155741856358 56-57 21.964984027933223 28.20518191072144 27.883819082444422 21.94601497890092 58-59 21.933475127626235 28.247062779096442 27.913906212348888 21.905555880928436 60-61 21.976362236074504 28.237514666566803 27.90265831921821 21.883464778140485 62-63 21.955221221556464 28.209730197960592 27.87372725681745 21.9613213236655 64-65 21.895827424124324 28.21622980794024 27.884470214991236 22.003472552944203 66-67 22.00282915928422 28.228536724748103 27.70070811513759 22.067926000830088 68-69 21.983182758927924 28.239772049415336 27.786699947455514 21.99034524420123 70-71 21.922066224120364 28.021526466980625 27.873346806739246 22.183060502159773 72-73 21.98129954429445 28.065702469138454 27.8754271568739 22.0775708296932 74-75 21.885697476349772 28.19610209589471 27.78059689074997 22.137603537005553 76-77 21.93545731272146 28.174210646257407 27.735394249988016 22.15493779103312 78-79 21.987473232224502 28.162985840270593 27.70223196538786 22.147308962117048 80-81 21.931770053254557 28.171455543183395 27.740642416046494 22.156131987515554 82-83 21.985100240952146 28.129327889922727 27.823004137115053 22.062567732010073 84-85 22.145364031334765 28.11714865356045 27.68198163839695 22.05550567670784 86-87 21.9117249564797 28.159650814410924 27.79996122177898 22.1286630073304 88-89 22.006371973953915 28.13003786883339 27.77296906676187 22.090621090450824 90-91 22.056729296282324 28.14418924502524 27.78843984387203 22.010641614820404 92-93 22.060103464080218 28.10060883083422 27.767482208885337 22.071805496200227 94-95 21.90498589677878 28.193551824559666 27.80924525323178 22.09221702542978 96-97 21.916702970921417 28.216831800081856 27.874034103047883 21.992431125948844 98-99 22.13654120082387 28.778596115977784 27.921277877699314 21.163584805499035 100-101 26.08873203552646 35.870361017515826 28.538431618004555 9.502475328953162 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4858.0 1 4217.0 2 5271.5 3 7468.0 4 10016.5 5 15633.0 6 20219.0 7 23282.5 8 25452.5 9 25050.0 10 22851.5 11 20729.0 12 22339.0 13 29187.0 14 44685.0 15 65437.5 16 82602.5 17 93190.0 18 96250.5 19 93063.5 20 87589.5 21 83334.5 22 84365.0 23 94951.0 24 115125.5 25 143761.0 26 180301.5 27 221191.0 28 266686.5 29 315504.5 30 359293.5 31 402035.0 32 447937.0 33 492161.5 34 534820.0 35 574423.0 36 615236.0 37 652873.5 38 680578.5 39 702736.5 40 725709.5 41 747561.0 42 761837.5 43 776570.0 44 793065.5 45 804355.0 46 809847.0 47 813634.5 48 810314.0 49 795184.0 50 775161.0 51 744394.0 52 705351.0 53 666349.5 54 623139.5 55 572575.0 56 520168.0 57 468209.5 58 412705.0 59 357603.0 60 303146.5 61 248900.0 62 198755.0 63 155579.0 64 118664.5 65 89318.5 66 67044.0 67 50961.0 68 38869.5 69 28219.0 70 20333.0 71 14809.5 72 10777.0 73 7704.0 74 5420.5 75 3779.0 76 2621.5 77 1736.5 78 1139.5 79 779.5 80 569.0 81 401.0 82 276.0 83 201.0 84 148.5 85 103.0 86 76.5 87 58.5 88 42.0 89 31.5 90 24.5 91 19.0 92 16.0 93 9.5 94 3.5 95 1.5 96 1.0 97 0.5 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0047979970699443195 3 1.0745794109617739E-5 4 3.8684858794623854E-4 5 0.0 6 5.372897054808869E-6 7 0.002127667233704312 8 8.274261464405659E-4 9 4.835607349327982E-5 10-11 1.2894952931541285E-4 12-13 1.3700887489762618E-4 14-15 4.0296727911066514E-5 16-17 3.519247570899809E-4 18-19 0.0 20-21 1.074626005970837E-4 22-23 0.0 24-25 0.0 26-27 6.748599685730349E-4 28-29 1.560648243770242E-4 30-31 2.9648919596065276E-5 32-33 0.0019167728574149437 34-35 4.7217645939838743E-4 36-37 0.0013368934350783813 38-39 0.003919348229717043 