##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140017_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10959669 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.71585200246467 34.0 31.0 34.0 31.0 34.0 2 32.890720878522885 34.0 31.0 34.0 31.0 34.0 3 32.98623407331006 34.0 31.0 34.0 31.0 34.0 4 36.382416385020385 37.0 37.0 37.0 35.0 37.0 5 36.230554225679626 37.0 37.0 37.0 35.0 37.0 6 36.28485732552689 37.0 37.0 37.0 35.0 37.0 7 36.281154020253716 37.0 37.0 37.0 35.0 37.0 8 36.26211047067206 37.0 37.0 37.0 35.0 37.0 9 38.144338483215144 39.0 39.0 39.0 37.0 39.0 10-11 38.03855193984417 39.0 38.0 39.0 36.0 39.0 12-13 38.07803178179925 39.0 38.0 39.0 37.0 39.0 14-15 39.50075002265123 41.0 39.0 41.0 37.0 41.0 16-17 39.48430258249588 40.5 39.0 41.0 37.0 41.0 18-19 39.52983634815978 41.0 39.0 41.0 37.0 41.0 20-21 39.54550390057966 41.0 39.0 41.0 37.0 41.0 22-23 39.48058748548507 41.0 39.0 41.0 37.0 41.0 24-25 39.43822835452333 41.0 39.0 41.0 37.0 41.0 26-27 39.40133758457996 40.5 39.0 41.0 37.0 41.0 28-29 39.3059221423585 40.0 39.0 41.0 36.0 41.0 30-31 39.21033669489604 40.0 39.0 41.0 36.0 41.0 32-33 39.10311975819674 40.0 39.0 41.0 35.5 41.0 34-35 39.02870082459475 40.0 39.0 41.0 35.0 41.0 36-37 39.033925720510055 40.0 39.0 41.0 35.0 41.0 38-39 39.0278193818737 40.0 39.0 41.0 35.0 41.0 40-41 38.97953147973073 40.0 38.5 41.0 35.0 41.0 42-43 38.9425593893643 40.0 38.0 41.0 35.0 41.0 44-45 38.907269974825894 40.0 38.0 41.0 35.0 41.0 46-47 38.8329538548778 40.0 38.0 41.0 35.0 41.0 48-49 38.8057981597791 40.0 38.0 41.0 35.0 41.0 50-51 38.71319819759087 40.0 38.0 41.0 35.0 41.0 52-53 38.5418240988692 40.0 38.0 41.0 34.5 41.0 54-55 38.40888775305173 40.0 38.0 41.0 34.0 41.0 56-57 38.24896057696074 40.0 37.0 41.0 34.0 41.0 58-59 38.063004217857085 40.0 37.0 41.0 34.0 41.0 60-61 37.940329591248585 39.5 36.5 41.0 34.0 41.0 62-63 37.77392761728622 39.0 36.0 41.0 33.5 41.0 64-65 37.52664444388644 39.0 36.0 41.0 33.0 41.0 66-67 37.2580794883898 39.0 35.0 40.0 33.0 41.0 68-69 37.008148565242024 38.0 35.0 40.0 33.0 41.0 70-71 36.7138908340906 37.0 35.0 40.0 32.5 41.0 72-73 36.36408518616711 37.0 35.0 39.0 32.0 41.0 74-75 35.9836953940101 36.0 35.0 39.0 32.0 40.5 76-77 34.05283695974935 34.5 32.5 36.5 29.0 39.0 78-79 35.126972318304645 35.0 34.0 37.0 31.0 39.0 80-81 35.05061591406083 35.0 34.0 37.0 31.0 39.0 82-83 34.76537222002998 35.0 34.0 37.0 31.0 39.0 84-85 34.5101782248879 35.0 34.0 36.0 31.0 37.5 86-87 34.298651932197316 35.0 34.0 36.0 31.0 37.0 88-89 34.14046452906898 35.0 34.0 35.5 31.0 37.0 90-91 33.9961398324594 35.0 34.0 35.0 31.0 36.0 92-93 33.911211647065535 35.0 34.0 35.0 31.0 36.0 94-95 33.82944630419749 35.0 34.0 35.0 31.0 36.0 96-97 33.79140740052552 35.0 34.0 35.0 31.0 36.0 98-99 33.824664503443046 35.0 34.0 35.0 31.0 35.0 100-101 32.55080277833936 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 8.0 20 33.0 21 119.0 22 568.0 23 1806.0 24 4993.0 25 11103.0 26 21031.0 27 35068.0 28 53444.0 29 76154.0 30 103813.0 31 137697.0 32 184022.0 33 256407.0 34 390263.0 35 631803.0 36 1233802.0 37 2627948.0 38 3588953.0 39 1568518.0 40 32114.