40-41 1.5819584356795683E-4 42-43 9.244259384954211E-4 44-45 0.00196236339911923 46-47 6.594037831543205E-5 48-49 2.3506804262149277E-4 50-51 2.1432646777150885E-4 52-53 0.0 54-55 2.0101772574305601E-4 56-57 0.0016118423239378712 58-59 0.0032078756912526573 60-61 0.0012099197745431137 62-63 0.0010922148155508853 64-65 0.0 66-67 1.2895554199659673E-4 68-69 1.3064266917605107E-5 70-71 4.634129209717451E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 3.9482095408124624E-5 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 525.0 20-21 1646.0 22-23 3181.0 24-25 7783.0 26-27 11871.0 28-29 24093.0 30-31 53469.0 32-33 64652.0 34-35 87386.0 36-37 136999.0 38-39 164234.0 40-41 164116.0 42-43 182567.0 44-45 214442.0 46-47 214464.0 48-49 203042.0 50-51 186747.0 52-53 178411.0 54-55 191020.0 56-57 199540.0 58-59 197192.0 60-61 193134.0 62-63 184286.0 64-65 188470.0 66-67 199264.0 68-69 203508.0 70-71 200183.0 72-73 190838.0 74-75 191935.0 76-77 189600.0 78-79 201136.0 80-81 203086.0 82-83 193379.0 84-85 190741.0 86-87 197372.0 88-89 206929.0 90-91 219036.0 92-93 226248.0 94-95 242143.0 96-97 355288.0 98-99 1476797.0 100-101 1.067118E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.60921765868363 #Duplication Level Percentage of deduplicated Percentage of total 1 89.1265300901412 74.5179945346983 2 7.276051941911198 12.16690021014282 3 1.9214917800499272 4.819632734026974 4 0.7736679348374828 2.587430830374854 5 0.3557387118873385 1.4871517695904117 6 0.18908353459028138 0.9485475839539242 7 0.1118102943033623 0.6543859863023904 8 0.06434747838012457 0.4304033860537019 9 0.04196535365908426 0.31578213493854107 >10 0.13600062096303686 1.707285954330689 >50 0.0025645615807635786 0.13783397952986892 >100 6.369134359474492E-4 0.09199375022018831 >500 3.326646027348857E-5 0.021264209232787785 >1k 7.751780010543557E-5 0.11339293660449477 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 5.372897054808869E-6 1.0745794109617739E-5 2 0.0 1.611869116442661E-5 0.0 5.372897054808869E-6 1.0745794109617739E-5 3 0.0 1.611869116442661E-5 0.0 1.0745794109617739E-5 1.0745794109617739E-5 4 0.0 2.1491588219235478E-5 0.0 2.1491588219235478E-5 1.0745794109617739E-5 5 0.0 2.6864485274044346E-5 0.0 2.6864485274044346E-5 1.0745794109617739E-5 6 0.0 2.6864485274044346E-5 0.0 2.6864485274044346E-5 1.611869116442661E-5 7 0.0 2.6864485274044346E-5 0.0 4.8356073493279824E-5 1.611869116442661E-5 8 1.0745794109617739E-5 2.6864485274044346E-5 0.0 5.910186760289756E-5 1.611869116442661E-5 9 1.0745794109617739E-5 5.910186760289756E-5 0.0 9.671214698655965E-5 1.611869116442661E-5 10-11 2.6864485274044346E-5 5.910186760289756E-5 0.0 1.1014438962358182E-4 1.611869116442661E-5 12-13 2.6864485274044346E-5 5.910186760289756E-5 0.0 1.23576632260604E-4 1.611869116442661E-5 14-15 3.492383085625765E-5 1.0477149256877295E-4 0.0 1.5312756606205278E-4 2.6864485274044346E-5 16-17 4.566962496587539E-5 1.1283083815098625E-4 0.0 1.773056028086927E-4 2.6864485274044346E-5 18-19 4.8356073493279824E-5 1.23576632260604E-4 0.0 2.2566167630197248E-4 4.029672791106652E-5 20-21 4.8356073493279824E-5 1.3432242637022174E-4 0.0 3.250602718159366E-4 4.8356073493279824E-5 22-23 4.8356073493279824E-5 1.5044111753464835E-4 0.0 3.9759438205585633E-4 7.522055876732417E-5 24-25 8.327990434953748E-5 1.6118691164426608E-4 0.0 4.889336319876071E-4 1.0745794109617738E-4 26-27 9.402569845915521E-5 1.6118691164426608E-4 0.0 6.044509186659977E-4 1.1283083815098625E-4 28-29 9.671214698655965E-5 1.6387336017167052E-4 0.0 0.001364715851921453 