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.10771328951632 20.171996070319274 13.461455815864513 24.258834824299893 2 14.714798752186088 21.418947161345617 41.19665533023098 22.669598756237313 3 18.29241975454864 26.23317651166052 30.3469783305413 25.127425403249536 4 12.271873688086941 17.90739368537153 39.465985404843195 30.354747221698332 5 12.9124099219812 38.10740217813207 36.09712193784008 12.883065962046652 6 29.788271890328076 38.41828617269372 19.00173262531925 12.791709311658956 7 26.365887509923887 32.5239749485135 23.680441443988865 17.42969609757375 8 24.28758153236362 36.98047511748827 21.55642470691234 17.175518643235772 9 25.59925579765653 16.56562845451638 21.333678851504896 36.50143689632219 10-11 23.983291330507193 26.85712408687194 29.454253721401734 19.705330861219135 12-13 24.75310862527034 24.37673634436937 29.45297638993661 21.417178640423682 14-15 21.812569165621888 25.851656715241955 26.88488737349224 25.45088674564392 16-17 21.59626008861162 28.92984002662163 27.567096743641205 21.906803141125547 18-19 21.597769056711474 28.31115155028861 29.023426711153412 21.067652681846504 20-21 22.345876825555568 27.600639089871787 28.82423979192168 21.229244292650968 22-23 22.046315067513113 27.563849276686952 28.65950921589011 21.730326439909827 24-25 21.831980597823073 27.59848318384448 28.778741208702318 21.790795009630127 26-27 21.81814554794505 27.811891812141788 28.627608192103576 21.74235444780959 28-29 21.74414104721486 27.930344194421597 28.633071864635333 21.69244289372821 30-31 22.023603956918755 27.75301908949895 28.582047712772184 21.641329240810116 32-33 21.778546703921972 27.916977975426565 28.506922397703967 21.797552922947496 34-35 21.93621345461966 27.90883578731016 28.553848077110455 21.601102680959723 36-37 21.924706413791252 27.83106203676573 28.532108876583795 21.71212267285922 38-39 21.746715705201357 27.978209876786853 28.59620035713216 21.678874060879632 40-41 22.013460455966204 27.8298786182274 28.48374859398321 21.672912331823188 42-43 21.88262806246566 27.905369299095145 28.35801887303241 21.853983765406785 44-45 21.96854778335787 28.005295046705502 28.218122313964844 21.808034855971787 46-47 21.984943571824633 27.99491917082716 28.00848779525957 22.011649462088638 48-49 21.931906086516946 28.05322554954886 28.080054406696636 21.93481395723756 50-51 21.92617175178083 28.143265806680855 27.97707459627229 21.95348784526602 52-53 22.08193213626463 28.044762628347552 27.843932449543367 22.029372785844448 54-55 22.015958305705823 27.9797741307643 27.940582018253856 22.06368554527602 56-57 22.052871467821543 28.080239022720765 27.871594216813094 21.995295292644602 58-59 22.004852343480856 28.128513857416067 27.888104130907195 21.978529668195883 60-61 22.060850640773246 28.070191003649487 27.91832546522588 21.950632890351386 62-63 22.017792174008736 28.125044071757934 27.84374143978483 22.013422314448505 64-65 21.966168940033747 28.119101156047442 27.865623263365276 22.049106640553536 66-67 22.065358965571562 28.15500982882016 27.70559566301245 22.07403554259583 68-69 21.986897085353412 28.174929365088076 27.76203695708282 22.07613659247569 70-71 22.012740842489322 27.9245397662266 27.83810268791344 22.224616703370632 72-73 22.00023089975961 27.987617621333925 27.81762146388715 22.194530015019314 74-75 21.903915821244883 28.076716692409743 27.779863460315475 22.239504026029902 76-77 22.03007014568677 28.010225324573835 27.701003132470397 22.258701397269 78-79 22.064008454824116 28.057910761638293 27.631671300830035 22.246409482707556 80-81 21.99426984435359 28.084884805353948 27.66024711444603 22.260598235846434 82-83 22.079701447661133 28.018611144007462 27.73352893112126 22.16815847721015 84-85 22.171111378654672 28.01441311910264 27.682506826119546 22.131968676123137 86-87 22.000914798952138 28.07064853935405 27.73064299862698 22.197793663066832 88-89 22.058788535514594 28.04609670515083 27.709036184016977 22.186078575317595 90-91 22.102666570926168 28.032026997381713 27.753599701884713 22.111706729807405 92-93 22.073794858340452 28.032028630161125 27.778256647675644 22.115919863822782 94-95 21.967727893369958 28.073108616599267 27.839131122012507 22.12003236801827 96-97 21.91851611666862 28.096195679064596 27.891329371174024 22.09395883309276 98-99 22.238950460566738 28.693390881199527 27.880864431770835 21.186794226462904 100-101 22.989454509124226 31.300276531051612 24.985043215528886 20.725225744295276 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2036.0 1 1766.5 2 2263.5 3 3245.0 4 4389.5 5 7056.5 6 9353.5 7 10990.0 8 12113.5 9 11974.5 10 10879.5 11 9663.5 12 10429.5 13 13765.0 14 21114.0 15 31006.5 16 39169.5 17 44281.0 18 46094.0 19 45013.5 20 42836.5 21 41397.5 22 42158.5 23 47700.5 24 58367.0 25 73179.5 26 92797.5 27 115944.5 28 142425.0 29 170272.5 30 196825.0 31 224128.0 32 252019.5 33 278286.0 34 303043.5 35 326098.0 36 349725.5 37 372104.0 38 389711.0 39 405384.0 40 422567.0 41 437120.0 42 446861.5 43 456176.0 44 465184.0 45 471932.5 46 474619.0 47 474956.0 48 469671.5 49 457466.5 50 444794.0 51 427475.5 52 404194.5 53 380954.5 54 355050.5 55 324946.0 56 295706.5 57 265214.5 58 232623.5 59 200791.5 60 168121.5 61 136602.0 62 107861.0 63 83239.5 64 62624.5 65 46811.0 66 35684.0 67 27792.5 68 21652.0 69 15791.5 70 11450.5 71 8452.0 72 6197.5 73 4502.0 74 3235.5 75 2353.0 76 1669.0 77 1087.5 78 691.0 79 473.0 80 341.0 81 243.5 82 179.0 83 126.5 84 86.0 85 57.5 86 42.5 87 34.5 88 26.5 89 19.0 90 14.0 91 11.5 92 9.0 93 5.0 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.007359893807012E-4 3 0.004671673934678136 4 5.474617892200941E-5 5 2.7373089461004706E-5 6 0.0 7 0.0 8 5.83959241834767E-4 9 0.002591319135641779 10-11 8.12068320676473E-4 12-13 3.786610708772318E-4 14-15 1.4142762888185765E-4 16-17 0.0014416493782795812 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 7.728297215128676E-4 32-33 7.516268367078781E-4 34-35 3.217224172549476E-5 36-37 8.630097145357695E-4 38-39 6.500868214167389E-4 40-41 2.80490366348E-5 42-43 1.6949259472729254E-4 44-45 0.0010253885249339833 46-47 0.0 48-49 4.644830158882222E-4 50-51 2.441115890707531E-5 52-53 2.4613345267195832E-5 54-55 8.18770019857406E-4 56-57 0.0010812310355955773 58-59 1.3133537873031623E-4 60-61 1.7846106497099423E-4 62-63 1.0294132179951312E-5 64-65 5.194644633061992E-6 66-67 0.0 68-69 2.120332359977094E-5 70-71 4.3936333252586927E-4 72-73 0.0 74-75 5.471041041178502E-6 76-77 0.0 78-79 3.1294196066632493E-4 80-81 0.0 82-83 