1.1283083815098625E-4 30-31 1.1820373520579512E-4 2.0685653661014147E-4 0.0 0.0037072989678181194 1.23576632260604E-4 32-33 1.2357663226060398E-4 2.095429851375459E-4 0.0 0.007771895589781029 1.396953234250306E-4 34-35 1.3700887489762618E-4 2.552126101034213E-4 0.0 0.013252250585686076 1.396953234250306E-4 36-37 1.5044111753464835E-4 2.9013644095967896E-4 0.0 0.020986535896083444 1.477546690072439E-4 38-39 1.5044111753464835E-4 2.955093380144878E-4 0.0 0.03288212997543028 1.5044111753464835E-4 40-41 1.5581401458945722E-4 3.1162802917891443E-4 0.0 0.044288790422789506 1.5581401458945722E-4 42-43 1.5581401458945722E-4 3.1968737476112776E-4 0.0 0.05400298829788394 1.5581401458945722E-4 44-45 1.5850046311686165E-4 3.492383085625765E-4 0.0 0.0647622146501387 1.5850046311686165E-4 46-47 1.6387336017167052E-4 3.7610279383662085E-4 0.0 0.07644020639876578 1.7999205133609712E-4 48-49 1.6655980869907495E-4 3.814756908914297E-4 0.0 0.08751106078019946 1.8805139691831043E-4 50-51 1.6655980869907495E-4 4.2714531585730513E-4 0.0 0.0978941843386176 1.9073784544571486E-4 52-53 1.692462572264794E-4 4.2983176438470954E-4 0.0 0.10747405978734181 2.0417008808273703E-4 54-55 1.7193270575388382E-4 4.352046614395184E-4 0.0 0.11739511419904639 2.2028877924716364E-4 56-57 1.773056028086927E-4 4.51323352603945E-4 0.0 0.1269105148831129 2.256616763019725E-4 58-59 1.773056028086927E-4 4.566962496587539E-4 0.0 0.13632651697166542 2.2834812482937694E-4 60-61 1.8805139691831043E-4 4.755013893505849E-4 0.0 0.14517030552388083 2.3103457335678138E-4 62-63 1.8805139691831043E-4 4.916200805150114E-4 0.0 0.15395230575996594 2.3640747041159024E-4 64-65 1.8805139691831043E-4 5.104252202068426E-4 0.0 0.16180210835704167 2.3909391893899468E-4 66-67 1.934242939731193E-4 5.157981172616515E-4 0.0 0.16975936889521365 2.498397130486124E-4 68-69 2.0417008808273703E-4 5.211710143164603E-4 0.0 0.17815989344040728 2.525261615760168E-4 70-71 2.0685653661014147E-4 5.319168084260781E-4 0.0 0.18589417875080466 2.5789905863082574E-4 72-73 2.1222943366495034E-4 5.37289705480887E-4 0.0 0.1915330342098266 2.9013644095967896E-4 74-75 2.1491588219235477E-4 5.480354995905047E-4 0.0 0.19649759108846998 2.9282288948708336E-4 76-77 2.1491588219235477E-4 5.990780216111889E-4 0.0 0.20116395218057148 2.955093380144878E-4 78-79 2.2028877924716364E-4 6.178831613030199E-4 0.0 0.20498408198654058 2.955093380144878E-4 80-81 2.2028877924716364E-4 6.178831613030199E-4 0.0 0.20684310436750444 3.0625513212410556E-4 82-83 2.2028877924716364E-4 6.286289554126377E-4 0.0 0.20747173332291707 3.170009262337233E-4 84-85 2.2028877924716364E-4 6.474340951044687E-4 0.0 0.20799290433723355 3.170009262337233E-4 86-87 2.2028877924716364E-4 6.528069921592776E-4 0.0 0.20823468470469994 3.170009262337233E-4 88-89 2.2028877924716364E-4 6.904172715429396E-4 0.0 0.2083233375061043 3.2237382328853217E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 22490 0.0 43.341545 1 GTATCAA 39395 0.0 33.211334 1 ATCAACG 45515 0.0 28.153765 3 TCAACGC 45725 0.0 28.069725 4 CAACGCA 46765 0.0 27.45441 5 AACGCAG 48295 0.0 26.670347 6 TATCAAC 48500 0.0 26.62689 2 ACGCAGA 55865 0.0 23.026743 7 CGCAGAG 56730 0.0 22.697098 8 GTACATG 60110 0.0 21.662817 1 TACATGG 58990 0.0 21.597218 2 ACATGGG 59865 0.0 20.672277 3 GCAGAGT 67850 0.0 18.848946 9 CATGGGG 40670 0.0 18.796751 4 GAGTACT 34860 0.0 18.12384 12-13 AGAGTAC 59660 0.0 17.242916 10-11 CAGAGTA 66010 0.0 16.84447 10-11 GTACTTT 40525 0.0 15.601522 14-15 ATGGGGG 25510 0.0 15.364938 5 GAGTACA 42665 0.0 15.12437 1 >>END_MODULE