1.143668232367538E-5 84-85 2.3130561960472416E-5 86-87 3.333548551906509E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 1.8515757156216703E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 212.0 20-21 698.0 22-23 1432.0 24-25 3173.0 26-27 4908.0 28-29 10140.0 30-31 22939.0 32-33 28603.0 34-35 39089.0 36-37 61803.0 38-39 73049.0 40-41 74082.0 42-43 83077.0 44-45 98762.0 46-47 99715.0 48-49 94758.0 50-51 86544.0 52-53 79460.0 54-55 86184.0 56-57 90072.0 58-59 91044.0 60-61 93803.0 62-63 88327.0 64-65 92305.0 66-67 98215.0 68-69 100354.0 70-71 99881.0 72-73 94554.0 74-75 95575.0 76-77 94577.0 78-79 100949.0 80-81 102988.0 82-83 97750.0 84-85 96519.0 86-87 100687.0 88-89 108189.0 90-91 117262.0 92-93 116017.0 94-95 129359.0 96-97 202083.0 98-99 930315.0 100-101 6870216.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.91236952216535 #Duplication Level Percentage of deduplicated Percentage of total 1 89.10144513210753 75.65814834016456 2 7.734364420285051 13.134864193486651 3 1.8034256071984884 4.593994246925205 4 0.6541567228849543 2.2218398951606386 5 0.31038312063206464 1.3177683116276346 6 0.14742814350709843 0.751108379966494 7 0.08204431297870352 0.48766039145879014 8 0.048451412474476055 0.32912993919228506 9 0.0316665739270956 0.24199954441186572 >10 0.08456910589219085 1.073426022808483 >50 0.0016657892092928053 0.09417280007778055 >100 3.3339837523322887E-4 0.05559098365806351 >500 4.969883363420972E-5 0.024490221179690963 >1k 1.656169415628568E-5 0.01580672988181457 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 3.649745261467294E-5 0.0 0.0 0.0 5 0.0 4.562181576834118E-5 0.0 0.0 0.0 6 1.9161162622703296E-4 5.474617892200942E-5 0.0 0.0 0.0 7 1.9161162622703296E-4 7.299490522934588E-5 0.0 9.124363153668235E-6 0.0 8 1.9161162622703296E-4 8.211926838301413E-5 0.0 1.824872630733647E-5 9.124363153668235E-6 9 2.0073598938070118E-4 1.5511417361236E-4 0.0 1.824872630733647E-5 9.124363153668235E-6 10-11 2.0986035253436943E-4 1.5511417361236E-4 0.0 6.387054207567765E-5 9.124363153668235E-6 12-13 2.2354689726487178E-4 1.5511417361236E-4 0.0 6.843272365251177E-5 9.124363153668235E-6 14-15 2.463578051490424E-4 2.0529817095753532E-4 0.0 8.211926838301413E-5 3.649745261467294E-5 16-17 3.1935271037838824E-4 2.1442253411120354E-4 0.0 9.124363153668236E-5 4.562181576834118E-5 18-19 3.1935271037838824E-4 2.463578051490424E-4 0.0 1.0036799469035059E-4 5.474617892200942E-5 20-21 3.1935271037838824E-4 2.646065314563788E-4 0.0 1.4598981045869176E-4 5.474617892200942E-5 22-23 3.1935271037838824E-4 2.6916871303321295E-4 0.0 1.7336289991969647E-4 5.9308360498843534E-5 24-25 3.1935271037838824E-4 3.1935271037838824E-4 0.0 2.2354689726487178E-4 6.843272365251177E-5 26-27 3.1935271037838824E-4 3.376014366857247E-4 0.0 3.376014366857247E-4 7.299490522934588E-5 28-29 3.1935271037838824E-4 3.421636182625588E-4 0.0 9.352472232509941E-4 7.299490522934588E-5 30-31 3.1935271037838824E-4 3.7409888930039765E-4 0.0 0.0025365729567197693 7.299490522934588E-5 32-33 3.1935271037838824E-4 3.7409888930039765E-4 0.0 0.0054061851685484295 7.299490522934588E-5 34-35 3.3303925510889064E-4 4.379694313760753E-4 0.0 0.009211044603628083 1.0036799469035059E-4 36-37 3.376014366857247E-4 5.018399734517529E-4 0.0 0.015146442835089272 1.0949235784401884E-4 38-39 3.376014366857247E-4 5.109643366054212E-4 0.0 0.027546452360924404 1.0949235784401884E-4 40-41 3.376014366857247E-4 5.748348786810988E-4 0.0 0.055567371605839556 1.0949235784401884E-4 42-43 3.376014366857247E-4 6.113323312957718E-4 0.0 0.06619269249828622 1.1405453942085295E-4 44-45 3.512879814162271E-4 7.208246891397907E-4 0.0 0.08013471939709128 1.1861672099768707E-4 46-47 3.6497452614672944E-4 7.938195943691365E-4 0.0 0.09606585746339602 1.323032657281894E-4 48-49 3.695367077235635E-4 8.029439575228047E-4 0.0 0.11039566979623198 1.4598981045869176E-4 50-51 4.0147197876140236E-4 8.622523180216483E-4 0.0 0.12531856573405636 1.4598981045869176E-4 52-53 4.1515852349190477E-4 8.668144995984824E-4 0.0 0.14556552757204622 1.5967635518919412E-4 54-55 4.1972070506873885E-4 8.713766811753166E-4 0.0 0.1866707835793216 1.7336289991969647E-4 56-57 4.1972070506873885E-4 8.850632259058189E-4 0.0 0.23115205395345426 1.7336289991969647E-4 58-59 4.1972070506873885E-4 9.124363153668236E-4 0.0 0.27750838095566577 1.7336289991969647E-4 60-61 4.5165597610657764E-4 9.352472232509942E-4 0.0 0.3082073007861825 1.7336289991969647E-4 62-63 5.018399734517529E-4 9.626203127119988E-4 0.0 0.32274697347155284 1.7336289991969647E-4 64-65 5.064021550285871E-4 0.00108579921528652 0.0 0.3360366084048706 1.7336289991969647E-4 66-67 5.292130629127576E-4 0.00108579921528652 0.0 0.3425605280597434 1.7336289991969647E-4 68-69 5.383374260664259E-4 0.0011086101231706906 0.0 0.34877878154896835 1.779250814965306E-4 70-71 5.565861523737625E-4 0.0011314210310548612 0.0 0.3544450110673963 1.8248726307336472E-4 72-73 5.83959241834767E-4 0.0011359832126316954 0.0 0.35911668500207444 1.9161162622703296E-4 74-75 5.83959241834767E-4 0.001167918483669534 0.0 0.3630675342476128 1.9161162622703296E-4 76-77 5.930836049884353E-4 0.001199853754707373 0.0 0.3664846082486615 1.9161162622703296E-4 78-79 6.022079681421036E-4 0.0012044159362842072 0.0 0.3696370757182539 1.9161162622703296E-4 80-81 6.022079681421036E-4 0.0012044159362842072 0.0 0.3709920436465737 1.9617380780386707E-4 82-83 6.022079681421036E-4 0.0012044159362842072 0.0 0.37161250034102306 2.0073598938070118E-4 84-85 6.067701497189377E-4 0.0012272268441683777 0.0 0.3722283948538957 2.0073598938070118E-4 86-87 6.113323312957718E-4 0.0012500377520525483 0.0 0.3725021257485057 2.0073598938070118E-4 88-89 6.2045669444944E-4 0.0012865352046672212 0.0 0.3726298668326571 2.0073598938070118E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10895 0.0 44.816814 1 GTATCAA 19010 0.0 34.636013 1 ATCAACG 21195 0.0 29.999699 3 TCAACGC 21245 0.0 29.848118 4 CAACGCA 21860 0.0 29.047401 5 AACGCAG 22925 0.0 27.75391 6 TATCAAC 23280 0.0 27.66029 2 ACGCAGA 26720 0.0 23.732374 7 CGCAGAG 27015 0.0 23.425865 8 GTACATG 28550 0.0 22.016794 1 TACATGG 27995 0.0 21.661167 2 ACATGGG 28645 0.0 20.693722 3 CATGGGG 20265 0.0 19.06533 4 GCAGAGT 33740 0.0 18.819857 9 GAGTACT 19050 0.0 18.008804 12-13 AGAGTAC 29590 0.0 17.286621 10-11 CAGAGTA 32635 0.0 17.039185 10-11 GTGGTAT 6705 0.0 16.345457 1 GTACTTT 22395 0.0 15.43351 14-15 ATGGGGG 13225 0.0 15.252049 5 >>END_MODULE